Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7DZY	30921	2024-09-28	2021-01-26	3.6	3.83	3.38	3.1	0.020	2.12	0.0	0.00	4.32	0.01	1.980	3.14	0.00	3.7	95.4	0.9	-0.42	0.43	0.27	—	3.3	0.003	0.89	0.0	0.00	5.59	0.00	2.061	1.34	0.00	12.1	87.8	0.1	-3.07	2.19	0.71	0.71	—	18708	4677	9	0	0	0	0	logfile
✔	3KTT	5148	2024-09-23	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	179.94	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	2.1	0.004	1.16	0.0	0.05	17.38	0.01	2.322	25.05	3.91	9.2	89.8	1.0	-2.48	1.77	0.31	0.41	—	3855	513	1	0	0	0	0	logfile
✔	5G2Y	3332	2024-09-26	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	22.50	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.03	0.0	0.05	28.69	0.01	2.040	55.40	0.00	0.0	0.0	0.0	—	4.00	0.88	0.78	—	13494	0	1	630	0	0	0	logfile
✔	6Q2J	20572	2024-09-26	2019-08-08	4.1	4.32	—	4.1	0.006	0.98	0.0	0.06	9.00	0.01	1.677	4.24	0.13	5.0	94.8	0.1	-3.22	0.52	0.28	—	4.2	0.003	0.77	0.0	0.05	11.92	0.00	2.242	10.60	0.00	5.0	95.0	0.0	-1.42	2.37	0.69	0.60	—	13796	1738	8	0	22	0	0	logfile
✔	9BF1	44486	2024-09-28	2024-04-16	3.1	2.28	3.13	3.8	0.003	0.48	0.0	0.04	14.85	0.00	2.174	7.67	0.00	5.3	94.7	0.0	0.71	0.47	0.28	0.12	2.0	0.003	0.57	0.0	0.04	17.08	0.00	2.483	9.41	1.90	4.5	95.5	0.0	0.67	1.45	0.72	0.73	2.05	18158	2244	2	0	0	0	0	logfile
✔	6RUo	10007	2024-09-24	2019-05-28	3.5	3.56	—	4.0	0.007	1.05	0.0	0.06	13.25	0.01	2.170	7.99	0.40	10.5	89.4	0.1	-4.99	0.53	0.29	0.05	3.5	0.004	0.83	0.0	0.05	17.67	0.01	2.032	15.38	2.12	8.2	91.8	0.0	-2.58	2.41	0.68	0.60	0.63	50792	6086	26	93	8	0	0	logfile
✔	8CR2	16802	2024-09-24	2023-03-07	4.2	4.42	4.19	5.1	0.004	1.07	1.0	0.06	13.24	0.01	1.914	20.12	0.00	5.8	94.2	0.0	-3.18	0.41	0.29	—	4.4	0.004	0.86	0.0	0.05	14.17	0.00	2.358	13.31	0.00	3.5	96.5	0.0	0.33	1.44	0.64	0.68	—	6838	855	5	0	1	0	0	logfile
✔	7U6V	26381	2024-09-26	2022-03-06	4.1	3.17	4.21	6.8	0.002	0.52	0.0	0.04	13.79	0.00	1.948	13.74	1.57	4.7	95.3	0.0	-0.16	0.64	0.29	—	6.8	0.003	0.57	0.0	0.04	13.84	0.00	2.372	8.55	1.57	5.5	94.5	0.0	-0.89	0.45	0.82	0.71	—	9997	637	14	0	0	23	4901	logfile
✔	5FN1	3236	2024-09-26	2015-11-10	3.9	4.00	—	4.7	0.009	1.18	0.0	0.07	12.98	0.00	0.877	53.81	0.00	8.8	88.4	2.8	-3.37	0.24	0.29	0.57	3.9	0.006	1.10	4.0	0.04	17.40	0.01	1.887	17.86	2.20	9.8	89.3	0.9	-0.97	2.04	0.40	0.73	1.02	61308	3906	36	90	0	0	30078	logfile
✔	6XRE	22294	2024-09-28	2020-07-12	4.6	7.52	—	4.5	0.011	1.16	1.0	0.07	10.73	0.01	0.771	5.15	0.24	7.9	91.5	0.6	-3.72	0.62	0.29	—	4.5	0.003	0.74	0.0	0.04	12.27	0.01	1.858	12.21	0.00	12.8	87.2	0.0	-3.18	0.94	0.85	0.65	—	68542	4289	18	0	9	0	34248	logfile
