Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8DBi	27285	2024-09-27	2022-06-14	2.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14496	1854	18	0	30	12	0	logfile
✔	8oT6	17171	2024-09-23	2023-04-20	2.0	2.14	1.94	2.0	0.007	1.17	0.0	0.07	11.96	0.01	2.631	0.51	1.52	2.7	97.3	0.0	-2.61	0.47	0.93	7.98	1.9	0.003	0.60	0.0	0.05	16.11	0.00	2.567	2.56	0.61	1.4	98.6	0.0	-1.65	2.61	0.46	0.93	7.45	2870	375	5	0	0	0	0	logfile
✔	8P70	17513	2024-09-23	2023-05-30	2.0	1.98	2.01	2.0	0.006	0.62	0.0	0.04	16.72	0.00	2.202	7.34	0.90	1.3	98.5	0.2	1.67	0.67	0.79	5.37	2.0	0.003	0.60	0.0	0.04	16.59	0.01	2.486	6.56	1.08	1.5	98.4	0.2	1.82	0.19	0.67	0.80	5.01	5282	630	7	0	2	154	0	logfile
✔	7oAE	12775	2024-09-26	2021-04-19	2.0	2.65	—	2.2	0.008	0.53	0.0	0.05	9.44	0.00	2.440	0.99	0.00	2.6	97.4	0.0	0.22	0.77	0.91	6.46	2.2	0.002	0.54	0.0	0.04	14.87	0.00	2.602	5.09	0.77	1.1	98.9	0.0	0.42	2.66	0.78	0.93	6.31	12768	1680	42	0	0	0	0	logfile
✔	6WX6	21951	2024-09-27	2020-05-09	2.0	2.11	2.08	2.1	0.006	0.69	0.0	0.04	14.94	0.00	2.277	0.00	0.00	1.2	98.8	0.0	1.60	0.77	0.88	7.70	2.1	0.003	0.50	0.0	0.03	16.37	0.00	2.359	1.96	0.69	1.2	98.8	0.0	4.93	0.59	0.79	0.90	7.23	68332	4128	56	0	8	2420	32664	logfile
✘	8FoZ	29357	2024-09-29	2023-01-03	2.0	2.03	2.09	2.0	0.009	0.92	0.0	0.06	15.79	0.01	2.238	2.94	1.31	0.5	99.5	0.0	0.22	0.80	0.91	7.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23648	3072	16	0	16	0	0	logfile
✔	8F0J	28758	2024-09-25	2022-11-03	2.0	1.77	1.94	1.9	0.005	0.61	1.0	0.05	15.42	0.00	2.246	4.03	0.40	1.1	98.9	0.0	-1.49	0.53	0.75	5.18	1.9	0.002	0.57	0.0	0.04	17.13	0.00	2.462	5.32	1.32	2.1	97.9	0.0	1.50	0.84	0.54	0.78	5.45	9678	1157	12	0	18	25	0	logfile
✘	8BQV	16188	2024-09-24	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.13	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✔	7QEY	13944	2024-09-25	2021-12-03	2.0	2.46	—	2.2	0.005	0.85	0.0	0.03	10.53	0.00	2.199	3.57	2.35	1.7	98.3	0.0	1.74	0.77	0.90	5.27	2.2	0.003	0.68	0.0	0.04	13.40	0.00	2.548	3.51	2.04	2.1	97.9	0.0	3.40	0.99	0.78	0.92	3.80	9467	1092	18	0	30	281	0	logfile
✔	8PPo	17806	2024-09-23	2023-07-07	2.0	2.30	1.95	2.2	0.008	1.20	1.0	0.07	13.41	0.01	2.625	0.29	0.00	6.7	93.3	0.0	0.71	0.58	0.84	6.50	2.2	0.004	0.55	0.0	0.06	13.87	0.00	2.638	0.29	1.04	0.0	100.0	0.0	1.16	0.37	0.50	0.88	5.79	1696	240	16	0	0	0	0	logfile
