Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Q8C	18250	2024-09-24	2023-08-18	1.92	1.98	1.90	2.0	0.011	1.66	0.0	0.08	10.69	0.01	2.505	0.00	0.27	1.2	98.8	0.0	-1.44	0.21	0.65	7.52	1.9	0.002	0.52	0.0	0.05	15.47	0.00	2.540	0.60	0.54	1.7	98.3	0.0	-0.98	1.22	0.39	0.89	7.72	6618	429	6	0	0	0	3372	logfile
✔	8YMK	39396	2024-09-23	2024-03-09	3.7	3.92	1.91	7.8	0.005	1.22	1.0	0.06	11.93	0.01	2.212	16.34	0.00	14.1	84.4	1.6	-1.73	0.59	0.62	-0.11	7.7	0.003	1.05	0.0	0.06	13.71	0.00	2.609	12.81	5.26	12.3	86.4	1.3	-1.08	1.86	0.59	0.60	-0.50	2744	452	2	0	0	0	0	logfile
✘	8P6X	17510	2024-09-23	2023-05-30	1.9	1.85	1.92	1.9	0.005	0.63	0.0	0.04	16.39	0.00	2.211	7.57	0.72	2.3	97.6	0.2	1.71	0.68	0.78	5.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5284	631	7	0	2	144	0	logfile
✔	8Q27	18070	2024-09-24	2023-08-01	2.02	1.98	1.92	2.0	0.011	1.74	0.0	0.08	11.92	0.01	2.517	0.00	1.27	2.3	97.7	0.0	-1.63	0.21	0.69	8.02	2.0	0.003	0.57	0.0	0.05	15.75	0.00	2.561	0.86	0.25	3.9	96.1	0.0	-1.48	1.11	0.34	0.88	7.35	7002	453	6	0	0	0	3567	logfile
✔	8P77	17520	2024-09-23	2023-05-30	1.8	1.83	1.92	1.9	0.006	0.58	0.0	0.04	16.68	0.00	2.228	5.35	1.08	1.3	98.5	0.2	2.01	0.68	0.79	5.73	1.9	0.004	0.65	0.0	0.04	16.94	0.01	2.424	6.03	1.26	1.3	98.5	0.2	1.82	0.74	0.68	0.80	5.44	5271	630	7	0	2	137	0	logfile
✔	8CAN	16531	2024-09-28	2023-01-24	1.93	1.75	1.93	1.9	0.002	0.40	0.0	0.04	9.00	0.00	2.041	2.66	0.16	0.9	99.1	0.0	1.63	0.70	0.81	6.33	1.9	0.003	0.56	0.0	0.04	14.12	0.00	1.920	1.06	0.95	1.5	98.5	0.0	1.22	1.90	0.74	0.86	6.50	71225	4104	21	0	27	3170	33930	logfile
✔	7MBX	23749	2024-09-24	2021-04-01	1.95	2.56	1.94	2.4	0.005	0.88	1.0	0.06	12.16	0.01	2.287	2.16	0.45	1.5	98.5	0.0	-0.11	0.72	0.86	4.55	2.3	0.003	0.61	0.0	0.04	15.12	0.00	2.476	4.87	1.12	0.9	99.1	0.0	1.91	0.50	0.71	0.88	4.65	8433	1065	13	0	2	61	0	logfile
✔	8oT6	17171	2024-09-23	2023-04-20	2.0	2.14	1.94	2.0	0.007	1.17	0.0	0.07	11.96	0.01	2.631	0.51	1.52	2.7	97.3	0.0	-2.61	0.47	0.93	7.98	1.9	0.003	0.60	0.0	0.05	16.11	0.00	2.567	2.56	0.61	1.4	98.6	0.0	-1.65	2.61	0.46	0.93	7.45	2870	375	5	0	0	0	0	logfile
✔	8F0J	28758	2024-09-25	2022-11-03	2.0	1.77	1.94	1.9	0.005	0.61	1.0	0.05	15.42	0.00	2.246	4.03	0.40	1.1	98.9	0.0	-1.49	0.53	0.75	5.18	1.9	0.002	0.57	0.0	0.04	17.13	0.00	2.462	5.32	1.32	2.1	97.9	0.0	1.50	0.84	0.54	0.78	5.45	9678	1157	12	0	18	25	0	logfile
✔	8D8R	27255	2024-09-23	2022-06-08	4.1	4.18	1.95	4.1	0.011	1.25	0.0	0.06	10.92	0.01	2.512	1.08	0.00	2.1	97.9	0.0	1.96	0.59	0.61	—	4.1	0.004	0.78	0.0	0.05	13.44	0.01	2.344	14.13	0.28	7.6	92.4	0.0	-0.69	1.89	0.63	0.67	—	3323	425	4	0	1	0	0	logfile