✔	5Li4	4052	2024-09-28	2016-07-14	4.2	5.13	—	4.0	0.053	3.07	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.4	0.004	1.02	0.0	0.05	14.11	0.01	2.275	24.65	0.00	15.2	83.7	1.1	-3.90	4.20	0.34	0.58	—	20070	2562	6	0	0	0	0	logfile
✔	8RNU	19395	2024-09-25	2024-01-11	3.4	5.41	2.49	3.9	0.010	1.04	0.0	0.05	17.19	0.01	2.104	28.22	0.32	10.1	89.9	0.0	-2.17	0.62	0.30	0.31	3.9	0.004	0.78	0.0	0.05	17.94	0.01	2.398	25.78	3.69	10.5	89.5	0.0	-2.30	0.67	0.63	0.33	0.49	10848	1320	12	0	0	0	0	logfile
✔	5G2X	3331	2024-09-28	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	21.03	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.007	1.06	0.0	0.05	25.06	0.01	1.903	37.36	5.67	23.3	75.6	1.1	-4.82	2.36	0.80	0.66	0.87	19072	487	3	704	0	0	0	logfile
✔	7Q1Z	13776	2024-09-30	2021-10-22	3.4	2.41	—	4.0	0.004	0.61	0.0	0.04	12.72	0.00	2.074	6.27	0.04	2.2	97.8	0.0	0.60	0.48	0.31	-0.02	2.2	0.004	0.75	0.0	0.05	15.22	0.00	2.471	9.67	2.11	3.0	97.0	0.0	-0.15	1.60	0.74	0.75	1.39	23694	2916	21	0	63	0	0	logfile
✔	8F0U	28781	2024-09-29	2022-11-04	3.1	3.37	3.22	3.6	0.031	1.77	0.0	0.13	9.86	0.01	2.388	0.67	0.00	0.8	99.2	0.0	0.72	0.31	0.31	0.91	3.5	0.003	0.63	0.0	0.05	14.17	0.00	2.204	5.16	1.49	5.0	95.0	0.0	-0.77	2.15	0.54	0.68	1.69	72240	4848	36	0	0	0	36756	logfile
✔	7TMC	25995	2024-09-23	2022-01-19	3.25	3.24	2.95	4.2	0.005	0.72	0.0	0.07	18.02	0.01	2.152	13.78	0.00	9.5	90.5	0.0	-4.08	0.21	0.31	-0.39	3.5	0.005	0.91	0.0	0.07	16.21	0.01	2.419	15.39	5.56	14.0	86.0	0.0	-4.26	1.85	0.35	0.76	4.23	3426	405	6	0	12	0	0	logfile
✔	7Ao8	11837	2024-09-25	2020-10-14	4.5	5.23	4.51	3.6	0.011	1.51	8.0	0.26	17.19	0.01	1.219	8.80	4.18	6.9	92.5	0.6	-3.46	0.62	0.31	—	3.6	0.007	0.96	0.0	0.05	14.44	0.01	1.935	30.72	0.09	7.6	92.3	0.1	-1.64	2.62	0.85	0.74	—	10905	1350	9	0	8	0	0	logfile
✔	8ENQ	28276	2024-09-23	2022-09-30	3.6	3.97	3.73	4.4	0.004	0.77	0.0	0.05	13.93	0.00	2.257	14.40	0.00	0.3	99.7	0.0	1.45	0.35	0.32	1.15	4.2	0.006	1.14	0.0	0.05	16.41	0.00	2.473	28.61	4.42	19.0	81.0	0.0	-4.70	2.05	0.47	0.54	3.52	5593	777	7	0	0	0	0	logfile
✔	8F7J	28905	2024-09-23	2022-11-18	4.32	4.45	4.63	8.9	0.005	0.92	0.0	0.05	15.44	0.01	2.282	15.12	0.26	5.7	94.3	0.0	-3.18	0.38	0.32	—	4.3	0.005	0.92	0.0	0.05	14.34	0.01	2.486	27.01	0.00	11.1	88.9	0.0	-3.32	2.96	0.45	0.47	—	3321	407	1	0	0	0	0	logfile
✔	6i1X	0326	2024-09-25	2018-10-30	3.7	3.83	—	3.8	0.013	1.81	34.0	0.10	14.94	0.01	0.458	50.06	4.35	7.5	90.6	1.9	-3.51	0.50	0.32	0.28	3.8	0.005	0.86	0.0	0.05	16.69	0.01	2.397	16.68	3.28	8.2	91.6	0.3	-1.84	1.03	0.65	0.61	0.89	54915	7290	15	0	0	0	0	logfile

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