Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5A7U	3079	2024-09-23	2015-07-10	4.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	2	0	1	0	231	logfile
✔	5A8L	3099	2024-09-26	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	21.13	0.00	1.435	8.96	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.004	0.77	0.0	0.04	22.97	0.01	2.453	13.44	5.69	11.1	87.8	1.1	-2.47	1.86	0.23	0.62	0.61	12264	624	9	347	0	0	0	logfile
✔	5ACo	3121	2024-09-29	2015-08-17	4.36	4.52	—	4.3	0.012	1.98	3.0	0.11	17.67	0.02	1.986	10.73	0.29	9.1	88.9	1.9	-2.40	0.70	0.68	—	4.3	0.005	0.83	0.0	0.05	11.29	0.00	2.334	10.51	0.00	7.1	92.5	0.5	-0.96	1.60	0.82	0.84	—	21297	2415	69	0	192	0	0	logfile
✔	5ADX	2856	2024-09-23	2015-08-24	4.0	4.18	—	4.0	0.008	1.05	1.0	0.06	12.82	0.00	1.155	3.43	1.97	6.3	93.5	0.3	-2.81	0.77	0.63	—	4.0	0.004	0.71	0.0	0.04	15.09	0.00	2.350	9.17	2.37	4.3	95.7	0.0	-0.57	0.91	0.86	0.79	—	49392	4737	28	0	2569	0	0	logfile
✔	5AEY	2850	2024-09-26	2015-01-12	4.3	4.01	—	4.0	0.011	1.71	35.0	0.11	22.05	0.01	2.197	7.01	18.45	8.7	88.5	2.8	-3.27	0.64	0.81	—	3.9	0.004	0.79	0.0	0.05	15.95	0.00	2.502	12.20	0.00	9.5	90.5	0.0	-1.02	2.58	0.63	0.77	—	12675	1590	10	0	5	0	0	logfile
✘	5AJ3	2913	2024-09-27	2015-02-20	3.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	66363	4665	49	1102	1006	118	0	logfile
✔	5ANB	3146	2024-09-23	2015-09-06	4.1	4.11	—	4.1	0.008	1.32	6.0	0.10	23.47	0.01	1.245	5.12	4.33	13.0	83.9	3.1	-4.17	0.41	0.75	—	4.0	0.006	0.94	0.0	0.05	22.63	0.01	2.207	20.57	0.04	16.3	83.0	0.7	-3.80	0.87	0.40	0.71	—	48493	3025	12	1162	0	0	0	logfile
✔	5BK4	9400	2024-09-26	2017-09-12	3.9	4.14	—	4.1	0.008	1.24	0.0	0.06	14.59	0.01	2.234	5.12	1.24	12.2	87.6	0.2	-4.81	0.81	0.79	2.13	4.0	0.003	0.81	1.0	0.04	17.21	0.00	2.408	8.22	2.62	8.9	91.1	0.0	-1.39	0.92	0.81	0.80	1.40	62482	7636	22	120	8	0	0	logfile
✔	5BKF	9403	2024-09-26	2021-03-19	3.6	3.87	—	4.0	0.004	0.54	0.0	0.04	14.14	0.00	2.015	7.17	0.35	6.2	93.8	0.0	-3.64	0.66	0.81	2.57	3.9	0.003	0.69	0.0	0.04	15.86	0.00	2.531	9.28	2.77	3.2	96.8	0.0	-0.24	1.32	0.66	0.83	2.30	13470	1694	10	0	9	0	0	logfile
✔	5BKG	9404	2024-09-26	2021-03-19	3.8	3.93	—	4.0	0.004	0.58	0.0	0.04	12.91	0.00	2.044	8.32	0.21	6.2	93.8	0.0	-3.60	0.68	0.82	2.85	4.0	0.003	0.70	0.0	0.04	15.81	0.00	2.476	8.43	3.71	3.8	96.2	0.0	-0.55	0.62	0.70	0.85	2.08	13509	1689	10	0	9	0	0	logfile
