Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7FDB	31539	2024-09-27	2021-07-16	4.8	5.04	4.73	8.8	0.003	0.57	0.0	0.04	13.84	0.00	1.761	12.61	0.00	7.3	92.6	0.0	-0.78	0.66	0.32	—	4.7	0.004	0.83	0.0	0.05	13.81	0.01	2.298	20.02	0.01	5.6	94.3	0.0	-1.38	2.11	0.76	0.64	—	64497	8295	31	0	0	0	0	logfile
✔	7M6o	23702	2024-09-27	2021-03-26	2.84	3.65	2.87	3.4	0.009	1.38	0.0	0.09	12.01	0.01	2.041	5.25	0.00	2.8	97.2	0.0	-0.30	0.83	0.83	3.89	3.4	0.003	0.68	0.0	0.04	15.00	0.00	2.585	7.60	1.94	2.4	97.6	0.0	0.47	1.01	0.81	0.85	3.97	14670	1790	14	0	10	0	0	logfile
✔	8E93	27954	2024-09-27	2022-08-26	3.71	4.07	3.71	4.0	0.005	0.83	4.0	0.05	16.77	0.01	2.066	8.37	0.65	8.7	91.3	0.0	-2.88	0.64	0.81	2.05	4.0	0.004	0.73	0.0	0.05	15.63	0.00	2.243	6.53	5.10	9.3	90.7	0.0	-1.57	1.27	0.65	0.82	2.10	16664	2320	11	0	18	0	0	logfile
✔	7SoY	25363	2024-09-26	2021-11-01	3.4	4.73	—	3.7	0.003	0.63	0.0	0.04	12.63	0.00	2.231	12.96	0.37	1.7	98.3	0.0	1.32	0.90	0.83	0.53	3.7	0.003	0.64	0.0	0.04	14.38	0.00	2.562	12.09	1.04	1.9	98.1	0.0	1.49	0.66	0.91	0.85	0.52	12180	1529	4	0	0	0	0	logfile
✔	7K0C	22591	2024-09-29	2020-09-04	3.3	3.68	—	3.5	0.008	1.01	0.0	0.06	13.56	0.01	1.940	33.54	0.12	15.1	84.9	0.0	-3.35	0.69	0.74	1.17	3.5	0.007	0.90	0.0	0.05	16.18	0.01	2.376	21.58	4.60	12.2	87.8	0.0	-2.60	0.55	0.70	0.77	0.97	22540	2898	13	0	2	0	0	logfile
✔	7X5A	33013	2024-09-25	2022-03-04	3.01	3.27	3.09	3.2	0.003	0.53	0.0	0.04	20.33	0.00	2.182	3.74	0.00	1.7	98.3	0.0	0.22	0.70	0.81	3.38	3.2	0.003	0.54	0.0	0.04	21.86	0.00	2.511	6.85	1.72	0.8	99.2	0.0	0.31	0.37	0.73	0.87	3.40	10686	1083	12	104	0	0	0	logfile
✔	7FDA	31538	2024-09-27	2021-07-16	4.2	3.94	—	3.5	0.003	0.56	0.0	0.04	11.99	0.00	1.871	8.71	0.00	5.8	94.2	0.0	-0.86	0.72	0.63	—	3.1	0.005	0.79	0.0	0.05	13.25	0.00	2.255	14.33	0.00	5.5	94.5	0.0	-0.81	1.81	0.77	0.78	—	64497	8295	31	0	0	0	0	logfile
✔	7QUQ	14151	2024-09-28	2022-01-18	2.6	2.44	—	2.8	0.009	0.94	0.0	0.05	13.76	0.01	2.144	15.78	0.10	4.7	95.3	0.0	-1.38	0.64	0.65	1.63	2.8	0.004	0.79	0.0	0.05	16.90	0.00	2.344	18.22	2.88	4.6	95.4	0.0	-1.05	1.22	0.66	0.70	1.60	19095	2457	12	0	6	0	0	logfile
✔	7Q1Z	13776	2024-09-30	2021-10-22	3.4	2.41	—	4.0	0.004	0.61	0.0	0.04	12.72	0.00	2.074	6.27	0.04	2.2	97.8	0.0	0.60	0.48	0.31	-0.02	2.2	0.004	0.75	0.0	0.05	15.22	0.00	2.471	9.67	2.11	3.0	97.0	0.0	-0.15	1.60	0.74	0.75	1.39	23694	2916	21	0	63	0	0	logfile
✔	6VRK	21369	2024-09-24	2020-02-07	4.1	4.22	4.47	4.2	0.004	0.69	0.0	0.04	13.93	0.00	2.245	10.73	0.00	6.5	93.5	0.0	-3.10	0.47	0.69	—	4.2	0.003	0.71	0.0	0.04	13.82	0.00	2.452	12.95	0.00	6.1	93.9	0.0	-0.82	1.24	0.47	0.68	—	6141	764	4	0	4	0	0	logfile
