Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3LoS	5137	2024-09-26	2010-02-04	4.3	2.98	—	3.0	0.008	2.44	224.0	0.19	19.87	0.01	2.259	87.93	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.004	1.20	0.0	0.05	15.74	0.01	2.369	22.62	0.00	19.4	77.4	3.2	-4.64	1.35	0.61	0.54	—	63712	8512	16	0	0	0	0	logfile
✔	8iWK	35769	2024-09-24	2023-03-30	3.0	3.18	2.97	3.2	0.010	1.10	0.0	0.06	10.00	0.01	2.313	1.92	0.00	9.2	90.8	0.0	-6.57	0.65	0.83	3.72	3.2	0.003	0.66	0.0	0.04	13.92	0.00	2.580	4.53	2.49	6.4	93.6	0.0	-1.26	1.18	0.67	0.85	2.62	8479	1090	3	0	1	0	0	logfile
✔	6YKP	10829	2024-09-25	2020-04-06	2.98	3.28	3.05	3.3	0.014	1.23	0.0	0.07	10.75	0.01	2.350	2.77	0.09	3.0	97.0	0.1	-6.56	0.59	0.85	4.85	3.3	0.003	0.72	0.0	0.04	15.48	0.00	2.354	6.36	1.57	2.9	97.0	0.1	0.60	1.07	0.60	0.86	3.17	10190	1326	9	0	0	7	0	logfile
✔	8V6o	42998	2024-09-29	2023-12-01	2.83	3.17	2.98	3.2	0.009	1.36	0.0	0.04	20.28	0.01	2.290	4.32	0.35	5.5	94.5	0.0	-6.54	0.61	0.74	3.73	3.1	0.002	0.64	0.0	0.04	18.64	0.00	2.479	7.88	1.23	5.4	94.6	0.0	0.92	1.11	0.67	0.85	3.16	22683	2560	12	0	43	44	0	logfile
✔	7V4C	31707	2024-09-23	2021-08-12	3.3	2.93	—	3.4	0.008	0.75	0.0	0.06	12.47	0.00	2.305	12.50	0.00	20.0	80.0	0.0	-6.54	0.40	0.83	2.37	3.4	0.004	0.63	0.0	0.05	17.46	0.00	2.582	4.55	9.09	9.4	90.6	0.0	-4.70	1.15	0.40	0.83	3.46	1287	186	3	0	0	0	0	logfile
✔	6GCT	4386	2024-09-25	2018-04-19	3.85	3.94	3.80	3.9	0.012	1.40	0.0	0.07	14.50	0.01	2.330	6.80	5.57	5.8	93.9	0.2	-6.53	0.67	0.83	1.60	3.9	0.004	1.01	0.0	0.05	15.59	0.00	2.488	11.84	4.89	4.6	95.4	0.0	-2.12	1.27	0.65	0.82	1.71	9672	1299	6	0	0	0	0	logfile
✔	6TQF	10550	2024-09-25	2019-12-16	3.5	3.81	—	3.7	0.007	0.99	0.0	0.05	22.16	0.01	2.092	3.00	0.09	5.2	94.8	0.0	-6.53	0.74	0.90	2.73	3.7	0.003	0.67	0.0	0.04	15.28	0.00	1.933	2.00	0.66	3.4	96.6	0.0	-3.29	0.43	0.73	0.90	2.63	10426	1268	4	0	14	0	0	logfile
✔	8GoF	34177	2024-09-23	2022-08-24	3.0	2.97	3.06	3.1	0.006	0.80	0.0	0.05	13.26	0.01	2.269	7.05	0.00	2.5	97.5	0.0	-6.52	0.44	0.81	3.59	3.1	0.004	0.59	0.0	0.04	14.40	0.00	2.630	6.75	1.14	2.0	98.0	0.0	1.63	1.48	0.42	0.81	2.78	3299	407	2	0	1	0	0	logfile
✔	7U15	26278	2024-09-24	2022-02-19	3.0	3.14	—	3.3	0.006	1.22	0.0	0.12	17.23	0.01	1.886	12.16	3.44	3.8	96.2	0.0	-6.51	0.26	0.64	1.55	3.2	0.003	0.73	0.0	0.11	16.12	0.00	2.335	10.54	4.50	16.8	83.2	0.0	-5.22	0.92	0.27	0.69	2.98	6684	405	6	0	12	0	3255	logfile
✔	8WP0	37705	2024-09-25	2023-10-08	3.4	3.57	3.31	3.5	0.005	1.11	2.0	0.06	11.22	0.01	1.379	2.88	0.00	7.8	92.2	0.0	-6.50	0.67	0.82	3.23	3.6	0.003	0.69	0.0	0.04	14.50	0.00	2.055	4.80	1.43	6.0	94.0	0.0	-2.64	0.68	0.67	0.85	2.06	9372	1217	2	0	4	0	0	logfile