✔	5BKJ	9406	2024-09-27	2021-03-19	3.5	3.68	—	3.7	0.006	0.81	0.0	0.06	15.40	0.00	2.251	5.00	1.09	4.1	95.9	0.0	-3.93	0.69	0.84	2.13	3.7	0.004	0.59	0.0	0.05	16.68	0.00	2.560	6.06	2.07	3.2	96.8	0.0	0.22	1.63	0.66	0.83	1.89	16939	2156	16	0	7	4	0	logfile
✔	5FLU	3222	2024-09-27	2015-10-28	3.8	3.50	—	3.4	0.009	0.93	0.0	0.05	12.31	0.01	2.034	3.04	0.00	8.7	90.1	1.2	-2.36	0.72	0.64	0.95	3.3	0.004	0.72	0.0	0.04	16.19	0.00	2.532	8.67	3.47	5.6	94.4	0.0	-0.57	1.39	0.77	0.79	1.87	15132	2119	13	0	0	0	0	logfile
✔	5FLX	3221	2024-09-30	2015-10-28	3.9	4.33	—	4.3	0.003	0.71	3.0	0.05	21.37	0.00	0.894	15.92	0.19	6.8	92.6	0.6	-2.97	0.42	0.58	0.37	4.2	0.005	0.91	4.0	0.04	22.89	0.01	1.812	21.35	5.25	9.0	90.6	0.5	-1.74	1.52	0.48	0.81	0.67	80592	4810	40	1972	76	0	0	logfile
✔	5FN1	3236	2024-09-26	2015-11-10	3.9	4.00	—	4.7	0.009	1.18	0.0	0.07	12.98	0.00	0.877	53.81	0.00	8.8	88.4	2.8	-3.37	0.24	0.29	0.57	3.9	0.006	1.10	4.0	0.04	17.40	0.01	1.887	17.86	2.20	9.8	89.3	0.9	-0.97	2.04	0.40	0.73	1.02	61308	3906	36	90	0	0	30078	logfile
✔	5FN2	3237	2024-09-25	2015-11-10	4.2	4.23	—	4.2	0.009	1.73	23.0	0.10	17.98	0.01	1.890	19.04	11.69	11.9	84.1	3.9	-1.77	0.48	0.55	—	4.2	0.006	0.97	0.0	0.05	14.35	0.01	2.372	23.80	0.00	9.6	89.5	0.9	-1.20	1.11	0.59	0.74	—	10276	1309	4	0	0	0	0	logfile
✔	5FN3	3238	2024-09-25	2015-11-10	4.1	4.53	—	4.1	0.011	1.81	26.0	0.10	18.64	0.01	1.021	20.42	11.34	10.7	85.3	4.0	-1.54	0.66	0.60	—	4.1	0.004	0.86	0.0	0.05	14.13	0.01	2.384	17.56	0.00	8.7	90.5	0.8	-0.59	2.22	0.70	0.79	—	10291	1318	5	0	0	0	0	logfile
✔	5FN4	3239	2024-09-25	2015-11-10	4.0	4.24	—	4.2	0.010	1.71	17.0	0.10	18.07	0.01	2.131	10.17	10.51	12.0	84.8	3.2	-1.44	0.61	0.55	—	4.1	0.004	0.90	0.0	0.05	17.47	0.01	2.398	18.13	4.20	7.3	92.1	0.6	-0.54	1.71	0.69	0.79	—	9776	1250	5	0	0	0	0	logfile
✔	5FN5	3240	2024-09-25	2015-11-10	4.3	4.62	—	4.3	0.012	1.85	28.0	0.11	18.82	0.01	2.074	13.59	14.00	11.4	84.3	4.3	-1.91	0.65	0.62	—	4.3	0.004	0.86	0.0	0.04	13.91	0.01	2.341	18.06	0.00	8.3	91.0	0.7	-0.89	1.02	0.69	0.79	—	9645	1227	4	0	0	0	0	logfile
✔	5FNA	3241	2024-09-23	2015-11-11	4.8	4.43	—	4.2	0.013	1.51	0.0	0.08	12.32	0.01	2.219	36.54	0.00	6.0	94.0	0.0	-1.83	0.48	0.71	—	4.3	0.004	0.86	0.0	0.04	12.78	0.00	2.556	12.36	0.00	7.2	92.8	0.0	0.97	2.73	0.49	0.77	—	5328	680	8	0	0	0	0	logfile
✔	5FUU	3308	2024-09-28	2016-01-29	4.19	4.30	—	4.2	0.014	1.86	3.0	0.12	17.63	0.02	1.862	17.37	1.20	6.2	92.2	1.7	-2.38	0.69	0.72	—	4.2	0.003	0.87	0.0	0.05	11.85	0.00	2.337	11.80	0.05	6.8	92.7	0.4	-1.12	0.95	0.76	0.82	—	20735	2281	70	0	213	0	0	logfile

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