Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XSF	38618	2024-09-27	2024-01-09	2.16	2.17	2.18	1.8	0.003	0.59	0.0	0.04	12.92	0.01	2.140	6.66	0.19	3.5	96.4	0.1	0.99	0.73	0.69	2.89	1.9	0.004	0.69	1.0	0.05	15.91	0.01	2.010	6.40	2.54	3.3	96.6	0.1	0.51	1.09	0.79	0.77	2.79	9736	1221	6	0	5	0	0	logfile
✔	7S8P	24900	2024-09-24	2021-09-18	2.6	2.11	2.62	1.8	0.005	0.75	0.0	0.05	12.74	0.00	2.183	3.18	0.00	5.8	94.2	0.0	-2.01	0.73	0.75	4.73	1.9	0.003	0.64	0.0	0.04	15.29	0.00	2.480	1.72	3.23	5.1	94.9	0.0	0.29	0.36	0.84	0.84	3.97	8093	1089	6	0	1	0	0	logfile
✔	8TAU	41142	2024-09-25	2023-06-27	3.5	3.03	3.36	1.8	0.006	0.79	0.0	0.00	7.52	0.01	2.188	4.55	0.00	2.1	97.9	0.0	-2.34	0.73	0.66	—	2.2	0.005	0.79	0.0	0.00	5.28	0.00	1.985	7.43	0.00	15.9	84.0	0.0	-2.66	0.72	0.78	0.74	—	54106	9002	25	0	4	0	18087	logfile
✔	7A5V	11657	2024-09-29	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.59	0.0	0.09	14.87	0.02	0.000	2.35	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	1.8	0.003	0.63	0.0	0.05	13.97	0.00	0.000	4.30	0.52	0.5	99.5	0.0	1.92	0.34	0.71	0.86	6.10	21155	2275	30	0	85	1015	0	logfile
✔	8P2S	17373	2024-09-25	2023-05-16	2.4	2.06	2.43	1.8	0.003	0.54	0.0	0.04	12.82	0.00	2.120	8.76	3.01	4.7	95.2	0.1	0.29	0.79	0.75	4.06	1.8	0.004	0.68	0.0	0.05	16.47	0.00	1.996	10.22	1.65	6.0	93.9	0.1	0.26	0.54	0.80	0.79	3.74	9694	1201	4	0	6	0	0	logfile
✔	8J24	35944	2024-09-24	2023-04-14	2.6	2.10	2.66	1.8	0.002	0.55	2.0	0.06	18.15	0.00	2.131	6.42	3.11	1.9	97.9	0.2	1.18	0.80	0.79	2.75	1.6	0.002	0.56	0.0	0.04	18.15	0.00	2.417	6.31	3.76	3.6	96.4	0.0	1.29	1.10	0.81	0.82	2.80	8626	1105	6	0	1	0	0	logfile
✔	8EZQ	28748	2024-09-28	2022-11-01	3.7	2.65	—	1.8	0.003	0.61	0.0	0.04	11.91	0.00	2.048	17.77	0.42	9.6	90.4	0.0	0.31	0.74	0.75	1.10	1.8	0.004	0.81	0.0	0.04	15.80	0.00	2.372	13.82	3.51	9.5	90.4	0.2	-0.14	0.95	0.75	0.75	0.93	20456	2545	2	0	0	0	0	logfile
✔	8Q98	18271	2024-09-24	2023-08-20	1.75	1.75	1.77	1.8	0.011	1.66	0.0	0.07	9.83	0.01	2.543	0.00	0.00	0.5	99.5	0.0	-0.80	0.22	0.65	8.64	1.8	0.002	0.51	0.0	0.05	13.42	0.00	2.608	1.42	0.51	1.1	98.9	0.0	-0.45	0.90	0.43	0.90	8.04	7032	450	6	0	0	0	3588	logfile
✔	7M3G	23654	2024-09-26	2021-03-18	2.5	2.29	—	1.8	0.007	0.96	0.0	0.06	17.28	0.01	2.281	2.21	0.93	3.0	97.0	0.0	-2.02	0.84	0.85	3.70	1.8	0.003	0.60	0.0	0.04	17.04	0.00	2.302	3.13	2.72	3.7	96.3	0.0	0.14	0.34	0.85	0.87	3.49	13298	1627	11	0	41	0	0	logfile
✔	7FiJ	31599	2024-09-23	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.6	0.004	0.80	0.0	0.05	11.52	0.00	2.490	9.16	7.50	11.3	88.7	0.0	-1.47	0.69	0.61	0.55	2.86	3061	561	1	0	0	0	0	logfile
