Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6X4S	22042	2024-09-23	2020-05-22	3.5	3.84	—	3.9	0.007	0.77	0.0	0.05	15.59	0.00	2.077	11.03	0.97	1.9	98.1	0.0	1.34	0.72	0.75	1.39	3.9	0.003	0.71	0.0	0.04	17.98	0.00	2.284	11.69	4.27	1.5	98.5	0.0	4.29	1.52	0.72	0.76	1.27	5373	706	9	0	1	0	0	logfile
✔	7JV2	22491	2024-09-23	2020-08-20	3.5	3.49	3.41	3.7	0.015	1.39	0.0	0.08	11.43	0.01	2.587	0.00	1.32	3.6	96.4	0.0	0.82	0.69	0.74	3.48	3.7	0.003	0.72	0.0	0.04	14.72	0.00	2.557	12.37	3.08	4.4	95.6	0.0	-0.84	1.29	0.71	0.76	3.91	2151	282	3	0	0	0	0	logfile
✔	6ZZU	11587	2024-09-25	2020-08-05	3.5	2.41	3.59	3.1	0.005	0.96	0.0	0.05	16.19	0.01	2.125	10.37	0.17	4.9	95.1	0.0	-4.89	0.79	0.78	3.19	3.1	0.004	0.88	0.0	0.05	17.73	0.00	2.195	20.32	3.56	5.3	94.7	0.0	-1.17	0.70	0.79	0.78	2.13	10760	1340	12	0	4	4	0	logfile
✔	7Z0L	14427	2024-09-26	2022-02-23	4.0	4.43	4.11	4.3	0.005	0.95	0.0	0.06	15.67	0.01	2.223	7.63	0.65	5.5	94.5	0.0	-0.67	0.58	0.49	—	4.4	0.003	0.69	0.0	0.04	15.20	0.00	2.359	9.86	2.84	4.4	95.6	0.0	0.45	0.98	0.59	0.52	—	13752	856	9	0	12	0	6713	logfile
✘	3J9S	6272	2024-09-25	2015-02-19	2.6	3.83	—	3.5	0.020	1.80	0.0	0.12	18.55	0.01	0.216	25.10	6.86	1.3	98.0	0.8	1.97	0.68	0.76	3.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9813	1191	6	0	15	315	0	logfile
✔	7JVA	22497	2024-09-23	2020-08-20	3.6	3.93	3.68	3.9	0.016	1.51	0.0	0.09	13.10	0.01	2.398	0.80	0.30	1.0	98.8	0.2	0.87	0.84	0.81	3.50	3.9	0.004	0.76	0.0	0.05	14.60	0.00	2.462	7.35	2.44	3.6	96.4	0.0	0.14	0.65	0.86	0.82	2.46	3248	420	4	0	3	0	0	logfile
✔	7SF7	25076	2024-09-24	2021-10-03	2.9	2.36	—	2.2	0.005	0.78	0.0	0.05	12.92	0.00	2.234	6.27	0.56	7.5	92.5	0.0	-1.73	0.75	0.74	2.07	2.1	0.003	0.62	0.0	0.04	15.62	0.00	2.499	5.08	2.68	6.8	93.2	0.0	-1.00	0.50	0.77	0.78	1.49	6776	879	5	0	0	3	0	logfile
✔	7NLL	12465	2024-09-24	2021-02-22	2.89	3.42	—	3.2	0.003	0.55	0.0	0.26	15.47	0.00	2.255	7.02	0.00	0.6	99.4	0.0	1.34	0.80	0.82	3.17	3.1	0.003	0.62	0.0	0.04	15.07	0.00	2.511	6.30	4.02	2.5	97.5	0.0	-0.09	1.21	0.82	0.87	3.45	5056	656	6	0	2	0	0	logfile
✔	7Vo0	32048	2024-09-24	2021-10-12	3.4	3.66	3.41	3.5	0.004	0.57	0.0	0.04	21.17	0.00	1.938	7.44	0.17	1.8	98.2	0.0	0.39	0.73	0.66	1.10	3.6	0.003	0.59	0.0	0.04	22.76	0.00	1.940	8.00	2.38	2.5	97.5	0.0	1.23	1.39	0.83	0.82	1.26	7661	786	14	86	18	0	0	logfile
✔	7RYC	24733	2024-09-24	2021-08-24	2.9	2.34	—	3.0	0.006	0.86	0.0	0.05	13.76	0.00	2.198	5.49	0.38	4.9	95.1	0.0	-2.98	0.80	0.77	2.64	3.0	0.004	0.65	0.0	0.04	15.82	0.00	2.300	2.49	1.75	2.8	97.2	0.0	-0.39	0.44	0.82	0.81	2.52	8277	1125	7	0	2	0	0	logfile
