Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5FN5	3240	2024-09-25	2015-11-10	4.3	4.62	—	4.3	0.012	1.85	28.0	0.11	18.82	0.01	2.074	13.59	14.00	11.4	84.3	4.3	-1.91	0.65	0.62	—	4.3	0.004	0.86	0.0	0.04	13.91	0.01	2.341	18.06	0.00	8.3	91.0	0.7	-0.89	1.02	0.69	0.79	—	9645	1227	4	0	0	0	0	logfile
✔	5FN1	3236	2024-09-26	2015-11-10	3.9	4.00	—	4.7	0.009	1.18	0.0	0.07	12.98	0.00	0.877	53.81	0.00	8.8	88.4	2.8	-3.37	0.24	0.29	0.57	3.9	0.006	1.10	4.0	0.04	17.40	0.01	1.887	17.86	2.20	9.8	89.3	0.9	-0.97	2.04	0.40	0.73	1.02	61308	3906	36	90	0	0	30078	logfile
✔	5FNA	3241	2024-09-23	2015-11-11	4.8	4.43	—	4.2	0.013	1.51	0.0	0.08	12.32	0.01	2.219	36.54	0.00	6.0	94.0	0.0	-1.83	0.48	0.71	—	4.3	0.004	0.86	0.0	0.04	12.78	0.00	2.556	12.36	0.00	7.2	92.8	0.0	0.97	2.73	0.49	0.77	—	5328	680	8	0	0	0	0	logfile
✔	3JC2	3245	2024-09-23	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	18.51	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.004	0.91	0.0	0.05	17.36	0.01	2.543	13.06	2.68	7.2	92.1	0.6	-1.72	2.35	0.24	0.54	1.76	3911	482	4	0	32	0	0	logfile
✔	3JC6	6534	2024-09-29	2015-11-24	3.7	4.01	—	3.9	0.009	1.54	0.0	0.06	12.91	0.01	1.203	39.73	0.87	9.8	89.0	1.1	-3.87	0.79	0.76	1.43	3.9	0.004	1.03	0.0	0.05	16.96	0.01	2.438	19.90	4.79	9.8	89.4	0.8	-1.64	1.54	0.82	0.78	1.22	23732	2953	12	0	1	0	0	logfile
✔	3JCA	6441	2024-09-25	2015-11-24	4.8	4.59	—	4.5	0.012	1.49	0.0	0.07	18.84	0.01	2.370	2.63	0.00	7.2	92.8	0.0	-1.87	0.75	0.75	—	4.5	0.003	0.65	0.0	0.04	19.41	0.01	2.404	12.84	0.10	4.9	95.1	0.0	-0.01	2.46	0.76	0.77	—	11466	1226	16	80	4	0	0	logfile
✔	3JCF	6551	2024-09-26	2015-12-11	3.8	4.02	—	3.9	0.004	1.03	0.0	0.04	6.81	0.00	2.057	8.41	0.00	4.6	95.4	0.0	-1.63	0.74	0.81	2.11	3.9	0.003	0.69	0.0	0.04	12.59	0.00	1.971	11.37	1.91	3.3	96.7	0.0	1.65	0.69	0.75	0.85	1.75	14228	1745	10	0	13	0	0	logfile
✔	5GAM	8011	2024-09-28	2015-12-15	3.7	4.03	—	3.9	0.008	1.49	11.0	0.10	22.02	0.01	1.976	11.79	6.60	10.0	88.2	1.8	-2.90	0.72	0.57	1.24	3.9	0.004	0.89	0.0	0.05	21.31	0.01	2.302	16.07	3.55	7.1	92.7	0.3	-1.10	1.68	0.80	0.80	1.21	19123	2002	13	166	19	0	0	logfile
✔	3JCL	6526	2024-09-30	2015-12-21	4.0	4.03	—	4.0	0.018	1.83	9.0	0.09	9.75	0.01	2.019	2.74	0.00	5.2	94.3	0.6	-0.72	0.71	0.74	—	4.0	0.006	0.89	2.0	0.05	14.73	0.00	1.868	12.85	3.09	7.0	92.9	0.1	-0.66	1.75	0.72	0.74	—	24822	3201	3	0	0	0	0	logfile
✔	5GAQ	8015	2024-09-28	2016-01-05	3.1	3.36	—	3.2	0.006	1.02	0.0	0.08	11.97	0.00	2.289	1.94	0.80	7.3	92.7	0.0	-3.69	0.56	0.50	3.88	3.2	0.004	0.62	0.0	0.05	16.50	0.00	2.408	9.24	3.81	3.4	96.6	0.0	-2.70	0.79	0.78	0.84	3.75	20574	2592	9	0	0	0	0	logfile