✔	7VD9	31911	2024-09-27	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	7.80	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.003	0.57	0.0	0.04	17.40	0.00	2.480	6.15	1.34	3.4	96.6	0.0	0.42	0.29	0.58	0.73	3.74	16426	1991	8	0	8	0	0	logfile
✔	7WiG	32529	2024-09-24	2022-01-03	2.7	2.14	—	1.8	0.006	0.75	0.0	0.05	13.30	0.00	2.192	6.75	0.00	2.0	98.0	0.0	1.11	0.78	0.77	3.19	1.8	0.003	0.58	0.0	0.04	15.29	0.00	2.518	4.61	1.43	2.0	98.0	0.0	1.47	0.34	0.79	0.80	3.27	8931	1139	6	0	1	0	0	logfile
✔	7RPo	24618	2024-09-25	2021-08-03	4.16	2.77	—	1.8	0.003	0.50	0.0	0.04	16.98	0.00	1.759	6.97	1.64	8.5	91.5	0.0	-2.01	0.74	0.71	—	1.8	0.003	0.74	0.0	0.04	18.35	0.00	2.022	9.33	0.00	9.1	90.9	0.0	-2.14	2.27	0.75	0.71	—	10602	1179	9	62	5	0	0	logfile
✔	8SZH	40916	2024-09-28	2023-05-29	3.1	2.21	—	1.8	0.006	0.78	2.0	0.11	14.62	0.01	2.196	4.04	0.00	3.8	96.2	0.0	-0.33	0.82	0.82	2.95	1.8	0.003	0.53	0.0	0.04	15.75	0.00	2.452	2.75	1.66	3.7	96.3	0.0	0.03	0.35	0.83	0.84	2.47	18062	2267	10	0	24	1	0	logfile
✔	8D37	27155	2024-09-27	2022-05-31	2.65	2.08	2.72	1.8	0.003	0.52	0.0	0.04	12.72	0.00	1.962	4.63	0.32	3.7	96.3	0.0	0.95	0.66	0.73	1.85	1.7	0.005	0.89	1.0	0.04	18.30	0.01	2.075	11.37	4.13	3.9	96.1	0.0	0.54	0.73	0.67	0.74	1.51	15314	1784	6	48	2	0	0	logfile
✔	8WMH	37652	2024-09-26	2023-10-03	2.6	2.23	2.67	1.8	0.003	0.54	0.0	0.04	19.42	0.00	2.196	9.02	0.36	4.1	95.9	0.0	-0.02	0.60	0.62	2.31	1.8	0.004	0.59	0.0	0.04	20.27	0.00	2.512	7.27	1.81	4.5	95.5	0.0	-0.18	0.66	0.73	0.74	2.32	12942	1198	4	141	0	0	0	logfile
✘	9AVG	43901	2024-09-27	2024-03-02	3.6	2.11	—	1.8	0.005	0.69	0.0	0.04	12.94	0.01	2.112	8.93	0.00	3.2	96.8	0.0	-0.83	0.76	0.75	2.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17498	2210	13	0	25	0	0	logfile
✔	7Z0o	14428	2024-09-26	2022-02-23	2.8	1.99	2.70	1.8	0.004	0.66	0.0	0.04	19.64	0.00	2.189	6.20	1.42	1.7	98.3	0.0	1.08	0.68	0.73	3.27	1.7	0.004	0.58	0.0	0.04	21.11	0.00	2.557	7.49	5.15	1.8	98.2	0.0	1.74	0.81	0.77	0.79	3.37	11864	1256	10	78	0	0	0	logfile
✔	7C7S	30301	2024-09-25	2020-05-26	2.9	2.38	—	1.8	0.006	0.78	0.0	0.05	13.96	0.01	2.153	7.86	0.00	3.7	96.3	0.0	-2.62	0.83	0.80	2.82	1.8	0.004	0.73	0.0	0.05	15.10	0.00	2.416	7.13	2.37	3.5	96.5	0.0	0.31	0.59	0.85	0.83	2.62	10915	1355	4	0	9	0	0	logfile
✔	7EFC	31083	2024-09-23	2021-03-21	1.7	1.76	1.76	1.9	0.032	3.16	16.0	0.09	14.88	0.02	0.001	2.15	2.15	2.5	96.6	0.8	-0.84	0.75	0.84	6.42	1.9	0.004	0.77	0.0	0.05	14.45	0.00	2.635	4.29	0.27	4.2	95.8	0.0	-0.32	0.47	0.80	0.85	6.72	4004	480	8	0	4	156	0	logfile

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