Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TYJ	26181	2024-09-24	2022-02-13	3.3	3.29	3.45	3.3	0.004	0.62	0.0	0.05	16.63	0.00	2.161	9.16	0.44	10.3	89.6	0.1	-1.90	0.67	0.83	3.05	3.3	0.003	0.60	0.0	0.04	17.00	0.00	2.576	5.81	2.76	8.9	91.0	0.1	-1.73	0.21	0.68	0.83	2.78	6338	808	2	0	0	0	0	logfile
✔	8SiK	40508	2024-09-27	2023-04-16	2.9	3.14	2.92	3.2	0.003	0.51	0.0	0.04	15.67	0.00	2.206	6.55	0.96	1.7	98.3	0.0	2.43	0.56	0.79	4.00	3.2	0.004	0.54	0.0	0.04	16.09	0.00	2.232	4.97	2.53	1.8	98.2	0.0	2.29	0.21	0.64	0.85	3.77	15832	1984	12	0	8	0	0	logfile
✔	8DY9	27778	2024-09-26	2022-08-03	3.12	3.48	3.21	3.4	0.003	0.52	1.0	0.04	17.51	0.00	2.007	5.95	0.00	4.5	95.5	0.0	0.42	0.76	0.78	2.45	3.4	0.004	0.54	1.0	0.04	18.19	0.00	2.184	3.16	0.48	5.3	94.7	0.0	0.31	0.21	0.77	0.80	2.32	63435	3777	16	144	5	0	31140	logfile
✔	8P34	17383	2024-09-23	2023-05-17	2.61	2.80	2.24	2.8	0.009	1.32	0.0	0.08	11.05	0.01	2.651	0.69	0.00	5.4	94.6	0.0	-1.84	0.29	0.90	7.34	2.8	0.005	0.64	0.0	0.05	13.81	0.00	2.682	0.69	1.23	4.3	95.7	0.0	-1.79	0.21	0.28	0.88	6.57	711	94	1	0	0	0	0	logfile
✔	8JEK	36191	2024-09-25	2023-05-16	2.7	2.98	2.75	3.0	0.031	1.34	0.0	0.49	17.13	0.01	2.178	7.68	1.69	5.0	95.0	0.0	0.19	0.66	0.87	4.50	3.0	0.004	1.09	0.0	0.06	16.81	0.01	1.798	6.26	2.26	5.1	94.8	0.1	0.45	0.21	0.71	0.88	4.17	8623	1089	5	0	6	0	0	logfile
✔	8X8M	38149	2024-09-28	2023-11-27	2.37	2.78	2.36	2.7	0.002	0.49	0.0	0.04	14.22	0.00	2.178	2.38	1.48	4.1	95.9	0.0	-0.91	0.77	0.90	5.32	2.7	0.003	0.53	0.0	0.05	14.39	0.00	2.475	1.78	1.74	5.0	95.0	0.0	-0.88	0.21	0.83	0.93	5.52	17682	2325	3	0	0	0	0	logfile
✔	8GUK	34275	2024-09-26	2022-09-12	2.51	3.12	2.54	2.9	0.004	0.60	0.0	0.04	29.88	0.00	2.202	10.18	3.15	1.7	98.3	0.0	2.28	0.85	0.85	3.27	2.9	0.004	0.61	0.0	0.04	29.79	0.00	2.511	8.25	4.26	1.7	98.3	0.0	2.46	0.21	0.83	0.86	2.83	12098	765	10	294	0	0	0	logfile
✔	8A05	15048	2024-09-23	2022-05-26	3.4	3.47	3.11	3.5	0.002	0.43	0.0	0.05	12.67	0.00	2.328	2.02	0.00	2.2	97.8	0.0	0.42	0.37	0.84	2.71	3.5	0.003	0.48	0.0	0.05	14.62	0.00	2.624	2.02	1.20	1.1	98.9	0.0	0.38	0.21	0.36	0.85	2.71	764	91	2	0	5	0	0	logfile
✔	8QBN	18316	2024-09-24	2023-08-24	3.2	3.27	3.06	3.2	0.004	0.59	0.0	0.05	14.30	0.00	2.206	4.37	0.27	4.3	95.7	0.0	-0.65	0.84	0.87	3.32	3.3	0.003	0.52	0.0	0.04	15.28	0.00	2.578	3.06	1.73	4.6	95.4	0.0	-0.31	0.21	0.85	0.89	3.27	7021	897	6	0	3	0	0	logfile
✔	8SN0	40608	2024-09-26	2023-04-26	3.2	3.37	3.21	3.4	0.004	0.56	0.0	0.04	26.42	0.00	1.331	5.43	0.00	2.4	97.6	0.0	1.04	0.75	0.85	2.59	3.4	0.005	0.58	0.0	0.04	26.90	0.00	2.118	4.10	1.17	2.6	97.4	0.0	1.55	0.21	0.74	0.87	2.39	13989	1000	13	294	2	0	0	logfile
