Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8A9Y	15288	2024-09-29	2022-06-29	3.5	4.25	3.38	3.6	0.002	0.48	0.0	0.04	9.99	0.00	2.100	8.53	0.04	4.2	95.7	0.1	0.29	0.72	0.85	2.79	3.6	0.005	0.57	0.0	0.04	11.69	0.00	1.904	6.93	1.23	5.0	94.9	0.1	-0.14	1.54	0.73	0.86	2.99	23688	2988	8	0	2	0	0	logfile
✔	8DVS	27744	2024-09-24	2022-07-29	3.0	3.15	2.97	3.2	0.002	0.47	0.0	0.04	15.92	0.00	2.271	7.41	1.32	6.8	93.2	0.0	-1.94	0.68	0.80	2.76	3.1	0.003	0.58	0.0	0.04	17.35	0.00	2.479	5.64	3.12	8.5	91.5	0.0	0.46	0.47	0.70	0.85	3.46	6058	682	3	26	3	0	0	logfile
✔	7YES	33776	2024-09-27	2022-07-06	3.4	3.49	—	3.4	0.002	0.53	0.0	0.04	14.11	0.00	2.209	4.52	0.18	6.8	92.6	0.6	0.91	0.80	0.86	2.46	3.4	0.003	0.56	0.0	0.04	15.80	0.00	2.467	3.66	1.66	6.8	92.7	0.6	1.05	0.88	0.83	0.90	2.52	14679	1863	6	0	1	0	0	logfile
✔	7EoS	31229	2024-09-30	2021-04-22	3.9	4.43	—	3.9	0.002	0.42	0.0	0.04	9.75	0.00	2.254	6.49	1.89	4.1	95.8	0.1	0.47	0.88	0.78	1.32	4.0	0.005	0.76	0.0	0.05	12.51	0.00	2.436	13.68	2.39	7.3	92.6	0.1	-0.62	2.51	0.91	0.84	1.30	24600	3106	8	0	18	0	0	logfile
✘	6RKV	4912	2024-09-27	2019-04-30	4.6	4.86	—	4.5	0.002	0.53	0.0	0.04	13.18	0.00	2.207	7.23	0.00	5.3	94.7	0.0	-1.73	0.87	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15460	1784	8	64	0	0	0	logfile
✔	7R87	24310	2024-09-25	2021-06-26	3.4	3.29	2.98	3.3	0.002	0.44	0.0	0.04	12.08	0.00	2.317	5.75	0.51	3.2	96.8	0.0	-1.48	0.61	0.80	2.20	3.3	0.003	0.62	0.0	0.04	14.50	0.00	2.464	5.71	2.20	4.4	95.6	0.0	1.13	0.69	0.73	0.91	3.39	10793	1369	4	0	0	0	0	logfile
✔	7WWV	32874	2024-09-29	2022-02-14	3.2	3.31	—	3.3	0.002	0.57	0.0	0.04	16.78	0.00	2.204	6.39	0.00	8.4	91.3	0.2	-0.65	0.74	0.80	2.46	3.3	0.003	0.60	0.0	0.04	18.41	0.00	2.436	5.30	2.66	9.6	90.2	0.2	-0.73	1.45	0.75	0.83	2.58	19622	2233	11	117	0	0	0	logfile
✔	7WK1	32555	2024-09-25	2022-01-08	3.25	3.54	—	3.6	0.002	0.44	0.0	0.04	8.42	0.00	2.212	6.55	2.94	5.2	94.7	0.1	-4.01	0.65	0.76	1.98	3.5	0.003	0.61	0.0	0.04	13.48	0.00	2.445	9.72	3.21	5.9	94.0	0.1	0.04	0.79	0.70	0.84	1.54	10200	1330	4	0	2	0	0	logfile
✔	8TDV	41174	2024-09-25	2023-07-05	3.44	3.66	3.43	3.6	0.002	0.53	0.0	0.04	14.04	0.00	2.000	6.00	0.53	7.4	92.6	0.0	-0.51	0.53	0.61	1.95	3.6	0.003	0.66	0.0	0.04	16.27	0.00	2.093	7.34	4.09	7.2	92.8	0.0	-0.06	1.35	0.53	0.67	1.41	10957	1740	8	13	2	0	0	logfile
✔	8EG0	28108	2024-09-24	2022-09-10	3.53	4.58	3.65	4.0	0.002	0.49	0.0	0.04	17.47	0.00	2.269	7.87	0.00	0.5	99.5	0.0	1.82	0.89	0.83	1.71	4.0	0.005	0.61	0.0	0.04	18.37	0.00	2.242	9.73	0.40	1.9	98.1	0.0	1.51	0.57	0.91	0.86	1.84	6031	584	4	65	0	0	0	logfile
