Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6i26	0328	2024-09-29	2018-10-31	4.3	4.37	—	4.2	0.005	0.89	0.0	0.05	8.22	0.01	0.411	6.12	0.50	6.4	93.3	0.3	-6.25	0.75	0.60	—	4.2	0.004	0.72	0.0	0.04	10.69	0.00	2.455	6.37	0.00	7.4	92.6	0.0	-0.27	0.97	0.83	0.77	—	22765	3366	2	0	221	0	0	logfile
✔	6i2i	0331	2024-09-24	2018-11-01	3.6	3.72	—	3.7	0.009	1.17	0.0	0.06	16.64	0.01	2.019	7.46	0.28	7.1	92.9	0.0	-5.22	0.74	0.74	2.16	3.8	0.004	0.73	0.0	0.05	15.99	0.00	1.878	12.38	3.59	3.5	96.5	0.0	-1.63	0.83	0.76	0.75	1.35	6830	856	4	0	5	0	0	logfile
✔	6i2N	0333	2024-09-28	2018-11-01	3.3	3.45	3.33	3.4	0.007	0.97	0.0	0.05	11.93	0.01	2.323	2.82	0.00	6.0	94.0	0.0	-3.81	0.75	0.79	2.55	3.4	0.003	0.60	0.0	0.04	15.29	0.00	2.369	6.75	1.86	4.2	95.8	0.0	0.77	2.27	0.77	0.84	1.71	18970	2352	14	21	0	0	0	logfile
✔	6N3C	0334	2024-09-23	2018-11-14	3.3	3.53	—	3.5	0.009	1.31	0.0	0.07	14.00	0.00	2.387	18.47	0.00	11.5	88.5	0.0	-5.01	0.52	0.83	4.06	3.5	0.003	0.68	0.0	0.04	15.83	0.00	2.526	9.42	5.79	7.3	92.7	0.0	-3.61	1.15	0.53	0.84	4.09	4260	640	20	0	0	0	0	logfile
✔	6N3Q	0336	2024-09-25	2018-11-16	3.68	4.01	—	4.0	0.006	1.03	0.0	0.05	10.91	0.01	2.308	4.48	0.67	3.2	96.8	0.0	-3.32	0.63	0.78	2.20	4.0	0.003	0.73	0.0	0.04	15.27	0.00	2.606	9.51	4.80	3.9	96.1	0.0	1.21	2.70	0.68	0.80	1.54	9931	1290	6	0	0	0	0	logfile
✔	6N4B	0339	2024-09-24	2018-11-18	3.0	3.84	—	3.8	0.011	1.40	4.0	0.09	9.76	0.01	1.855	20.11	0.84	2.7	97.3	0.0	-2.27	0.55	0.81	3.06	3.8	0.003	0.67	0.0	0.04	14.33	0.00	2.414	4.35	1.56	2.6	97.4	0.0	-0.20	0.65	0.54	0.81	2.73	8453	1121	6	0	3	0	0	logfile
✔	6N4Q	0341	2024-09-27	2018-11-20	3.6	4.01	3.86	4.0	0.008	1.03	0.0	0.06	10.17	0.01	2.288	3.98	0.11	7.9	92.1	0.0	-3.41	0.57	0.73	1.48	4.0	0.004	0.76	2.0	0.04	14.91	0.00	2.264	7.95	2.77	6.0	94.0	0.0	-0.54	0.79	0.57	0.74	1.23	16358	2052	12	0	0	0	0	logfile
✔	6N4R	0342	2024-09-27	2018-11-20	4.2	4.09	4.16	4.1	0.008	1.07	0.0	0.06	10.26	0.01	2.030	4.60	0.23	6.8	93.2	0.0	-3.27	0.66	0.76	—	4.1	0.003	0.71	0.0	0.04	12.55	0.00	2.499	8.80	0.00	6.0	94.0	0.0	-0.62	0.82	0.64	0.76	—	15444	1942	12	0	0	0	0	logfile
✔	6N51	0345	2024-09-26	2018-11-20	4.0	4.15	—	4.0	0.006	0.86	0.0	0.05	9.75	0.01	2.274	5.73	0.00	6.8	93.2	0.0	-3.65	0.71	0.81	—	4.0	0.003	0.74	0.0	0.04	13.76	0.00	2.436	9.37	1.96	4.3	95.7	0.0	-0.56	1.42	0.72	0.82	—	14087	1830	6	0	6	0	0	logfile