✔	5Hi9	6580	2024-09-28	2016-01-11	4.4	4.53	—	4.4	0.009	1.46	20.0	0.09	13.13	0.01	2.033	23.50	0.93	7.7	91.4	0.8	-4.25	0.73	0.73	—	4.4	0.003	0.80	0.0	0.04	13.77	0.00	2.573	13.37	0.00	6.3	93.7	0.0	-1.77	2.48	0.75	0.76	—	19636	2408	4	0	0	0	0	logfile
✔	5FUU	3308	2024-09-28	2016-01-29	4.19	4.30	—	4.2	0.014	1.86	3.0	0.12	17.63	0.02	1.862	17.37	1.20	6.2	92.2	1.7	-2.38	0.69	0.72	—	4.2	0.003	0.87	0.0	0.05	11.85	0.00	2.337	11.80	0.05	6.8	92.7	0.4	-1.12	0.95	0.76	0.82	—	20735	2281	70	0	213	0	0	logfile
✔	5i08	8069	2024-09-29	2016-02-03	4.04	4.14	3.96	4.1	0.014	1.74	3.0	0.09	8.79	0.01	2.021	3.14	0.00	7.0	92.1	0.8	0.56	0.70	0.71	—	4.1	0.003	0.75	0.0	0.04	12.22	0.00	2.407	7.35	0.16	8.6	90.9	0.5	-0.97	1.59	0.73	0.79	—	22683	2874	3	0	0	0	0	logfile
✔	5iRX	8117	2024-09-26	2016-03-14	2.95	3.39	2.91	3.3	0.014	1.44	0.0	0.07	19.90	0.01	1.744	9.65	0.00	10.7	89.2	0.1	-6.45	0.67	0.77	3.80	3.4	0.004	0.74	0.0	0.04	16.66	0.00	2.446	7.45	1.63	8.9	91.1	0.0	-0.77	0.68	0.63	0.82	1.92	13162	1726	12	0	20	0	0	logfile
✔	5iS0	8119	2024-09-26	2016-03-15	3.43	3.36	3.37	3.2	0.015	1.24	0.0	0.06	12.94	0.01	1.283	5.42	0.00	10.1	89.7	0.3	-5.27	0.63	0.73	2.61	3.2	0.003	0.75	0.0	0.04	15.89	0.00	2.503	10.15	2.25	5.6	94.4	0.0	0.01	1.47	0.62	0.81	2.18	11808	1576	8	0	4	0	0	logfile
✔	5G04	3385	2024-09-27	2016-03-16	3.9	3.86	—	3.8	0.019	1.88	181.0	0.13	19.17	0.01	1.629	17.65	13.63	6.3	91.5	2.2	-2.36	0.78	0.65	0.91	3.8	0.011	0.92	1.0	0.04	18.47	0.01	1.967	18.34	3.67	5.4	94.0	0.5	0.20	1.70	0.83	0.77	0.76	65481	8322	22	0	3	0	0	logfile
✔	5G05	3388	2024-09-26	2016-03-16	3.4	3.84	—	3.5	0.016	1.81	55.0	0.10	18.98	0.01	0.612	56.69	17.76	4.5	93.6	1.8	-0.14	0.85	0.76	1.42	3.5	0.005	0.92	3.0	0.04	17.72	0.01	2.107	15.74	3.92	4.6	94.9	0.5	0.72	1.69	0.89	0.85	1.27	63181	8027	21	0	3	0	0	logfile
✔	5iYB	8136	2024-09-23	2016-03-24	3.9	3.74	—	3.9	0.009	1.66	7.0	0.07	17.15	0.01	1.115	19.56	3.37	8.7	87.2	4.1	-2.12	0.67	0.59	1.63	3.8	0.005	1.03	1.0	0.05	19.13	0.01	2.071	20.43	3.35	8.1	91.3	0.7	-1.09	1.17	0.77	0.77	1.12	47728	5577	32	150	13	0	0	logfile
✔	5iYC	8137	2024-09-23	2016-03-24	3.9	3.68	—	3.8	0.012	1.76	7.0	0.08	17.25	0.01	1.160	19.30	3.83	8.2	87.6	4.2	-2.20	0.67	0.59	1.55	3.8	0.005	1.01	0.0	0.05	19.30	0.01	1.949	19.02	3.47	8.2	91.3	0.5	-1.19	1.17	0.76	0.75	1.15	47927	5577	32	160	13	0	0	logfile
✔	3JCZ	6630	2024-09-29	2016-03-27	3.26	3.11	—	3.3	0.008	0.69	0.0	0.05	7.32	0.01	2.244	8.75	0.00	7.0	93.0	0.0	-4.42	0.77	0.85	4.34	3.3	0.005	0.68	0.0	0.05	14.10	0.00	2.484	9.62	2.16	5.6	94.4	0.0	-0.29	2.05	0.78	0.88	2.36	23286	2976	6	0	0	0	0	logfile

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