✔	8GAH	29899	2024-09-24	2023-02-22	2.9	3.08	2.95	3.1	0.005	0.88	0.0	0.05	13.56	0.01	2.280	4.27	0.00	5.9	94.1	0.0	-6.49	0.65	0.83	3.19	3.1	0.003	0.68	0.0	0.04	15.58	0.00	2.486	8.39	2.02	4.2	95.8	0.0	0.03	0.46	0.63	0.84	2.88	6424	864	4	0	4	0	0	logfile
✔	6Z7Q	11112	2024-09-27	2020-06-01	3.8	4.10	3.58	4.0	0.006	0.77	0.0	0.05	14.47	0.00	2.176	21.13	0.00	28.6	70.7	0.7	-6.49	0.73	0.82	1.75	4.0	0.003	0.88	0.0	0.05	16.94	0.01	2.501	13.85	4.49	14.6	85.4	0.0	-4.30	1.91	0.74	0.82	1.00	16665	2080	5	0	0	0	0	logfile
✔	5o3T	3743	2024-09-25	2017-05-24	3.4	3.55	3.25	4.0	0.007	0.92	0.0	0.06	10.15	0.01	2.301	14.44	1.56	14.1	85.9	0.0	-6.47	0.53	0.63	2.13	3.5	0.004	0.70	0.0	0.05	13.33	0.00	2.459	11.09	2.03	14.9	85.1	0.0	-5.04	1.53	0.49	0.70	3.29	11360	730	10	0	0	0	5790	logfile
✔	6ZH3	11212	2024-09-24	2020-06-20	3.2	3.36	3.25	3.3	0.008	0.98	0.0	0.05	14.14	0.00	2.307	3.61	0.64	2.4	96.4	1.2	-6.47	0.73	0.80	1.66	3.3	0.004	0.71	0.0	0.04	17.94	0.00	2.382	8.98	2.87	2.5	96.3	1.2	1.06	0.73	0.77	0.85	0.84	49716	6120	36	0	0	0	0	logfile
✔	6NCV	0438	2024-09-27	2018-12-12	3.7	3.98	—	3.9	0.008	0.94	0.0	0.05	17.27	0.01	2.398	4.87	2.74	9.1	90.9	0.0	-6.46	0.73	0.84	0.57	3.9	0.004	0.68	0.0	0.04	18.49	0.00	2.426	4.94	2.28	6.1	93.9	0.0	-0.64	2.47	0.75	0.85	1.27	15456	1911	21	0	0	0	0	logfile
✔	6X2L	22011	2024-09-25	2020-05-20	2.85	2.95	—	2.9	0.009	0.96	0.0	0.06	13.68	0.01	2.078	2.99	0.00	2.5	97.5	0.0	-6.46	0.64	0.88	2.92	2.9	0.003	0.63	0.0	0.04	16.04	0.00	2.548	5.58	2.42	2.0	98.0	0.0	1.74	1.00	0.61	0.88	2.26	9396	1233	3	0	0	0	0	logfile
✔	7C1D	30269	2024-09-23	2020-05-03	3.8	4.18	—	4.3	0.004	0.71	0.0	0.05	13.99	0.00	2.367	18.87	0.00	20.4	79.6	0.0	-6.46	0.34	0.74	3.47	6.5	0.003	0.67	0.0	0.05	15.65	0.00	2.485	13.97	9.90	19.0	81.0	0.0	-4.97	2.81	0.39	0.75	3.89	2034	306	6	0	0	0	0	logfile
✔	7ALW	11820	2024-09-24	2020-10-07	3.7	3.77	3.62	3.7	0.010	0.96	0.0	0.05	15.64	0.00	2.150	15.88	0.98	17.3	82.4	0.3	-6.45	0.81	0.86	2.68	3.7	0.004	0.82	0.0	0.05	17.66	0.00	2.391	10.17	2.45	9.9	90.1	0.0	-2.25	1.95	0.79	0.84	1.49	50148	6192	18	0	0	0	0	logfile
✔	6LZ3	30022	2024-09-27	2020-02-18	3.2	3.37	3.26	3.3	0.007	1.20	0.0	0.06	17.57	0.01	2.201	4.66	3.86	8.7	90.9	0.4	-6.45	0.80	0.81	2.16	3.3	0.004	0.86	1.0	0.05	16.96	0.00	2.424	7.95	2.96	7.7	92.3	0.0	-1.91	0.67	0.80	0.84	2.51	15968	1944	8	0	4	0	0	logfile
✔	6Kio	9996	2024-09-27	2019-07-19	3.94	4.22	—	3.9	0.035	3.43	48.0	0.22	17.77	0.04	2.231	11.01	8.39	18.6	74.1	7.3	-6.45	0.56	0.66	1.26	3.8	0.003	0.75	0.0	0.04	17.41	0.00	2.377	8.16	2.64	8.2	91.4	0.4	-1.49	1.65	0.65	0.77	1.40	15091	968	3	0	0	0	7442	logfile

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