✔	6N52	0346	2024-09-25	2018-11-20	4.0	4.42	—	3.9	0.004	0.70	0.0	0.05	8.65	0.01	2.328	4.22	0.00	4.1	95.9	0.0	-4.16	0.72	0.78	—	3.9	0.003	0.67	0.0	0.04	11.54	0.00	2.622	7.06	0.59	5.1	94.9	0.0	-0.47	1.60	0.73	0.81	—	11108	1548	4	0	4	0	0	logfile
✔	6N7H	0356	2024-09-28	2018-11-27	3.6	3.75	—	3.7	0.010	1.32	0.0	0.07	14.94	0.01	2.008	8.78	1.35	12.3	87.1	0.6	-4.46	0.64	0.76	2.32	3.7	0.003	0.80	0.0	0.04	15.71	0.01	2.039	9.77	3.09	9.7	90.3	0.0	-0.39	1.44	0.66	0.78	1.86	17242	2153	8	0	23	0	0	logfile
✔	6N7i	0357	2024-09-25	2018-11-27	3.2	3.34	—	3.3	0.005	0.91	0.0	0.06	14.82	0.02	2.157	2.64	0.53	3.9	96.1	0.0	-3.45	0.69	0.75	2.35	3.3	0.003	0.65	0.0	0.04	17.41	0.00	1.950	5.97	3.00	3.8	96.2	0.0	-0.28	1.30	0.73	0.81	2.14	10833	1350	12	15	8	1	0	logfile
✔	6N7N	0359	2024-09-26	2018-11-27	3.5	3.55	—	3.5	0.006	0.99	0.0	0.06	14.77	0.00	1.975	4.24	0.74	5.5	94.5	0.0	-3.49	0.67	0.66	1.98	3.5	0.003	0.64	0.0	0.04	16.81	0.00	1.886	9.11	1.92	5.2	94.8	0.0	-1.13	1.68	0.69	0.70	1.59	12854	1608	12	15	10	0	0	logfile
✔	6N7S	0362	2024-09-26	2018-11-28	4.6	4.47	—	4.4	0.008	1.20	0.0	0.07	14.87	0.01	1.812	8.33	1.04	12.5	87.5	0.0	-5.07	0.69	0.54	—	4.3	0.003	0.74	0.0	0.04	14.78	0.00	1.917	11.14	0.00	5.9	94.1	0.0	-2.17	1.91	0.72	0.59	—	12783	1607	11	13	8	0	0	logfile
✔	6N7T	0363	2024-09-26	2018-11-28	3.9	4.01	—	3.9	0.006	0.95	0.0	0.06	15.07	0.00	1.883	3.57	0.81	5.6	94.3	0.1	-3.82	0.76	0.72	1.04	3.9	0.002	0.62	0.0	0.04	16.87	0.00	1.943	7.03	1.40	3.5	96.5	0.0	-0.44	0.78	0.77	0.74	0.81	12890	1610	12	16	10	0	0	logfile
✔	6N7V	0364	2024-09-26	2018-11-28	3.8	4.02	—	3.8	0.005	0.89	0.0	0.05	14.42	0.00	2.119	3.58	0.15	3.8	96.2	0.0	-3.41	0.76	0.74	1.21	3.8	0.003	0.67	0.0	0.04	16.53	0.00	1.902	7.75	2.08	3.8	96.2	0.0	-0.42	0.91	0.78	0.76	0.84	12861	1606	12	16	10	0	0	logfile
✘	6N7W	0365	2024-09-24	2018-11-28	4.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7837	808	5	70	2	0	0	logfile
✘	6N9U	0379	2024-09-25	2018-12-04	3.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8822	1063	7	18	4	0	0	logfile
✘	6N9V	0380	2024-09-29	2018-12-04	4.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21526	2651	15	33	14	0	0	logfile
✘	6N9W	0381	2024-09-28	2018-12-04	4.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19576	2410	15	30	12	0	0	logfile

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