Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CD0	16565	2024-09-24	2023-01-29	2.42	2.00	—	2.8	0.007	1.25	0.0	0.07	17.39	0.01	2.122	3.48	2.03	3.7	96.3	0.0	-3.15	0.67	0.70	1.80	2.8	0.003	0.61	0.0	0.04	17.60	0.00	2.365	9.98	2.85	3.7	96.3	0.0	0.03	0.85	0.70	0.72	1.99	6860	837	5	1	1	4	0	logfile
✔	7SiM	25144	2024-09-26	2021-10-14	2.7	2.00	—	1.6	0.005	0.71	0.0	0.05	13.38	0.00	2.302	7.90	0.07	1.7	98.3	0.0	0.36	0.74	0.72	3.19	1.6	0.003	0.57	0.0	0.04	15.28	0.00	2.372	7.24	0.74	2.0	98.0	0.0	0.50	0.94	0.75	0.76	3.18	12826	1564	10	0	28	0	0	logfile
✔	8iKL	35516	2024-09-24	2023-02-28	2.33	2.00	2.35	1.7	0.004	0.53	0.0	0.04	12.54	0.00	2.191	5.04	0.00	1.6	98.4	0.0	1.25	0.81	0.80	4.16	1.7	0.003	0.54	0.0	0.04	15.24	0.00	2.532	5.40	1.19	2.5	97.5	0.0	1.62	0.34	0.83	0.83	3.53	6942	875	4	0	0	0	0	logfile
✔	8Q9i	18282	2024-09-23	2023-08-20	2.56	2.01	2.38	2.2	0.011	1.80	0.0	0.08	11.44	0.01	2.520	0.00	0.00	3.8	96.2	0.0	-1.34	0.29	0.75	7.51	2.3	0.003	0.57	0.0	0.05	16.84	0.00	2.517	0.29	0.52	1.4	98.6	0.0	-1.69	1.47	0.37	0.86	7.83	3411	219	3	0	0	0	1740	logfile
✔	7RXG	24730	2024-09-25	2021-08-23	2.28	2.01	—	2.3	0.008	1.27	0.0	0.05	22.39	0.00	2.211	14.00	0.18	2.5	97.4	0.2	-0.83	0.61	0.82	4.82	2.3	0.002	0.52	0.0	0.04	18.54	0.00	2.300	15.29	1.61	2.4	97.6	0.0	2.09	0.91	0.66	0.87	4.94	11380	1300	6	0	26	48	96	logfile
✔	8D33	27154	2024-09-27	2022-05-31	2.46	2.01	2.48	1.7	0.003	0.55	0.0	0.04	13.19	0.00	2.091	4.01	0.39	3.5	96.5	0.1	0.90	0.73	0.78	3.10	1.6	0.003	0.64	0.0	0.04	18.15	0.00	2.312	6.35	3.04	3.2	96.8	0.0	1.11	1.33	0.73	0.79	2.84	15272	1784	6	46	2	0	0	logfile
✔	8XZJ	38798	2024-09-24	2024-01-21	3.0	2.01	—	1.7	0.011	0.94	0.0	0.06	11.33	0.01	2.252	11.85	2.72	1.8	97.9	0.3	0.36	0.70	0.73	4.12	1.6	0.005	0.71	0.0	0.05	15.03	0.00	2.540	8.03	1.81	2.4	97.5	0.1	1.00	1.18	0.74	0.80	3.40	9106	1162	6	0	0	0	0	logfile
✔	7P0Z	13153	2024-09-26	2021-07-01	2.43	2.02	2.41	2.2	0.016	0.94	0.0	0.06	14.02	0.01	2.141	7.29	0.00	4.3	95.7	0.0	1.90	0.83	0.86	2.91	2.3	0.003	0.52	0.0	0.03	18.17	0.00	2.559	2.88	2.01	0.7	99.3	0.0	5.25	0.54	0.84	0.87	2.05	12873	1652	7	0	0	0	0	logfile
✔	7XJG	33226	2024-09-26	2022-04-17	2.51	2.02	2.63	1.6	0.005	0.71	0.0	0.05	24.50	0.01	1.962	7.64	3.44	4.1	95.9	0.0	-0.23	0.76	0.76	2.80	1.6	0.004	0.60	0.0	0.04	23.93	0.00	2.482	5.56	3.55	3.7	96.3	0.0	0.51	0.89	0.79	0.80	2.56	13167	1066	12	216	2	0	0	logfile
✔	8Q2J	18109	2024-09-23	2023-08-02	2.23	2.02	2.19	2.2	0.011	1.72	0.0	0.08	11.08	0.01	2.490	0.14	0.00	1.8	98.2	0.0	-1.62	0.29	0.75	7.51	2.2	0.005	0.65	0.0	0.05	17.45	0.00	2.433	4.07	0.50	0.2	99.8	0.0	-2.03	1.55	0.43	0.90	7.38	3507	462	6	0	0	0	0	logfile
