Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GS9	34226	2024-09-23	2022-09-05	2.66	2.88	2.77	2.9	0.003	0.55	0.0	0.04	11.98	0.00	2.297	3.11	0.60	5.6	93.8	0.5	-0.51	0.61	0.71	2.97	2.9	0.004	0.73	0.0	0.05	16.27	0.00	2.557	6.06	4.48	3.1	96.9	0.0	-0.82	0.82	0.63	0.75	2.50	3116	396	3	0	0	0	0	logfile
✔	8D48	27177	2024-09-23	2022-06-01	3.7	3.91	3.59	3.9	0.005	0.81	1.0	0.05	16.28	0.01	1.565	11.86	0.00	7.2	92.8	0.0	-1.11	0.72	0.79	2.07	3.9	0.004	0.73	0.0	0.05	15.91	0.01	2.438	6.61	3.05	5.5	94.5	0.0	-0.90	0.50	0.73	0.80	2.09	5545	714	4	0	2	0	0	logfile
✔	8F7J	28905	2024-09-23	2022-11-18	4.32	4.45	4.63	8.9	0.005	0.92	0.0	0.05	15.44	0.01	2.282	15.12	0.26	5.7	94.3	0.0	-3.18	0.38	0.32	—	4.3	0.005	0.92	0.0	0.05	14.34	0.01	2.486	27.01	0.00	11.1	88.9	0.0	-3.32	2.96	0.45	0.47	—	3321	407	1	0	0	0	0	logfile
✔	7RU4	24696	2024-09-23	2021-08-16	3.3	3.64	3.27	3.4	0.023	1.89	0.0	0.11	9.65	0.01	2.362	0.60	0.55	3.1	96.9	0.0	0.06	0.75	0.80	3.98	3.4	0.004	0.76	0.0	0.05	14.77	0.00	2.508	6.45	2.47	6.7	93.3	0.0	-0.86	1.35	0.76	0.82	2.42	3382	428	5	0	4	0	0	logfile
✔	7JLX	22383	2024-09-23	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.005	0.94	0.0	0.05	8.03	0.01	2.232	3.80	0.00	17.7	81.1	1.2	-3.30	2.46	0.48	0.54	—	3288	664	4	0	0	0	0	logfile
✔	7T01	25574	2024-09-23	2021-11-29	2.69	2.92	2.50	3.2	0.004	0.87	0.0	0.05	12.30	0.01	2.335	1.37	0.00	3.8	96.2	0.0	-1.08	0.71	0.83	4.37	3.2	0.004	0.97	0.0	0.05	16.12	0.01	2.484	11.85	3.75	5.7	94.3	0.0	-1.47	0.72	0.72	0.85	3.52	3343	428	3	0	0	0	0	logfile
✔	8iHK	35447	2024-09-23	2023-02-22	3.21	3.56	3.40	3.6	0.003	0.57	0.0	0.04	16.21	0.00	2.246	4.47	0.00	2.8	97.2	0.0	-0.99	0.51	0.79	1.56	3.6	0.003	0.58	0.0	0.04	17.40	0.00	2.624	3.80	5.51	3.6	96.4	0.0	0.88	0.37	0.48	0.78	1.01	2253	283	2	0	1	0	0	logfile
✔	8BER	16009	2024-09-23	2022-10-21	4.0	4.97	1.55	3.9	0.003	0.61	0.0	0.04	12.68	0.00	2.214	12.92	0.00	4.0	96.0	0.0	2.47	0.55	0.79	—	3.8	0.002	0.61	0.0	0.04	14.62	0.00	2.514	8.21	0.82	4.2	95.8	0.0	2.94	1.18	0.54	0.81	—	3309	414	3	0	0	0	0	logfile
✔	8oLU	16963	2024-09-23	2023-03-30	2.59	2.36	2.57	2.6	0.018	2.11	67.0	0.10	17.27	0.03	2.180	7.21	5.92	4.0	95.4	0.6	-2.77	0.82	0.89	4.42	2.4	0.003	0.66	1.0	0.04	17.40	0.00	2.066	8.20	1.44	1.6	98.3	0.0	1.34	1.20	0.77	0.85	3.89	48930	6316	30	0	2	0	0	logfile
✔	7VY2	32192	2024-09-23	2021-11-13	2.75	2.61	—	2.7	0.019	1.91	0.0	0.06	21.91	0.02	1.943	15.57	3.39	2.9	97.1	0.0	1.62	0.71	0.79	3.16	2.7	0.003	0.72	0.0	0.04	18.25	0.00	1.911	13.05	2.24	2.6	97.4	0.0	2.10	0.48	0.72	0.83	2.79	46292	4534	131	0	201	0	0	logfile
