Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oLL	20116	2024-09-28	2019-04-16	4.1	4.59	—	4.4	0.004	1.05	0.0	0.06	6.94	0.01	2.400	0.40	0.00	2.0	97.8	0.2	-0.51	0.67	0.58	—	4.4	0.007	1.11	0.0	0.05	7.72	0.01	2.412	8.19	0.00	16.6	82.9	0.5	-4.23	2.11	0.74	0.69	—	10426	2114	6	0	0	0	0	logfile
✔	7TKG	25968	2024-09-28	2022-01-17	4.5	7.60	4.79	4.2	0.019	2.20	0.0	0.00	6.95	0.01	2.361	0.08	0.00	4.3	94.2	1.5	-0.60	0.58	0.61	—	4.2	0.005	0.96	0.0	0.00	6.06	0.00	1.985	5.20	0.00	12.6	87.2	0.3	-1.23	1.59	0.80	0.81	—	20228	5056	27	0	0	0	0	logfile
✔	7RAK	24363	2024-09-26	2021-07-01	3.9	4.13	—	4.1	0.003	0.61	0.0	0.04	7.02	0.00	2.283	4.06	0.00	14.0	85.0	1.0	-3.87	0.62	0.61	0.78	4.1	0.002	0.63	0.0	0.04	12.39	0.00	2.521	5.43	1.23	4.8	95.0	0.2	-1.13	1.70	0.65	0.66	0.55	61296	8112	32	0	16	0	0	logfile
✔	8TAR	41140	2024-09-25	2023-06-27	4.0	3.08	3.83	2.0	0.005	0.76	0.0	0.06	7.03	0.00	2.106	1.76	0.00	1.8	98.2	0.0	-1.85	0.74	0.68	—	2.6	0.005	0.79	0.0	0.04	5.33	0.00	2.041	7.07	0.00	14.9	85.1	0.0	-2.51	1.29	0.79	0.76	—	54010	8984	24	0	4	0	18053	logfile
✔	6KS7	0759	2024-09-26	2019-08-23	4.62	4.57	—	4.5	0.001	0.39	0.0	0.04	7.11	0.00	2.241	5.72	0.00	4.3	95.7	0.0	-3.50	0.70	0.62	—	4.5	0.003	0.69	0.0	0.04	12.03	0.00	2.360	12.58	0.04	3.1	96.8	0.1	0.04	1.82	0.74	0.68	—	62022	8131	16	0	0	0	0	logfile
✔	6KRE	0757	2024-09-26	2019-08-21	4.45	4.34	—	4.4	0.001	0.39	0.0	0.04	7.11	0.00	2.244	6.04	0.03	4.1	95.8	0.1	-3.50	0.61	0.56	—	4.4	0.003	0.74	0.0	0.05	12.33	0.00	2.251	12.92	0.05	4.0	95.9	0.1	-0.49	1.85	0.67	0.66	—	60321	7922	16	0	0	0	0	logfile
✔	7RFP	24444	2024-09-23	2021-07-14	4.4	4.57	—	4.3	0.014	2.06	8.0	0.12	7.12	0.01	1.581	3.60	8.00	9.5	87.5	3.0	-1.46	0.68	0.61	—	4.3	0.004	0.91	0.0	0.04	6.84	0.00	2.423	6.58	0.00	17.2	82.3	0.5	-3.77	1.47	0.81	0.76	—	5532	1114	6	0	0	0	0	logfile
✔	6KS8	0760	2024-09-26	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.86	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.003	0.71	0.0	0.05	11.64	0.00	2.304	13.95	0.01	3.7	96.2	0.0	-0.28	1.86	0.81	0.72	—	61943	8120	16	0	0	0	0	logfile
✔	6KRD	0756	2024-09-26	2019-08-21	4.38	4.25	—	4.4	0.001	0.39	0.0	0.04	7.15	0.00	2.226	5.80	0.00	4.5	95.5	0.1	-3.58	0.57	0.52	—	4.3	0.003	0.70	0.0	0.04	12.12	0.00	2.336	10.92	0.06	3.5	96.4	0.1	-0.26	1.82	0.65	0.63	—	61005	8006	16	0	0	0	0	logfile
✔	7WK3	32557	2024-09-30	2022-01-08	3.4	2.86	—	3.4	0.004	0.56	0.0	0.04	7.18	0.00	1.998	3.79	0.00	3.6	96.3	0.0	-2.17	0.65	0.57	1.77	3.3	0.004	0.74	0.0	0.05	14.53	0.00	2.471	8.94	2.06	3.6	96.4	0.0	-0.38	1.15	0.79	0.79	1.74	24805	3162	3	0	0	0	0	logfile