✔	8XZH	38796	2024-09-24	2024-01-21	2.6	2.02	—	1.6	0.012	0.97	0.0	0.07	13.62	0.01	2.171	7.47	0.61	4.3	95.6	0.1	-1.34	0.77	0.83	5.30	1.8	0.003	0.58	0.0	0.04	16.37	0.00	2.457	5.52	2.24	2.5	97.5	0.0	1.14	0.48	0.77	0.85	4.08	9048	1159	6	0	0	0	0	logfile
✔	8WST	37824	2024-09-24	2023-10-17	2.4	2.03	2.39	2.4	0.002	0.45	1.0	0.04	8.87	0.00	2.158	4.97	0.22	3.1	96.9	0.0	2.41	0.64	0.75	3.44	2.4	0.003	0.61	0.0	0.04	14.84	0.00	2.523	5.22	2.77	4.2	95.7	0.1	1.09	1.45	0.64	0.80	3.78	8286	1055	6	0	0	0	0	logfile
✘	8FoZ	29357	2024-09-29	2023-01-03	2.0	2.03	2.09	2.0	0.009	0.92	0.0	0.06	15.79	0.01	2.238	2.94	1.31	0.5	99.5	0.0	0.22	0.80	0.91	7.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23648	3072	16	0	16	0	0	logfile
✔	9iKC	60655	2024-09-26	2024-06-27	1.9	2.03	1.95	2.0	0.002	0.47	0.0	0.05	15.82	0.00	2.221	3.12	0.50	2.3	97.7	0.0	0.18	0.75	0.89	6.25	2.0	0.006	0.74	0.0	0.05	15.95	0.01	2.523	2.99	1.00	2.8	97.2	0.0	-0.22	1.14	0.75	0.89	6.57	12555	1587	6	0	0	150	0	logfile
✔	8PNU	17785	2024-09-26	2023-07-02	2.12	2.03	2.12	2.1	0.004	0.64	0.0	0.04	17.64	0.01	2.038	4.41	2.87	0.7	99.3	0.0	2.57	0.82	0.87	5.05	2.1	0.004	0.69	0.0	0.04	16.25	0.00	2.374	3.36	1.91	1.5	98.5	0.0	2.11	1.68	0.81	0.88	5.52	12888	1626	30	0	12	264	0	logfile
✔	8Q9H	18281	2024-09-24	2023-08-20	2.18	2.03	2.10	2.2	0.011	1.73	0.0	0.08	10.93	0.01	2.517	0.00	0.00	2.8	97.2	0.0	-1.19	0.33	0.77	6.36	2.2	0.003	0.58	0.0	0.05	15.97	0.00	2.395	0.44	0.26	1.9	98.1	0.0	-1.76	1.80	0.41	0.86	6.33	6822	438	6	0	0	0	3480	logfile
✔	7ZGo	14709	2024-09-24	2022-04-04	2.55	2.04	2.53	2.6	0.008	1.24	0.0	0.06	16.94	0.00	2.170	9.40	0.00	3.4	96.6	0.0	1.35	0.50	0.76	3.14	2.6	0.002	0.46	0.0	0.04	16.06	0.00	2.279	7.90	1.05	2.9	97.1	0.0	2.45	1.09	0.53	0.78	3.18	7754	940	6	0	21	24	0	logfile
✔	7VDA	31912	2024-09-29	2021-09-06	2.26	2.04	2.42	2.1	0.003	0.53	0.0	0.04	17.67	0.00	2.142	7.99	2.20	2.6	97.4	0.0	1.67	0.66	0.82	4.06	2.0	0.004	0.76	1.0	0.04	18.01	0.00	2.330	8.45	2.92	2.9	97.1	0.0	0.97	0.75	0.66	0.84	4.29	23292	2976	6	0	0	0	0	logfile
✔	8AG4	15415	2024-09-25	2022-07-19	2.46	2.04	2.48	1.7	0.003	0.49	0.0	0.04	13.59	0.00	2.170	5.34	0.00	3.9	96.1	0.0	0.77	0.82	0.83	4.04	1.6	0.003	0.53	0.0	0.04	15.63	0.00	2.552	4.31	0.95	3.6	96.4	0.0	0.78	0.31	0.81	0.83	3.74	11155	1384	4	0	0	0	0	logfile
✔	7QKL	14046	2024-09-23	2021-12-17	2.07	2.04	1.98	2.0	0.011	2.37	0.0	0.25	12.79	0.01	2.537	0.14	0.00	3.6	96.4	0.0	-1.75	0.40	0.83	7.75	2.0	0.003	0.61	0.0	0.05	16.88	0.00	2.619	3.82	0.25	2.7	97.3	0.0	-1.28	1.99	0.44	0.91	8.18	3468	456	6	0	0	0	0	logfile

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