✔	7YNR	33969	2024-09-23	2022-07-31	2.9	2.79	1.55	3.2	0.003	0.46	0.0	0.05	10.05	0.00	2.424	7.49	0.00	1.7	98.3	0.0	-3.30	0.41	0.87	6.76	3.2	0.002	0.46	0.0	0.05	12.90	0.00	2.622	3.65	0.00	4.0	96.0	0.0	-1.89	0.22	0.42	0.88	5.75	2526	366	6	0	0	0	0	logfile
✔	8PSo	17858	2024-09-27	2023-07-13	2.4	2.34	2.37	2.4	0.003	0.56	0.0	0.04	18.69	0.00	1.693	2.47	1.55	2.1	97.9	0.0	1.47	0.74	0.88	4.68	2.4	0.003	0.53	0.0	0.04	18.05	0.00	1.837	1.48	1.19	2.4	97.6	0.0	1.22	0.22	0.73	0.89	4.72	16201	971	13	28	4	44	7937	logfile
✔	7UPD	26662	2024-09-27	2022-04-14	2.4	2.56	2.38	2.5	0.003	0.57	0.0	0.05	15.74	0.00	2.222	1.74	1.18	1.7	98.3	0.0	0.86	0.78	0.89	5.05	2.5	0.002	0.51	0.0	0.04	16.20	0.00	2.618	1.90	2.76	1.7	98.3	0.0	1.01	0.22	0.78	0.89	4.75	15801	2016	12	0	12	0	0	logfile
✔	8DNR	27577	2024-09-25	2022-07-11	2.8	3.02	2.87	3.0	0.003	0.52	0.0	0.05	15.27	0.00	1.992	5.07	1.47	2.4	97.5	0.1	0.42	0.66	0.84	3.88	3.0	0.003	0.50	0.0	0.05	15.50	0.00	2.532	3.36	1.65	2.7	97.3	0.0	0.79	0.22	0.68	0.85	3.77	10191	1314	6	0	12	0	0	logfile
✔	7RZT	24777	2024-09-23	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.1	0.003	0.32	0.0	0.03	15.49	0.00	2.612	5.44	0.00	0.0	100.0	0.0	6.18	0.22	0.80	0.83	2.98	2451	324	6	0	0	0	0	logfile
✔	7Y15	33557	2024-09-24	2022-06-06	2.9	3.05	2.85	3.1	0.003	0.56	0.0	0.04	16.24	0.00	2.248	7.87	2.70	2.2	97.8	0.0	1.26	0.67	0.84	3.40	3.1	0.004	0.61	0.0	0.04	16.37	0.00	2.415	7.33	2.36	3.1	96.9	0.0	1.37	0.22	0.66	0.85	3.48	8495	1109	6	0	3	0	0	logfile
✔	8SN1	40609	2024-09-28	2023-04-26	3.3	3.44	3.29	3.4	0.003	0.52	0.0	0.03	26.48	0.00	1.329	5.23	0.12	2.0	98.0	0.0	1.60	0.71	0.84	3.21	3.4	0.004	0.54	0.0	0.03	26.81	0.00	2.185	4.22	1.64	2.3	97.7	0.0	1.73	0.22	0.73	0.86	3.02	13998	1000	13	294	2	0	0	logfile
✔	8UUX	42600	2024-09-26	2023-11-02	2.74	2.87	2.62	2.9	0.002	0.63	0.0	0.05	15.62	0.01	2.133	3.59	0.95	5.7	94.2	0.1	-1.63	0.41	0.85	3.94	2.9	0.004	0.92	1.0	0.05	16.31	0.01	2.106	2.82	3.47	5.8	94.1	0.1	-1.15	0.22	0.42	0.85	3.54	12084	1532	9	0	3	310	0	logfile
✔	8JTY	36656	2024-09-23	2023-06-22	3.26	3.60	3.26	3.6	0.003	0.55	0.0	0.04	16.26	0.00	2.217	4.12	0.00	5.0	95.0	0.0	-0.56	0.57	0.78	1.67	3.6	0.003	0.58	0.0	0.04	16.43	0.00	2.349	2.59	2.50	4.8	95.2	0.0	-0.29	0.22	0.53	0.76	1.69	4274	566	2	0	0	0	0	logfile
✔	8GGL	40012	2024-09-23	2023-03-08	3.2	3.43	3.25	3.4	0.005	0.62	0.0	0.04	12.38	0.00	2.312	3.08	0.00	1.1	98.9	0.0	1.05	0.54	0.86	2.40	3.4	0.003	0.47	0.0	0.04	14.56	0.00	2.629	1.89	2.82	1.1	98.9	0.0	2.29	0.22	0.51	0.85	1.79	2151	284	2	0	1	1	0	logfile

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