✔	6DWB	8924	2024-09-28	2018-06-26	3.3	3.43	—	3.4	0.007	0.66	0.0	0.04	7.21	0.01	2.161	2.34	0.00	5.1	94.9	0.0	-6.22	0.61	0.75	2.51	3.4	0.003	0.48	0.0	0.03	13.65	0.00	2.524	2.84	1.41	3.3	96.7	0.0	4.59	1.13	0.75	0.90	2.72	18360	2340	30	0	0	0	0	logfile
✘	5GW4	9540	2024-09-27	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.49	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	7VXi	32180	2024-09-30	2021-11-12	3.4	2.35	—	2.0	0.002	0.49	0.0	0.04	7.29	0.00	2.125	3.01	0.00	4.3	95.5	0.1	-1.83	0.65	0.60	1.83	2.1	0.003	0.64	0.0	0.04	13.82	0.00	2.269	8.50	2.26	3.6	96.2	0.2	-0.01	1.42	0.73	0.71	2.54	24570	3144	3	0	0	0	0	logfile
✔	3JCZ	6630	2024-09-29	2016-03-27	3.26	3.11	—	3.3	0.008	0.69	0.0	0.05	7.32	0.01	2.244	8.75	0.00	7.0	93.0	0.0	-4.42	0.77	0.85	4.34	3.3	0.005	0.68	0.0	0.05	14.10	0.00	2.484	9.62	2.16	5.6	94.4	0.0	-0.29	2.05	0.78	0.88	2.36	23286	2976	6	0	0	0	0	logfile
✔	7TRY	26103	2024-09-24	2022-01-31	3.7	4.15	—	4.0	0.004	0.80	0.0	0.05	7.34	0.01	2.261	3.44	0.00	1.7	98.3	0.0	1.03	0.67	0.74	1.05	4.0	0.006	1.05	1.0	0.05	14.27	0.00	2.359	17.34	3.99	3.6	96.4	0.0	1.55	2.52	0.69	0.79	1.24	8340	1211	6	0	0	0	0	logfile
✔	6DSo	8910	2024-09-24	2018-06-14	3.0	3.30	2.98	3.4	0.009	0.94	0.0	0.06	7.35	0.00	2.431	1.53	0.00	3.2	96.8	0.0	-4.46	0.49	0.81	6.10	3.4	0.006	0.71	0.0	0.04	14.65	0.00	2.627	6.11	1.74	9.1	90.9	0.0	-4.36	0.62	0.50	0.83	5.45	6588	828	12	0	0	0	0	logfile
✔	7WD9	32435	2024-09-28	2021-12-21	3.7	4.02	—	3.8	0.003	0.46	0.0	0.04	7.35	0.00	1.967	2.78	0.00	4.2	95.6	0.1	-1.79	0.57	0.42	0.74	3.8	0.005	0.80	0.0	0.04	13.99	0.00	2.026	13.56	2.12	7.9	92.0	0.1	-1.65	1.37	0.75	0.69	0.99	69720	4533	9	0	0	0	34404	logfile
✔	7VXE	32177	2024-09-24	2021-11-12	3.2	2.31	—	2.0	0.003	0.45	0.0	0.04	7.36	0.00	2.082	1.83	0.00	4.4	95.5	0.1	-1.79	0.61	0.54	2.41	2.1	0.003	0.57	0.0	0.04	12.66	0.00	2.177	3.25	1.01	3.7	96.2	0.2	-0.05	1.45	0.70	0.73	2.52	49296	3186	3	0	0	0	24366	logfile
✘	5GW5	9541	2024-09-26	2016-09-08	4.6	4.75	—	4.7	0.002	0.58	0.0	0.04	7.37	0.00	2.136	6.87	0.01	4.5	95.4	0.1	-3.73	0.74	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	8oWK	17239	2024-09-23	2023-04-28	3.86	3.20	3.47	4.0	0.013	3.09	0.0	0.12	7.40	0.01	2.508	14.24	3.23	0.0	100.0	0.0	0.74	0.46	0.67	5.30	4.0	0.006	0.85	0.0	0.05	14.40	0.00	2.462	17.09	0.97	6.3	93.7	0.0	-3.39	1.71	0.49	0.74	6.86	3050	400	10	0	0	0	0	logfile

• ← previous
• Page 4 of 539
• next →