Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZiR	14738	2024-09-23	2022-04-08	2.5	2.51	2.04	2.7	0.002	0.34	0.0	0.03	9.02	0.00	2.317	1.65	0.00	2.0	98.0	0.0	-3.82	0.48	0.90	7.46	2.7	0.004	0.48	0.0	0.04	12.22	0.00	2.650	0.28	0.56	2.4	97.6	0.0	-3.90	1.02	0.51	0.93	7.99	2120	255	10	0	0	50	0	logfile
✔	7LQi	23487	2024-09-24	2021-02-13	3.5	3.92	—	3.9	0.016	1.40	0.0	0.03	20.42	0.00	2.242	22.86	5.00	0.0	100.0	0.0	-3.42	0.62	0.78	4.80	3.9	0.051	2.76	0.0	0.14	23.87	0.01	2.042	118.35	19.67	24.2	75.8	0.0	-4.99	1.41	0.64	0.85	3.68	8400	800	100	0	0	0	0	logfile
✔	8SRM	40735	2024-09-23	2023-05-05	4.46	5.07	4.47	4.4	0.003	0.51	0.0	0.03	4.38	0.00	2.233	4.32	0.00	4.0	96.0	0.0	2.57	0.82	0.84	—	4.3	0.006	0.60	0.0	0.04	5.02	0.00	2.434	1.56	0.00	6.0	94.0	0.0	0.75	1.59	0.83	0.86	—	5773	1163	6	0	0	0	0	logfile
✔	8FFL	29046	2024-09-28	2022-12-09	3.47	3.31	3.44	3.4	0.002	0.49	0.0	0.03	14.39	0.00	2.199	3.88	0.14	1.1	98.9	0.0	1.72	0.70	0.86	3.45	3.4	0.002	0.46	0.0	0.04	15.26	0.00	2.550	3.34	0.90	1.4	98.6	0.0	2.35	0.27	0.70	0.86	3.10	19683	2426	8	0	4	0	0	logfile
✔	8E2H	27836	2024-09-25	2022-08-15	2.3	2.41	2.27	2.4	0.003	0.60	0.0	0.03	15.28	0.00	1.980	6.85	0.52	1.1	98.9	0.0	1.61	0.65	0.82	4.36	2.4	0.003	0.57	0.0	0.03	15.76	0.00	2.334	5.11	1.91	0.5	99.5	0.0	2.91	0.94	0.65	0.83	4.18	10412	656	2	0	0	40	5280	logfile
✔	8EX9	28655	2024-09-23	2022-10-25	2.96	3.27	3.00	3.2	0.003	0.49	0.0	0.03	24.07	0.00	2.200	13.65	0.79	4.3	95.7	0.0	-1.52	0.60	0.71	4.83	3.2	0.006	0.68	0.0	0.04	24.01	0.00	2.471	12.07	4.76	6.8	93.2	0.0	-1.31	0.25	0.63	0.73	4.32	4199	166	4	139	0	0	0	logfile
✔	7KoD	22972	2024-09-27	2020-11-08	1.655	2.30	—	1.9	0.001	0.33	0.0	0.03	8.49	0.00	2.288	0.80	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	1.9	0.004	0.50	0.0	0.03	13.79	0.00	2.412	1.44	0.36	0.6	99.4	0.0	5.22	0.82	0.87	0.93	7.98	68186	4128	48	0	0	1727	32643	logfile
✔	8BF8	16016	2024-09-23	2022-10-24	2.8	3.14	2.80	3.1	0.003	0.47	0.0	0.03	21.43	0.00	2.203	8.73	0.93	2.7	97.3	0.0	0.92	0.64	0.76	2.97	3.1	0.003	0.54	0.0	0.03	21.57	0.00	2.536	7.87	1.86	3.1	96.9	0.0	0.70	0.88	0.59	0.75	2.93	4686	302	2	111	0	0	0	logfile
✔	7oBQ	12799	2024-09-27	2021-04-23	3.9	4.22	—	3.9	0.003	0.48	0.0	0.03	17.78	0.00	2.106	9.19	2.63	2.7	97.3	0.0	1.55	0.76	0.79	0.82	3.9	0.006	0.85	0.0	0.04	19.46	0.00	1.792	17.11	2.85	4.2	95.8	0.0	0.43	1.25	0.77	0.82	1.17	16668	1642	12	165	39	0	0	logfile
✔	6ZoK	11321	2024-09-24	2020-07-07	2.8	2.96	2.77	2.9	0.003	0.52	0.0	0.03	21.49	0.00	1.989	4.05	1.48	2.2	97.8	0.0	0.55	0.74	0.86	4.30	2.9	0.003	0.60	0.0	0.04	21.97	0.00	1.755	3.76	2.34	2.2	97.8	0.0	0.82	1.12	0.75	0.90	3.93	50192	2970	26	1232	110	0	0	logfile