✔	6VRL	21370	2024-09-24	2020-02-07	3.8	3.98	4.22	3.9	0.004	0.63	0.0	0.04	13.97	0.00	2.159	10.65	0.00	4.9	95.1	0.0	-3.12	0.49	0.69	1.43	3.9	0.003	0.70	0.0	0.04	16.05	0.00	2.520	12.54	2.31	5.1	94.9	0.0	-0.54	0.73	0.50	0.68	1.20	6141	764	4	0	4	0	0	logfile
✔	7ZF2	14696	2024-09-30	2022-03-31	3.86	3.97	3.73	3.9	0.007	0.62	0.0	0.04	13.32	0.00	2.162	10.43	5.77	5.7	94.3	0.0	0.01	0.78	0.86	1.96	3.9	0.003	0.61	0.0	0.04	15.27	0.00	2.509	7.79	4.36	3.5	96.5	0.0	0.39	0.37	0.78	0.85	1.43	23822	3068	7	0	3	0	0	logfile
✔	7VDA	31912	2024-09-29	2021-09-06	2.26	2.04	2.42	2.1	0.003	0.53	0.0	0.04	17.67	0.00	2.142	7.99	2.20	2.6	97.4	0.0	1.67	0.66	0.82	4.06	2.0	0.004	0.76	1.0	0.04	18.01	0.00	2.330	8.45	2.92	2.9	97.1	0.0	0.97	0.75	0.66	0.84	4.29	23292	2976	6	0	0	0	0	logfile
✔	8FiS	29209	2024-09-28	2022-12-16	3.18	3.36	3.47	3.5	0.006	0.83	1.0	0.05	19.55	0.00	2.110	3.15	0.25	5.5	94.5	0.0	-0.93	0.80	0.80	2.46	3.5	0.002	0.62	0.0	0.04	14.27	0.00	2.452	6.03	2.21	5.0	94.9	0.0	-0.24	0.63	0.79	0.84	2.07	20356	2357	57	0	142	0	0	logfile
✔	8H7G	34520	2024-09-24	2022-10-20	3.7	3.18	3.58	3.3	0.002	0.57	0.0	0.04	12.37	0.00	2.182	5.83	0.00	5.3	94.6	0.0	-1.27	0.60	0.60	0.67	3.3	0.003	0.63	0.0	0.04	15.25	0.00	2.454	6.43	1.50	5.9	94.1	0.0	-0.19	1.41	0.63	0.66	0.71	52609	6574	14	0	19	0	0	logfile
✔	7B6X	12057	2024-09-25	2020-12-08	3.6	2.59	—	2.5	0.008	1.06	0.0	0.06	14.17	0.01	2.035	44.45	0.09	13.3	86.7	0.0	-2.77	0.75	0.72	0.42	2.5	0.003	0.77	0.0	0.05	16.31	0.00	2.398	19.91	4.03	7.9	92.1	0.0	-1.12	1.37	0.75	0.71	-0.01	10470	1290	8	0	0	0	0	logfile
✔	8i0N	35104	2024-09-25	2023-01-11	3.26	3.46	3.26	3.5	0.006	0.71	0.0	0.04	14.61	0.00	2.273	3.54	0.62	4.6	95.4	0.0	0.08	0.76	0.83	2.70	3.4	0.005	0.62	0.0	0.04	15.31	0.00	2.537	5.04	1.75	4.8	95.2	0.0	0.39	0.42	0.76	0.84	2.60	9141	1190	8	0	0	0	0	logfile
✔	8oPF	17051	2024-09-29	2023-04-07	2.83	3.10	3.08	3.1	0.004	0.59	0.0	0.04	17.43	0.01	2.443	7.89	0.53	2.1	97.9	0.0	-1.34	0.53	0.84	3.17	3.1	0.005	0.63	0.0	0.04	18.34	0.01	2.384	8.74	2.31	4.7	95.3	0.0	0.32	0.53	0.53	0.85	3.14	22401	2793	19	0	0	0	0	logfile
✔	7SYM	25533	2024-09-30	2021-11-25	4.8	3.64	4.44	3.5	0.003	0.83	1.0	0.04	22.25	0.01	2.245	5.29	0.00	5.3	94.7	0.0	-2.78	0.63	0.68	—	3.5	0.002	0.57	0.0	0.03	22.01	0.00	2.156	8.53	0.05	4.2	95.8	0.0	-1.27	1.06	0.64	0.69	—	78761	4891	38	1859	2	0	0	logfile
✔	7SYG	25527	2024-09-30	2021-11-25	4.3	3.38	4.15	3.2	0.003	0.74	0.0	0.04	22.16	0.01	2.257	4.87	0.00	5.1	94.8	0.0	-2.54	0.65	0.65	—	3.2	0.005	0.78	0.0	0.04	22.35	0.01	2.155	13.72	0.05	8.2	91.8	0.0	-1.82	1.10	0.66	0.68	—	78773	4891	38	1859	2	0	0	logfile

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