✔	6ZJA	11233	2024-09-30	2020-06-28	2.0	2.10	2.09	2.1	0.006	0.86	0.0	0.06	14.31	0.01	1.974	0.60	1.37	4.1	95.9	0.0	-0.40	0.79	0.87	6.97	2.1	0.003	0.68	0.0	0.05	16.09	0.00	1.868	1.30	0.68	4.2	95.8	0.0	0.23	0.39	0.78	0.90	6.59	77951	9684	60	0	36	3191	0	logfile
✔	8F2B	28812	2024-09-25	2022-11-07	2.0	1.79	2.02	1.9	0.004	0.55	0.0	0.04	14.23	0.00	2.278	5.13	1.32	1.0	99.0	0.0	-2.02	0.54	0.74	4.60	1.9	0.003	0.59	0.0	0.04	15.90	0.00	2.469	5.23	1.42	2.2	97.8	0.0	1.49	0.94	0.55	0.75	4.98	10360	1273	13	0	16	31	0	logfile
✔	8Q27	18070	2024-09-24	2023-08-01	2.02	1.98	1.92	2.0	0.011	1.74	0.0	0.08	11.92	0.01	2.517	0.00	1.27	2.3	97.7	0.0	-1.63	0.21	0.69	8.02	2.0	0.003	0.57	0.0	0.05	15.75	0.00	2.561	0.86	0.25	3.9	96.1	0.0	-1.48	1.11	0.34	0.88	7.35	7002	453	6	0	0	0	3567	logfile
✔	7o6P	12739	2024-09-24	2021-04-12	2.04	2.55	—	2.1	0.008	0.59	0.0	0.05	11.73	0.00	2.140	6.08	0.93	1.8	98.2	0.0	-0.54	0.90	0.88	5.90	2.1	0.004	0.51	0.0	0.04	13.59	0.00	2.611	4.16	0.46	1.8	98.2	0.0	1.77	0.38	0.90	0.92	5.33	8276	1022	8	0	0	268	0	logfile
✔	8UD9	42148	2024-09-24	2023-09-28	2.04	2.16	2.10	2.1	0.004	0.56	0.0	0.04	16.94	0.00	2.235	2.23	0.15	1.7	98.3	0.0	1.27	0.81	0.90	6.09	2.1	0.006	0.70	0.0	0.05	17.37	0.01	2.395	4.07	1.35	1.6	98.4	0.0	1.43	0.39	0.82	0.91	5.98	49955	6264	58	0	2	1120	0	logfile
✔	8PNV	17786	2024-09-26	2023-07-02	2.048	1.96	2.05	2.0	0.004	0.66	0.0	0.04	17.46	0.01	2.040	3.74	2.87	1.1	98.9	0.0	2.57	0.79	0.86	5.51	2.0	0.004	0.64	0.0	0.04	16.29	0.00	2.491	3.10	2.63	1.5	98.5	0.0	2.14	1.01	0.79	0.87	5.49	13098	1626	30	0	6	522	0	logfile
✔	8SDU	40352	2024-09-23	2023-04-07	2.05	2.16	2.08	2.1	0.002	0.49	0.0	0.04	14.85	0.00	2.231	4.34	0.71	1.0	99.0	0.0	2.05	0.74	0.85	5.13	2.1	0.003	0.56	0.0	0.04	15.05	0.00	2.585	2.68	0.95	0.8	99.2	0.0	2.66	0.22	0.73	0.86	4.95	3942	500	2	0	0	70	0	logfile
✔	7QKL	14046	2024-09-23	2021-12-17	2.07	2.04	1.98	2.0	0.011	2.37	0.0	0.25	12.79	0.01	2.537	0.14	0.00	3.6	96.4	0.0	-1.75	0.40	0.83	7.75	2.0	0.003	0.61	0.0	0.05	16.88	0.00	2.619	3.82	0.25	2.7	97.3	0.0	-1.28	1.99	0.44	0.91	8.18	3468	456	6	0	0	0	0	logfile
✘	8D1G	27129	2024-09-27	2022-05-27	2.07	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16201	1735	15	0	61	620	0	logfile
✘	8G15	29662	2024-09-25	2023-02-01	2.07	2.66	1.97	2.4	0.005	0.96	0.0	0.05	16.07	0.01	2.243	5.30	1.59	5.0	95.0	0.0	-1.62	0.88	0.90	5.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10056	1336	4	0	0	0	0	logfile

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