✔	8P6Y	17511	2024-09-23	2023-05-30	1.9	1.73	1.95	1.9	0.005	0.60	0.0	0.04	17.03	0.00	2.148	3.62	0.36	1.0	98.9	0.2	1.99	0.68	0.84	6.33	1.9	0.004	0.68	0.0	0.04	17.01	0.01	2.160	4.01	1.08	1.3	98.5	0.2	1.72	0.75	0.68	0.85	6.30	5266	630	7	0	3	158	0	logfile
✔	6QJM	4564	2024-09-23	2019-01-24	3.3	3.49	1.95	3.4	0.010	1.01	0.0	0.07	8.06	0.01	2.408	6.17	0.00	9.1	90.9	0.0	-2.36	0.38	0.76	3.31	3.5	0.002	0.57	0.0	0.05	13.50	0.00	2.547	3.93	1.90	3.0	97.0	0.0	-2.29	1.61	0.33	0.72	3.64	846	111	3	0	0	0	0	logfile
✔	8PPo	17806	2024-09-23	2023-07-07	2.0	2.30	1.95	2.2	0.008	1.20	1.0	0.07	13.41	0.01	2.625	0.29	0.00	6.7	93.3	0.0	0.71	0.58	0.84	6.50	2.2	0.004	0.55	0.0	0.06	13.87	0.00	2.638	0.29	1.04	0.0	100.0	0.0	1.16	0.37	0.50	0.88	5.79	1696	240	16	0	0	0	0	logfile
✔	9iKC	60655	2024-09-26	2024-06-27	1.9	2.03	1.95	2.0	0.002	0.47	0.0	0.05	15.82	0.00	2.221	3.12	0.50	2.3	97.7	0.0	0.18	0.75	0.89	6.25	2.0	0.006	0.74	0.0	0.05	15.95	0.01	2.523	2.99	1.00	2.8	97.2	0.0	-0.22	1.14	0.75	0.89	6.57	12555	1587	6	0	0	150	0	logfile
✔	6ZRF	11380	2024-09-23	2020-07-13	3.6	3.66	1.96	3.6	0.010	1.07	0.0	0.04	13.34	0.00	1.993	42.14	0.00	4.9	95.1	0.0	-6.22	0.67	0.79	1.84	3.7	0.005	0.71	0.0	0.04	14.65	0.00	2.590	16.24	5.00	11.7	88.3	0.0	-5.84	0.50	0.68	0.81	2.62	2220	300	12	0	0	0	0	logfile
✔	8G17	29664	2024-09-25	2023-02-01	1.98	1.88	1.96	2.0	0.004	0.64	0.0	0.05	15.70	0.00	2.172	5.82	0.76	3.3	96.7	0.0	0.61	0.51	0.71	6.43	2.0	0.003	0.67	0.0	0.05	15.97	0.01	2.415	1.20	1.14	3.0	97.0	0.0	0.45	1.21	0.72	0.87	6.83	10016	1336	4	0	0	0	0	logfile
✔	8P6V	17508	2024-09-23	2023-05-30	1.9	1.76	1.97	1.9	0.005	0.62	0.0	0.04	16.30	0.00	2.221	5.67	1.26	1.8	98.1	0.2	1.53	0.64	0.77	5.52	1.9	0.005	0.69	0.0	0.05	16.84	0.01	2.544	6.75	2.35	1.6	98.2	0.2	1.00	0.77	0.65	0.78	5.32	5243	630	7	0	2	138	0	logfile
✘	8G15	29662	2024-09-25	2023-02-01	2.07	2.66	1.97	2.4	0.005	0.96	0.0	0.05	16.07	0.01	2.243	5.30	1.59	5.0	95.0	0.0	-1.62	0.88	0.90	5.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10056	1336	4	0	0	0	0	logfile
✔	7QKL	14046	2024-09-23	2021-12-17	2.07	2.04	1.98	2.0	0.011	2.37	0.0	0.25	12.79	0.01	2.537	0.14	0.00	3.6	96.4	0.0	-1.75	0.40	0.83	7.75	2.0	0.003	0.61	0.0	0.05	16.88	0.00	2.619	3.82	0.25	2.7	97.3	0.0	-1.28	1.99	0.44	0.91	8.18	3468	456	6	0	0	0	0	logfile
✔	7STW	25437	2024-09-27	2021-11-15	2.37	2.44	1.98	2.4	0.002	0.50	0.0	0.04	12.97	0.00	1.947	1.92	0.00	1.2	98.8	0.0	0.17	0.74	0.80	2.93	2.4	0.003	0.54	0.0	0.04	17.66	0.00	2.072	3.38	1.74	1.9	98.1	0.0	3.06	0.63	0.75	0.83	2.32	16829	2040	36	0	24	257	0	logfile

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