Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8V48	42968	2024-09-30	2023-11-28	3.68	4.24	3.86	3.7	0.006	0.73	0.0	0.05	11.86	0.01	2.235	4.98	2.49	2.7	97.3	0.0	-0.34	0.81	0.70	1.38	3.8	0.003	0.66	0.0	0.04	14.05	0.00	2.351	11.91	1.62	3.1	96.9	0.0	1.02	1.26	0.84	0.79	1.34	25334	3141	15	0	6	0	0	logfile
✔	8V47	42967	2024-09-28	2023-11-28	4.08	4.63	4.12	4.1	0.006	0.79	0.0	0.05	12.06	0.01	2.275	5.49	2.85	2.3	97.7	0.0	-0.21	0.83	0.77	—	4.1	0.003	0.58	0.0	0.04	11.93	0.00	2.343	11.15	0.04	2.8	97.2	0.0	1.30	1.58	0.84	0.81	—	20580	2548	11	0	4	0	0	logfile
✔	8V3X	42959	2024-09-29	2023-11-28	2.2	2.09	2.18	2.1	0.004	0.73	0.0	0.05	17.26	0.00	2.197	5.23	1.88	3.1	96.9	0.0	0.01	0.64	0.78	5.27	2.1	0.004	0.70	0.0	0.05	17.89	0.00	2.449	5.78	3.36	4.0	96.0	0.0	-0.22	0.79	0.63	0.77	5.09	75948	9696	42	0	0	0	0	logfile
✔	8V3L	42949	2024-09-25	2023-11-28	4.3	3.45	4.78	4.3	0.003	0.63	0.0	0.04	12.02	0.00	2.209	12.35	0.00	2.7	97.2	0.1	1.47	0.25	0.63	—	3.0	0.003	0.65	0.0	0.04	13.22	0.00	2.389	10.54	0.16	3.1	96.7	0.1	1.08	1.58	0.25	0.65	—	11282	1359	2	0	0	0	0	logfile
✔	8V3T	42953	2024-09-29	2023-11-28	2.7	2.31	2.67	2.4	0.003	0.60	0.0	0.04	15.51	0.00	2.218	6.75	2.54	2.4	97.6	0.0	-0.10	0.60	0.78	2.56	2.3	0.004	0.70	0.0	0.05	17.72	0.00	2.422	5.72	5.31	4.5	95.5	0.0	-0.91	3.65	0.63	0.80	2.67	76362	9720	42	0	0	0	0	logfile
✔	8V49	42969	2024-09-26	2023-11-28	3.62	4.40	3.75	3.8	0.003	0.80	0.0	0.05	12.61	0.01	2.306	5.13	3.08	4.8	95.2	0.0	0.10	0.77	0.77	1.50	3.9	0.004	0.68	0.0	0.04	14.91	0.00	2.447	13.34	1.72	3.5	96.5	0.0	1.25	2.99	0.78	0.81	1.42	12834	1586	5	0	1	0	0	logfile
✔	8V3R	42951	2024-09-23	2023-11-28	3.4	3.53	3.28	3.5	0.012	1.58	0.0	0.09	12.46	0.01	1.385	1.56	0.24	2.2	97.8	0.0	-0.46	0.66	0.75	4.33	3.5	0.004	0.63	0.0	0.04	15.35	0.00	1.970	7.54	2.43	2.6	97.4	0.0	0.53	1.38	0.79	0.85	3.82	3953	503	4	0	5	0	0	logfile
✔	8X8Q	38156	2024-09-23	2023-11-28	3.14	3.86	3.14	3.6	0.004	0.83	0.0	0.05	14.72	0.00	2.223	21.86	0.57	1.5	98.5	0.0	0.16	0.84	0.87	3.78	3.6	0.002	0.55	0.0	0.04	15.47	0.00	2.622	6.77	0.76	1.1	98.9	0.0	0.63	0.35	0.83	0.86	3.31	4949	622	3	0	1	0	0	logfile
✔	8V46	42966	2024-09-27	2023-11-28	3.09	3.67	3.19	3.5	0.004	0.59	0.0	0.05	11.45	0.00	2.079	3.85	2.58	2.1	97.9	0.0	-0.32	0.78	0.81	2.75	3.5	0.004	0.57	0.0	0.04	13.39	0.00	1.983	6.90	1.46	1.9	98.1	0.0	1.61	0.68	0.79	0.85	2.33	15632	1937	7	0	3	0	0	logfile
✔	8V3Q	42950	2024-09-23	2023-11-28	3.1	3.32	2.96	3.3	0.009	1.22	0.0	0.07	14.29	0.01	1.370	1.78	0.00	2.8	97.2	0.0	-1.29	0.66	0.76	4.11	3.3	0.003	0.58	0.0	0.04	15.28	0.00	1.885	4.21	1.64	1.4	98.6	0.0	0.83	0.53	0.77	0.85	3.46	4030	503	4	0	9	0	0	logfile
