Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UoY	42441	2024-09-26	2023-10-20	3.4	3.52	3.51	3.4	0.016	2.25	10.0	0.11	17.12	0.02	2.532	0.83	6.89	12.1	85.3	2.6	-3.89	0.21	0.24	0.07	3.4	0.003	0.74	0.0	0.04	17.61	0.00	2.251	11.83	6.01	10.6	89.2	0.2	-3.21	0.86	0.22	0.25	0.30	13188	872	2	0	0	0	6544	logfile
✔	6QoZ	4610	2024-09-28	2019-02-13	3.4	3.65	3.13	3.5	0.011	1.46	4.0	0.09	15.40	0.01	1.243	4.20	5.13	6.0	93.1	0.9	-3.28	0.40	0.62	0.09	3.5	0.004	0.67	0.0	0.04	15.40	0.00	2.544	5.10	3.37	3.0	97.0	0.0	-1.80	1.86	0.48	0.87	2.94	17987	2307	9	0	0	0	0	logfile
✔	7RTV	24690	2024-09-23	2021-08-15	3.96	4.06	—	4.1	0.004	0.76	0.0	0.05	24.99	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.003	0.92	0.0	0.05	17.62	0.00	2.411	14.38	4.22	2.5	97.5	0.0	3.27	0.50	0.41	0.64	0.28	2881	366	3	0	6	0	0	logfile
✔	5ZYA	6915	2024-09-27	2018-05-23	3.95	4.18	—	4.1	0.009	1.27	0.0	0.07	11.43	0.01	1.673	8.53	0.32	9.6	90.4	0.0	-4.57	0.67	0.52	0.10	4.0	0.004	0.87	0.0	0.05	15.43	0.00	2.460	15.03	2.59	6.1	93.9	0.0	-2.18	1.29	0.77	0.72	1.21	16957	2143	7	0	5	0	0	logfile
✔	8i9U	35284	2024-09-27	2023-02-07	3.1	3.25	3.24	3.3	0.001	0.42	0.0	0.04	15.88	0.00	2.250	4.20	1.78	12.1	87.2	0.7	-2.67	0.56	0.55	0.11	3.3	0.003	0.69	0.0	0.04	16.85	0.00	2.422	5.24	1.86	5.9	94.0	0.1	-0.38	1.35	0.68	0.74	0.72	65141	8483	28	0	10	0	0	logfile
✔	7A24	11615	2024-09-24	2020-08-16	3.8	3.92	—	3.8	0.009	1.16	33.0	1.08	15.35	0.01	0.850	22.90	2.62	9.6	90.1	0.3	-3.10	0.53	0.47	0.12	3.8	0.009	1.78	0.0	0.33	17.54	0.01	2.151	21.07	3.30	7.5	92.4	0.1	-1.60	1.61	0.59	0.58	0.33	49497	6253	46	0	17	0	0	logfile
✔	8GAF	29896	2024-09-30	2023-02-22	3.64	4.04	—	3.8	0.002	0.43	0.0	0.04	18.19	0.00	2.133	11.26	2.92	15.4	82.2	2.4	-3.53	0.71	0.52	0.12	3.8	0.005	0.88	0.0	0.05	19.58	0.00	2.244	29.22	2.44	11.6	88.2	0.2	-2.77	2.32	0.77	0.68	0.33	24582	2961	13	43	0	0	0	logfile
✔	6CXC	7774	2024-09-27	2018-04-02	3.9	4.14	—	4.0	0.006	1.03	0.0	0.06	11.60	0.01	2.198	9.05	0.29	6.2	93.8	0.0	-4.06	0.71	0.71	0.12	4.0	0.003	0.84	0.0	0.05	15.96	0.00	2.439	14.28	3.16	5.1	94.9	0.0	-2.26	2.13	0.73	0.76	0.04	15196	1945	18	0	6	0	0	logfile
✔	9BF1	44486	2024-09-28	2024-04-16	3.1	2.28	3.13	3.8	0.003	0.48	0.0	0.04	14.85	0.00	2.174	7.67	0.00	5.3	94.7	0.0	0.71	0.47	0.28	0.12	2.0	0.003	0.57	0.0	0.04	17.08	0.00	2.483	9.41	1.90	4.5	95.5	0.0	0.67	1.45	0.72	0.73	2.05	18158	2244	2	0	0	0	0	logfile
✔	6W7M	21571	2024-09-23	2020-03-19	3.8	3.72	—	3.6	0.002	0.58	0.0	0.03	23.74	0.00	2.031	14.77	0.10	7.4	92.3	0.3	-3.67	0.68	0.56	0.12	3.6	0.004	0.79	0.0	0.04	24.19	0.01	2.030	19.50	3.70	11.1	88.7	0.2	-2.68	1.34	0.71	0.61	0.50	50694	2319	20	1512	0	0	0	logfile
