Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oLQ	16961	2024-09-23	2023-03-30	4.0	3.17	3.52	3.7	0.003	0.49	0.0	0.05	7.64	0.00	2.207	3.69	0.00	0.0	100.0	0.0	-0.52	0.25	0.70	—	3.5	0.002	0.49	0.0	0.05	14.47	0.00	2.564	3.28	3.20	8.7	91.3	0.0	-2.19	1.58	0.24	0.71	—	2445	160	5	0	0	0	1185	logfile
✔	8Q9E	18278	2024-09-24	2023-08-20	2.97	2.51	2.93	2.7	0.011	1.89	2.0	0.11	11.77	0.01	2.528	0.59	1.32	1.9	98.1	0.0	-1.47	0.25	0.73	5.90	2.7	0.003	0.58	0.0	0.05	16.83	0.01	2.518	1.77	0.53	1.7	98.3	0.0	-1.38	1.29	0.34	0.83	4.71	6768	432	6	0	0	0	3456	logfile
✔	8V3L	42949	2024-09-25	2023-11-28	4.3	3.45	4.78	4.3	0.003	0.63	0.0	0.04	12.02	0.00	2.209	12.35	0.00	2.7	97.2	0.1	1.47	0.25	0.63	—	3.0	0.003	0.65	0.0	0.04	13.22	0.00	2.389	10.54	0.16	3.1	96.7	0.1	1.08	1.58	0.25	0.65	—	11282	1359	2	0	0	0	0	logfile
✔	8Q9G	18280	2024-09-24	2023-08-20	2.65	1.99	2.52	2.2	0.011	1.95	0.0	0.09	10.25	0.01	2.554	0.00	0.00	1.6	98.4	0.0	-1.98	0.25	0.66	6.26	2.2	0.004	0.63	0.0	0.05	16.57	0.00	2.484	2.05	1.30	2.1	97.9	0.0	-2.20	1.19	0.34	0.84	6.63	6822	438	6	0	0	0	3480	logfile
✘	6RBE	4794	2024-09-28	2019-04-10	3.8	4.03	3.73	40.0	0.007	1.27	0.0	0.06	23.46	0.01	2.076	9.10	1.35	11.9	86.8	1.2	-4.17	0.25	0.02	0.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72721	4512	33	1750	0	0	0	logfile
✔	9Eo9	19849	2024-09-23	2024-03-14	3.3	3.30	3.20	3.4	0.016	1.57	0.0	0.10	14.49	0.01	2.638	3.72	5.88	7.3	92.7	0.0	-4.62	0.25	0.84	3.70	3.5	0.003	0.79	0.0	0.05	14.70	0.00	2.549	3.75	2.21	2.0	98.0	0.0	-2.43	1.06	0.29	0.79	3.65	1190	154	2	0	0	0	0	logfile
✔	7Yo3	33980	2024-09-24	2022-08-01	3.1	2.47	2.93	2.9	0.004	0.67	0.0	0.05	13.95	0.01	2.207	9.01	0.21	3.7	96.3	0.0	0.21	0.26	0.61	1.96	2.9	0.002	0.53	0.0	0.04	16.17	0.00	2.024	6.51	1.65	2.4	97.6	0.0	0.86	0.74	0.30	0.73	2.42	8961	1144	3	0	3	0	0	logfile
✔	8Q8Y	18265	2024-09-24	2023-08-19	2.88	2.50	2.59	2.7	0.011	1.89	4.0	0.11	12.93	0.01	2.516	0.00	0.00	2.3	97.7	0.0	-1.68	0.26	0.75	5.62	2.7	0.002	0.55	0.0	0.05	16.89	0.00	2.483	1.02	1.81	1.6	98.4	0.0	-1.49	1.19	0.35	0.88	5.36	6896	441	6	0	0	0	3521	logfile
✔	8A1S	15086	2024-09-28	2022-06-02	4.0	3.83	3.95	37.0	0.008	0.74	0.0	0.05	14.73	0.00	1.988	10.18	0.97	3.9	96.0	0.2	-0.24	0.26	0.00	—	3.4	0.003	0.71	0.0	0.04	12.82	0.00	2.357	10.63	1.37	3.2	96.6	0.2	-0.88	1.56	0.31	0.17	—	67152	8528	32	0	32	0	0	logfile
✔	7QL4	14063	2024-09-24	2021-12-19	3.2	3.36	2.99	3.5	0.011	1.86	0.0	0.10	12.28	0.01	2.511	0.28	0.00	8.3	91.7	0.0	-1.77	0.26	0.51	0.51	3.4	0.003	0.61	0.0	0.05	14.94	0.01	2.384	6.65	1.26	0.9	99.1	0.0	-1.86	3.11	0.30	0.72	3.23	7074	456	6	0	0	0	3606	logfile