✔	7YG8	33811	2024-09-24	2022-07-11	2.97	3.59	3.04	3.0	0.002	0.48	0.0	0.03	24.52	0.00	2.042	13.48	0.00	0.0	0.0	0.0	—	0.89	0.82	—	3.0	0.007	0.69	0.0	0.04	24.59	0.00	1.821	17.34	0.00	0.0	0.0	0.0	—	0.40	0.91	0.90	—	8440	0	4	395	5	0	0	logfile
✔	8HAM	34596	2024-09-27	2022-10-26	4.5	4.52	4.33	3.7	0.003	0.56	0.0	0.03	25.16	0.00	2.260	9.62	0.00	1.4	98.6	0.0	2.08	0.84	0.77	—	3.7	0.004	0.61	0.0	0.04	26.67	0.00	2.426	11.36	0.00	2.5	97.5	0.0	2.02	0.76	0.87	0.84	—	17177	1288	11	330	0	0	0	logfile
✔	6L54	0837	2024-09-29	2019-10-22	3.43	3.58	—	3.5	0.002	0.49	0.0	0.03	7.60	0.00	1.978	61.71	0.79	8.8	91.2	0.0	-3.87	0.77	0.72	1.74	3.5	0.003	0.64	0.0	0.04	13.84	0.00	1.875	65.24	3.01	11.7	88.3	0.0	-1.28	0.75	0.80	0.78	1.80	20387	2608	4	0	2	0	857	logfile
✔	6HD5	0201	2024-09-25	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.79	0.0	0.04	11.83	0.00	2.476	16.34	0.00	5.6	94.2	0.2	-0.50	2.01	0.45	0.56	—	9707	1234	3	0	0	0	0	logfile
✔	7V9A	31813	2024-09-27	2021-08-24	3.94	3.46	—	3.4	0.002	0.58	0.0	0.03	18.98	0.00	2.260	6.87	0.00	5.2	94.8	0.0	-4.05	0.66	0.57	0.34	3.1	0.003	0.69	0.0	0.04	20.38	0.00	2.513	10.89	2.72	7.6	92.4	0.0	-2.11	1.87	0.72	0.68	1.24	16876	1723	10	146	0	0	0	logfile
✔	6ZoJ	11320	2024-09-29	2020-07-07	2.8	3.07	—	3.0	0.002	0.51	0.0	0.03	21.18	0.00	1.694	4.40	1.39	2.3	97.7	0.0	0.76	0.80	0.85	3.50	2.9	0.003	0.56	0.0	0.04	21.73	0.00	1.149	4.27	2.19	2.7	97.3	0.0	0.88	2.45	0.81	0.87	3.29	75783	4914	45	1704	169	0	0	logfile
✔	7WiJ	32531	2024-09-26	2022-01-03	3.17	3.08	3.01	3.2	0.002	0.50	0.0	0.03	14.49	0.00	2.243	4.52	0.00	0.4	99.6	0.0	2.75	0.70	0.85	1.82	3.2	0.003	0.51	0.0	0.03	15.58	0.00	2.626	3.20	1.66	0.6	99.4	0.0	3.52	0.28	0.71	0.87	1.45	12396	1602	6	0	0	0	0	logfile
✔	8G86	29837	2024-09-26	2023-02-17	2.3	2.24	2.41	2.5	0.003	0.50	0.0	0.03	27.26	0.00	2.275	6.71	0.95	0.9	99.1	0.0	1.60	0.69	0.83	5.02	2.5	0.004	0.62	0.0	0.04	28.89	0.00	2.104	7.04	3.64	1.2	98.8	0.0	2.56	0.91	0.69	0.85	4.76	11972	759	10	290	0	0	0	logfile
✔	6NF8	9362	2024-09-27	2018-12-19	3.48	3.99	—	3.6	0.001	0.39	0.0	0.03	17.55	0.00	1.916	3.08	0.58	10.4	88.3	1.3	-2.53	0.76	0.60	1.16	3.5	0.004	0.68	0.0	0.04	19.36	0.00	2.095	10.66	2.20	5.7	94.3	0.0	-0.27	3.19	0.84	0.79	1.28	65776	5509	33	952	147	0	0	logfile
✔	7V9C	31815	2024-09-29	2021-08-24	4.5	3.01	4.36	3.5	0.002	0.44	0.0	0.03	28.92	0.00	2.240	8.56	1.27	5.0	94.1	0.9	-0.37	0.60	0.38	—	2.9	0.005	0.84	0.0	0.04	29.66	0.01	2.296	22.85	0.08	4.8	94.9	0.3	-0.49	1.70	0.73	0.58	—	23228	1518	18	546	0	0	0	logfile

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