✔	7EoR	31228	2024-09-30	2021-04-22	4.0	4.40	—	4.1	0.002	0.44	0.0	0.04	9.48	0.00	2.227	7.42	1.64	3.2	96.8	0.0	0.66	0.86	0.76	—	4.1	0.003	0.75	0.0	0.05	13.44	0.00	2.474	13.15	1.71	6.0	94.0	0.0	-0.21	0.90	0.88	0.82	—	24204	3030	8	0	16	0	0	logfile
✔	6TFJ	10492	2024-09-23	2019-11-14	2.9	3.01	2.90	3.0	0.002	0.43	0.0	0.04	9.89	0.00	2.013	6.81	0.11	8.4	91.6	0.0	-2.53	0.70	0.73	2.51	3.0	0.003	0.57	0.0	0.04	15.12	0.00	2.186	7.07	1.46	7.2	92.7	0.1	-1.07	1.32	0.71	0.76	2.14	48340	3058	4	0	0	0	24098	logfile
✔	7DRW	30828	2024-09-28	2020-12-29	4.2	4.34	—	4.3	0.002	0.53	0.0	0.04	7.88	0.00	2.196	8.15	0.00	3.0	96.9	0.1	-2.45	0.62	0.49	—	4.3	0.004	0.78	0.0	0.05	13.28	0.00	2.309	14.93	0.00	3.2	96.8	0.0	0.25	2.29	0.73	0.69	—	71650	9108	42	0	0	0	0	logfile
✔	5MBV	3460	2024-09-30	2016-11-08	3.8	4.14	—	3.8	0.002	0.51	0.0	0.04	10.21	0.00	2.172	7.06	0.74	4.7	95.2	0.1	-3.37	0.87	0.81	0.98	3.8	0.003	0.65	0.0	0.04	13.52	0.00	2.510	8.01	0.90	3.3	96.7	0.1	1.37	0.85	0.88	0.83	1.28	24118	3014	5	0	0	0	0	logfile
✔	7PX8	13691	2024-09-29	2021-10-08	3.27	3.27	—	3.2	0.002	0.52	0.0	0.04	12.52	0.01	2.236	3.53	0.05	2.2	97.8	0.0	-0.37	0.78	0.86	3.66	3.2	0.002	0.51	0.0	0.04	13.55	0.00	2.580	3.43	0.72	2.5	97.5	0.0	-0.01	0.19	0.80	0.88	3.34	21409	2798	4	0	0	0	0	logfile
✔	8EFE	28081	2024-09-24	2022-09-08	3.8	4.45	3.82	3.8	0.002	0.52	0.0	0.04	14.48	0.00	1.948	8.30	0.52	3.8	96.2	0.0	1.15	0.93	0.82	1.08	3.8	0.003	0.62	0.0	0.04	16.18	0.00	1.907	8.86	0.91	4.5	95.5	0.0	0.85	0.48	0.93	0.84	1.07	7135	886	3	0	2	0	0	logfile
✔	6PLP	20371	2024-09-26	2019-07-01	3.3	3.51	—	3.8	0.002	0.53	0.0	0.05	11.13	0.00	2.031	5.97	0.00	2.0	98.0	0.0	-4.40	0.44	0.72	3.32	3.7	0.003	0.66	0.0	0.04	13.15	0.00	2.537	8.10	2.71	2.9	97.1	0.0	-0.79	2.00	0.50	0.79	2.87	14240	1730	15	0	20	0	0	logfile
✔	8APL	15574	2024-09-29	2022-08-10	4.1	3.88	4.12	3.8	0.002	0.48	0.0	0.04	9.13	0.00	2.213	10.27	1.93	3.1	96.9	0.0	0.14	0.76	0.73	—	3.7	0.003	0.65	0.0	0.04	11.35	0.00	2.297	14.75	0.12	2.5	97.5	0.0	-0.56	1.53	0.77	0.73	—	21888	2694	6	0	0	0	0	logfile
✔	7R88	24311	2024-09-25	2021-06-26	3.5	3.76	—	3.7	0.002	0.45	0.0	0.04	12.49	0.00	2.274	5.35	1.02	3.5	96.5	0.0	-1.50	0.69	0.85	2.38	3.7	0.002	0.58	0.0	0.04	14.97	0.00	2.421	4.56	2.29	4.1	95.9	0.0	1.46	1.01	0.70	0.88	2.68	10787	1368	4	0	0	0	0	logfile
✔	7WoC	32648	2024-09-23	2022-01-21	3.35	3.49	—	3.4	0.002	0.48	0.0	0.04	9.58	0.00	2.288	6.75	4.60	6.3	93.7	0.0	-4.80	0.72	0.76	2.37	3.4	0.004	0.73	0.0	0.05	15.16	0.00	2.491	9.10	4.21	10.3	89.7	0.0	-3.07	2.06	0.75	0.84	2.61	4746	610	4	0	1	0	0	logfile

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