✔	7RR0	24649	2024-09-23	2021-08-08	3.12	3.40	—	3.4	0.004	0.97	0.0	0.06	12.28	0.01	2.327	2.79	0.00	1.4	98.6	0.0	0.12	0.75	0.77	2.73	3.4	0.003	0.76	0.0	0.04	16.08	0.00	2.484	8.22	2.25	2.6	97.4	0.0	0.06	0.67	0.76	0.80	2.73	3297	422	4	0	1	0	0	logfile
✔	8HHL	34803	2024-09-24	2022-11-16	2.87	3.25	2.89	3.1	0.004	0.50	0.0	0.04	22.36	0.00	2.126	6.49	2.29	1.4	98.6	0.0	2.28	0.77	0.81	3.37	3.1	0.004	0.57	0.0	0.04	22.89	0.00	1.923	5.39	2.50	0.8	99.2	0.0	2.97	2.37	0.82	0.85	3.72	6971	592	6	111	4	0	0	logfile
✘	8EAo	27792	2024-09-28	2022-08-29	3.2	4.04	3.15	20.0	0.003	0.60	0.0	0.05	14.09	0.00	2.197	10.56	0.10	3.6	96.4	0.0	1.03	0.18	0.04	-0.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	71628	8964	24	0	0	0	0	logfile
✔	7ZYZ	15029	2024-09-23	2022-05-25	2.47	2.56	2.40	2.2	0.007	0.87	0.0	0.05	18.66	0.01	1.973	9.47	5.45	2.8	97.2	0.0	-0.23	0.87	0.87	3.85	2.2	0.003	0.61	0.0	0.04	18.33	0.00	2.122	6.90	2.61	2.6	97.4	0.0	0.94	0.40	0.88	0.88	3.44	4349	541	2	0	2	38	0	logfile
✔	8DC2	27320	2024-09-24	2022-06-15	2.99	2.48	3.03	3.1	0.003	0.54	0.0	0.04	19.79	0.00	2.216	11.65	0.16	3.0	97.0	0.0	1.17	0.82	0.83	2.49	3.1	0.004	0.66	0.0	0.04	20.97	0.00	2.446	10.91	1.93	3.7	96.3	0.0	0.78	0.37	0.83	0.85	2.68	7296	673	4	87	0	0	0	logfile
✘	7C8K	30306	2024-09-24	2020-06-02	3.2	3.18	—	3.1	0.002	0.51	0.0	0.05	13.49	0.00	2.001	4.88	0.00	3.2	96.8	0.0	-1.52	0.82	0.78	2.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4853	596	3	0	6	0	0	logfile
✔	7VVM	32144	2024-09-24	2021-11-06	3.2	2.40	3.19	3.2	0.015	1.76	0.0	0.09	13.51	0.00	2.200	6.43	0.60	5.2	94.8	0.0	-1.17	0.60	0.71	2.55	3.2	0.003	0.56	0.0	0.04	16.21	0.00	2.551	7.58	2.74	3.8	96.2	0.0	0.61	0.56	0.65	0.73	2.32	8507	1133	6	0	0	0	0	logfile
✔	7CTF	30463	2024-09-27	2020-08-18	4.8	4.92	—	4.8	0.009	1.36	0.0	0.06	19.00	0.01	2.264	6.48	8.84	6.9	93.1	0.1	-4.50	0.77	0.73	—	4.7	0.003	0.82	0.0	0.05	14.97	0.00	2.346	15.09	0.06	6.3	93.7	0.0	-1.09	3.94	0.79	0.78	—	14504	1775	7	0	2	0	0	logfile
✘	6UJA	20794	2024-09-24	2019-10-02	3.3	3.49	—	3.4	0.014	1.49	0.0	0.09	11.59	0.01	1.802	0.19	0.14	2.7	97.1	0.2	0.28	0.82	0.82	3.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8224	1128	10	0	23	0	0	logfile
✔	7K45	22660	2024-09-23	2020-09-14	3.7	3.90	3.76	3.9	0.014	1.42	0.0	0.08	9.35	0.01	2.568	0.35	0.00	2.2	97.8	0.0	0.92	0.79	0.78	4.02	3.9	0.003	0.66	0.0	0.04	13.91	0.00	2.618	7.61	4.86	2.9	97.1	0.0	-0.17	1.28	0.81	0.80	2.72	3038	419	4	0	2	0	0	logfile

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