✔	8EX9	28655	2024-09-23	2022-10-25	2.96	3.27	3.00	3.2	0.003	0.49	0.0	0.03	24.07	0.00	2.200	13.65	0.79	4.3	95.7	0.0	-1.52	0.60	0.71	4.83	3.2	0.006	0.68	0.0	0.04	24.01	0.00	2.471	12.07	4.76	6.8	93.2	0.0	-1.31	0.25	0.63	0.73	4.32	4199	166	4	139	0	0	0	logfile
✔	7WS7	32749	2024-09-23	2022-01-28	3.4	3.83	—	3.7	0.005	0.71	0.0	0.05	14.98	0.00	1.820	9.34	0.00	5.1	94.9	0.0	-1.78	0.71	0.84	3.63	3.7	0.003	0.65	0.0	0.04	15.65	0.00	2.464	7.37	3.01	4.4	95.6	0.0	-1.09	0.96	0.70	0.87	2.81	5209	671	6	0	2	0	0	logfile
✔	7YQM	34029	2024-09-23	2022-08-08	2.89	3.15	2.89	3.2	0.005	0.58	0.0	0.05	11.88	0.00	2.294	1.86	0.17	4.7	95.3	0.0	-0.02	0.67	0.78	4.18	3.2	0.003	0.55	0.0	0.04	15.66	0.00	2.623	5.33	1.17	3.7	96.3	0.0	0.64	1.48	0.68	0.80	3.46	5656	723	1	0	0	0	0	logfile
✔	7YD1	33745	2024-09-23	2022-07-02	2.99	2.38	7.99	2.2	0.002	0.49	0.0	0.04	9.00	0.00	2.215	6.14	5.46	10.0	90.0	0.0	-4.06	0.75	0.74	3.20	2.2	0.006	0.78	0.0	0.05	13.49	0.01	2.529	9.22	2.73	10.9	89.1	0.0	-2.11	0.59	0.77	0.79	3.03	3305	428	3	0	0	0	0	logfile
✔	8DEX	27402	2024-09-23	2022-06-21	2.7	2.85	2.68	2.9	0.012	0.95	1.0	0.06	18.60	0.01	1.790	4.35	0.96	3.2	96.8	0.0	0.67	0.46	0.61	4.27	2.9	0.004	0.63	0.0	0.05	18.15	0.01	2.200	2.81	2.30	3.6	96.4	0.0	0.30	1.11	0.67	0.81	4.27	46307	2857	12	48	0	0	22829	logfile
✔	7WS6	32748	2024-09-23	2022-01-28	3.8	4.15	—	4.0	0.004	0.68	0.0	0.05	13.45	0.00	2.282	11.98	0.00	4.7	95.3	0.0	-1.37	0.67	0.73	2.81	4.0	0.004	0.77	0.0	0.05	16.57	0.00	2.517	11.69	3.36	6.1	93.9	0.0	-1.36	0.66	0.67	0.74	2.06	3531	451	3	0	0	0	0	logfile
✔	7Y7K	33668	2024-09-23	2022-06-22	4.4	4.96	5.46	4.3	0.010	1.63	0.0	0.07	13.11	0.01	2.215	33.93	3.90	10.3	86.1	3.6	-2.50	0.71	0.63	—	4.4	0.003	0.78	0.0	0.05	11.04	0.00	2.505	11.19	0.00	6.7	92.8	0.5	-1.80	1.19	0.74	0.68	—	2942	422	3	0	0	0	0	logfile
✔	6YJ5	10816	2024-09-23	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.87	0.0	0.05	13.19	0.01	2.183	4.22	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	3.3	0.005	0.75	0.0	0.05	15.14	0.01	2.499	8.18	3.68	10.9	89.1	0.0	-2.20	0.73	0.51	0.73	2.60	2061	306	1	0	0	0	0	logfile
✔	6FU8	4319	2024-09-23	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.003	0.76	0.0	0.04	15.90	0.00	2.426	9.53	0.00	8.8	90.0	1.2	-2.74	3.88	0.23	0.62	0.61	1364	82	1	0	0	0	711	logfile
✔	8AFX	15411	2024-09-23	2022-07-18	4.8	5.07	4.58	5.0	0.005	0.90	0.0	0.05	16.08	0.01	2.159	17.10	1.05	6.1	93.9	0.0	-0.47	0.60	0.65	—	5.0	0.003	0.73	0.0	0.05	12.03	0.00	2.612	10.54	0.00	6.8	93.2	0.0	-1.16	0.58	0.74	0.80	—	2498	321	1	0	0	0	0	logfile

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