✔	8X80	38131	2024-09-29	2023-11-27	3.88	2.96	3.92	2.0	0.003	0.72	0.0	0.05	18.70	0.00	2.093	15.51	0.72	4.1	95.7	0.1	-0.19	0.68	0.62	0.95	2.0	0.004	0.76	0.0	0.05	18.17	0.00	2.463	16.03	5.14	4.8	95.0	0.2	-0.37	0.41	0.68	0.63	0.98	21890	2694	12	0	25	0	0	logfile
✔	8X82	38133	2024-09-26	2023-11-27	2.8	2.70	2.78	2.9	0.002	0.41	0.0	0.03	16.43	0.00	2.181	5.24	0.84	0.8	99.2	0.0	3.68	0.57	0.78	2.85	2.9	0.002	0.42	0.0	0.03	17.26	0.00	2.635	3.77	1.99	1.6	98.4	0.0	3.67	0.39	0.59	0.80	2.45	12004	1520	4	0	0	0	0	logfile
✔	8X81	38132	2024-09-29	2023-11-27	3.77	2.86	3.79	2.0	0.004	0.72	0.0	0.05	16.02	0.01	2.171	9.91	0.40	3.8	96.0	0.2	-0.29	0.69	0.67	0.67	2.0	0.004	0.72	0.0	0.05	15.85	0.00	2.433	11.45	4.14	4.9	95.0	0.1	-0.25	0.43	0.70	0.69	1.12	21875	2694	10	0	22	0	0	logfile
✔	8X85	38136	2024-09-27	2023-11-27	3.58	2.69	3.57	2.2	0.004	0.78	0.0	0.05	13.70	0.01	2.110	12.72	0.18	6.6	93.1	0.3	-1.14	0.70	0.69	1.67	2.1	0.004	0.81	0.0	0.05	14.86	0.00	2.439	11.75	2.47	6.5	93.3	0.3	-0.97	0.51	0.68	0.66	1.62	14490	1782	8	0	17	0	0	logfile
✔	8X83	38134	2024-09-30	2023-11-27	2.8	2.86	2.94	3.0	0.005	0.60	0.0	0.03	14.83	0.00	1.974	4.85	1.22	1.3	98.7	0.0	2.34	0.59	0.79	2.50	3.0	0.002	0.43	0.0	0.03	15.74	0.00	2.510	3.95	0.61	1.3	98.7	0.0	3.82	0.52	0.58	0.79	2.79	24482	1520	12	0	6	4	12424	logfile
✔	8X8L	38148	2024-09-27	2023-11-27	2.7	2.58	2.91	2.9	0.004	0.60	1.0	0.05	9.65	0.00	2.091	5.91	1.89	2.6	97.4	0.0	2.09	0.57	0.76	3.42	2.8	0.003	0.57	0.0	0.04	15.75	0.00	2.222	5.40	1.58	3.9	96.1	0.0	1.47	1.15	0.59	0.84	3.78	17555	1140	6	0	0	0	8704	logfile
✔	8X8o	38151	2024-09-28	2023-11-27	2.5	2.87	2.48	2.7	0.005	0.55	0.0	0.05	14.74	0.00	2.200	2.38	1.64	5.6	94.4	0.0	-1.15	0.82	0.93	5.71	2.7	0.004	0.55	0.0	0.05	14.79	0.00	2.482	1.58	1.53	6.0	94.0	0.0	-0.99	0.18	0.82	0.94	5.65	17682	2325	3	0	0	0	0	logfile
✔	8X8M	38149	2024-09-28	2023-11-27	2.37	2.78	2.36	2.7	0.002	0.49	0.0	0.04	14.22	0.00	2.178	2.38	1.48	4.1	95.9	0.0	-0.91	0.77	0.90	5.32	2.7	0.003	0.53	0.0	0.05	14.39	0.00	2.475	1.78	1.74	5.0	95.0	0.0	-0.88	0.21	0.83	0.93	5.52	17682	2325	3	0	0	0	0	logfile
✘	8X8N	38150	2024-09-27	2023-11-27	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17358	1133	7	0	2	0	8589	logfile
✔	8V3D	42946	2024-09-30	2023-11-27	2.95	3.20	3.00	3.2	0.003	0.51	0.0	0.04	17.45	0.00	1.999	6.13	2.59	3.0	97.0	0.0	2.24	0.63	0.82	3.08	3.2	0.004	0.58	0.0	0.04	17.59	0.00	2.363	4.68	3.17	2.6	97.4	0.0	2.49	0.29	0.63	0.82	2.82	25637	1578	5	0	1	0	13001	logfile

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