✔	7APK	11857	2024-09-29	2020-10-17	3.3	3.26	—	3.5	0.004	0.81	0.0	0.05	8.50	0.01	2.256	4.07	0.10	4.7	95.2	0.1	-2.73	0.41	0.22	0.13	3.0	0.004	0.72	0.0	0.04	13.07	0.00	2.485	9.88	1.20	5.7	94.1	0.1	1.06	1.59	0.50	0.44	0.84	72697	9893	30	0	74	0	0	logfile
✘	7CQ7	30438	2024-09-26	2020-08-08	3.55	3.95	—	4.0	0.008	1.07	0.0	0.06	10.35	0.01	1.915	5.84	0.07	9.3	90.7	0.0	-4.47	0.39	0.42	0.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13810	1766	8	0	9	0	0	logfile
✔	8EDN	28037	2024-09-23	2022-09-05	3.8	3.47	3.75	3.3	0.002	0.58	0.0	0.04	11.31	0.00	2.205	6.81	0.46	5.7	94.1	0.2	2.77	0.65	0.60	0.13	3.3	0.003	0.63	0.0	0.04	13.94	0.00	2.509	7.58	1.84	4.3	95.5	0.2	2.35	1.13	0.70	0.72	1.96	3683	579	1	0	0	0	0	logfile
✔	8D6X	27225	2024-09-28	2022-06-06	3.2	10.22	—	—	0.003	0.62	0.0	0.04	12.14	0.00	2.195	17.76	0.06	2.6	97.4	0.0	1.17	0.70	0.42	0.14	—	0.004	0.73	0.0	0.05	14.96	0.00	2.367	26.07	1.82	5.1	94.9	0.0	-0.27	4.66	0.82	0.62	0.13	68362	8957	41	0	0	0	0	logfile
✔	8T2T	40987	2024-09-27	2023-06-06	3.0	3.39	3.19	9.5	0.006	0.97	0.0	0.05	24.84	0.01	1.982	4.25	0.00	4.5	95.0	0.5	-1.78	0.45	0.06	0.14	3.0	0.007	1.14	0.0	0.05	26.47	0.01	1.703	28.77	2.93	6.3	93.7	0.0	-2.26	2.53	0.74	0.69	1.62	14876	387	5	546	12	0	0	logfile
✔	8BCP	15967	2024-09-28	2022-10-17	3.88	3.53	3.81	3.7	0.003	0.53	0.0	0.04	17.06	0.00	2.151	10.41	0.30	3.2	96.7	0.1	-0.67	0.61	0.59	0.14	3.6	0.003	0.61	0.0	0.04	17.69	0.00	2.382	9.27	3.41	2.5	97.5	0.1	-0.98	2.12	0.75	0.80	2.14	18171	2337	9	0	0	0	0	logfile
✔	8FN6	29306	2024-09-29	2022-12-27	3.7	3.97	3.74	4.0	0.003	0.65	0.0	0.04	17.58	0.00	2.196	11.03	0.60	6.0	93.9	0.0	-0.22	0.75	0.75	0.14	3.9	0.003	0.64	0.0	0.04	17.83	0.00	2.340	8.08	2.53	6.3	93.7	0.0	0.02	0.39	0.76	0.76	0.32	22421	2729	8	46	1	0	0	logfile
✔	6H5i	0140	2024-09-24	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.64	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.8	0.004	0.76	0.0	0.04	14.94	0.00	2.349	13.32	1.45	4.3	95.7	0.0	1.08	1.21	0.37	0.24	0.26	43900	5392	26	0	0	0	0	logfile
✔	7ZPJ	14855	2024-09-30	2022-04-27	3.81	3.24	3.86	6.5	0.004	0.86	0.0	0.05	15.40	0.01	2.159	2.94	0.67	3.3	96.7	0.0	0.22	0.54	0.33	0.15	3.2	0.003	0.66	0.0	0.04	17.17	0.01	2.043	8.05	1.33	3.5	96.5	0.0	0.45	1.43	0.63	0.55	0.40	23479	1355	3	55	0	0	11508	logfile
✔	7RTU	24689	2024-09-23	2021-08-15	3.89	4.06	—	4.1	0.003	0.61	0.0	0.04	20.84	0.00	2.175	7.11	0.16	3.1	96.9	0.0	4.32	0.55	0.69	0.15	4.1	0.003	0.60	0.0	0.04	16.20	0.00	2.479	5.44	2.35	2.8	97.2	0.0	4.15	0.33	0.62	0.73	0.38	5962	754	6	0	12	0	0	logfile

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