✔	6SXo	10344	2024-09-27	2019-09-26	3.3	3.36	—	3.3	0.009	1.35	0.0	0.07	22.52	0.01	2.142	5.99	1.16	4.7	95.3	0.0	-4.39	0.26	0.72	2.92	3.3	0.003	0.62	0.0	0.03	22.29	0.00	2.140	8.34	3.01	3.7	96.3	0.0	-1.36	0.67	0.26	0.77	2.03	14894	973	8	326	0	0	0	logfile
✔	6iAC	4435	2024-09-24	2018-11-26	3.9	4.05	—	4.0	0.009	1.31	0.0	0.07	12.35	0.01	2.250	5.01	1.10	12.0	87.9	0.2	-4.54	0.26	0.77	1.92	4.0	0.003	0.89	0.0	0.05	16.38	0.00	2.451	9.90	5.87	8.5	91.5	0.0	-0.66	0.92	0.26	0.77	1.33	8210	1057	11	0	0	0	0	logfile
✔	9CGZ	45589	2024-09-24	2024-07-01	2.69	2.42	2.56	2.8	0.011	1.91	0.0	0.09	12.93	0.01	2.545	0.00	0.26	6.8	92.0	1.2	-2.13	0.26	0.62	4.31	2.8	0.003	0.63	0.0	0.05	17.08	0.00	2.562	5.13	1.30	7.5	92.5	0.0	-2.35	0.95	0.38	0.79	5.07	6822	438	6	0	0	0	3480	logfile
✔	6VHL	21207	2024-09-23	2020-01-10	3.3	3.60	—	3.5	0.007	1.03	0.0	0.07	15.85	0.01	1.791	14.51	4.48	14.7	85.3	0.0	-6.30	0.26	0.70	3.54	3.6	0.003	0.75	0.0	0.04	16.38	0.00	2.631	2.49	2.99	8.0	92.0	0.0	-3.08	2.72	0.27	0.69	3.28	1190	158	4	0	0	0	0	logfile
✔	6X0U	21984	2024-09-23	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.74	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.002	0.68	0.0	0.03	17.96	0.00	2.555	6.38	2.63	3.7	96.3	0.0	1.12	0.78	0.27	0.78	2.63	3091	398	4	0	0	0	0	logfile
✔	8FVG	29486	2024-09-23	2023-01-18	3.1	2.34	3.16	3.2	0.004	0.66	0.0	0.05	14.20	0.00	2.106	8.55	0.00	5.7	94.3	0.0	-0.63	0.26	0.75	2.01	3.1	0.003	0.71	1.0	0.05	16.35	0.00	2.264	6.19	3.13	6.4	93.6	0.0	-0.63	1.36	0.26	0.78	2.11	48009	6409	13	0	0	0	0	logfile
✔	7U15	26278	2024-09-24	2022-02-19	3.0	3.14	—	3.3	0.006	1.22	0.0	0.12	17.23	0.01	1.886	12.16	3.44	3.8	96.2	0.0	-6.51	0.26	0.64	1.55	3.2	0.003	0.73	0.0	0.11	16.12	0.00	2.335	10.54	4.50	16.8	83.2	0.0	-5.22	0.92	0.27	0.69	2.98	6684	405	6	0	12	0	3255	logfile
✔	8iKP	35519	2024-09-23	2023-02-28	2.98	2.59	2.85	3.0	0.013	1.99	2.0	0.05	15.08	0.00	1.973	20.34	0.00	15.6	84.4	0.0	-7.03	0.26	0.65	5.92	3.0	0.041	3.25	2.0	0.13	21.89	0.01	2.252	13.40	11.72	35.6	63.1	1.2	-6.55	2.00	0.32	0.77	3.52	2048	288	32	0	0	0	0	logfile
✔	7ZKY	14771	2024-09-23	2022-04-13	2.56	2.64	—	2.8	0.013	2.00	0.0	0.10	15.17	0.01	2.509	1.92	0.00	1.9	98.1	0.0	-3.47	0.26	0.53	3.35	2.7	0.007	0.83	0.0	0.04	17.48	0.00	2.583	10.09	3.96	8.4	91.6	0.0	-3.85	1.67	0.52	0.85	4.84	5238	642	12	0	0	0	0	logfile
✔	9CGX	45588	2024-09-24	2024-07-01	2.97	2.72	2.90	3.0	0.011	2.03	0.0	0.09	13.19	0.01	2.510	0.00	2.82	4.9	92.4	2.8	-2.56	0.26	0.63	4.86	3.1	0.003	0.62	0.0	0.05	16.17	0.00	2.536	3.45	1.03	8.1	91.7	0.2	-2.75	1.36	0.36	0.77	5.04	6960	444	6	0	0	0	3540	logfile

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