Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6SFX	10162	2024-09-28	2019-08-02	4.0	3.90	3.75	3.9	0.012	1.02	1.0	0.06	16.15	0.01	0.560	24.26	0.14	7.7	92.0	0.3	-4.75	0.73	0.74	—	3.8	0.004	0.90	0.0	0.05	18.28	0.00	2.464	19.92	4.11	4.8	95.2	0.0	-1.23	1.48	0.74	0.76	—	20196	2602	14	0	0	0	0	logfile
✔	6TAT	10427	2024-09-24	2019-10-30	3.7	2.79	—	2.9	0.005	0.91	0.0	0.05	15.56	0.01	0.562	5.86	0.68	6.8	93.2	0.0	-4.23	0.61	0.78	2.00	2.9	0.003	0.60	0.0	0.04	18.16	0.01	2.548	3.56	1.76	5.8	94.2	0.0	0.42	0.57	0.61	0.78	1.26	6790	820	5	0	0	0	0	logfile
✔	6RiB	4887	2024-09-27	2019-04-23	4.2	3.32	—	4.0	0.008	1.12	0.0	0.06	18.48	0.00	0.563	15.47	9.09	10.1	89.9	0.0	-5.68	0.73	0.66	—	3.9	0.009	1.10	0.0	0.06	14.45	0.01	2.446	26.95	0.00	22.7	77.3	0.0	-6.12	1.55	0.77	0.74	—	16368	2222	22	0	0	0	0	logfile
✔	8C5R	16441	2024-09-30	2023-01-10	3.7	3.73	3.75	3.7	0.003	0.59	0.0	0.04	8.09	0.00	0.567	18.93	0.00	3.1	96.6	0.3	-3.20	0.43	0.38	0.84	3.7	0.004	0.69	0.0	0.05	13.68	0.00	2.379	10.83	1.90	5.8	94.2	0.0	-1.22	1.22	0.61	0.73	1.74	24969	3178	3	0	0	0	0	logfile
✔	8SEZ	40434	2024-09-29	2023-04-10	3.54	3.68	3.48	3.6	0.003	0.57	0.0	0.04	12.88	0.01	0.570	14.92	0.27	2.9	96.9	0.2	1.95	0.53	0.75	1.99	3.6	0.003	0.61	0.0	0.04	15.98	0.01	2.587	7.25	1.65	2.2	97.6	0.2	1.91	0.57	0.57	0.78	1.90	20580	2508	12	4	4	0	0	logfile
✔	8SPS	40683	2024-09-27	2023-05-03	3.0	3.64	3.06	3.4	0.008	0.88	3.0	0.05	27.01	0.01	0.574	10.67	0.53	4.6	95.3	0.1	-0.87	0.84	0.82	2.70	3.4	0.005	0.71	0.0	0.04	26.96	0.00	2.444	9.48	2.67	4.6	95.4	0.0	1.33	0.69	0.85	0.86	2.51	16515	1334	14	294	0	0	0	logfile
✔	5LKi	4068	2024-09-25	2016-07-22	3.46	3.72	—	3.5	0.013	1.24	5.0	0.06	10.71	0.01	0.579	39.51	0.18	7.7	91.7	0.6	-4.39	0.65	0.79	2.37	3.5	0.004	0.81	0.0	0.04	15.26	0.00	2.483	12.15	2.57	6.9	92.8	0.3	0.26	0.81	0.63	0.80	1.59	55415	7135	5	0	0	0	0	logfile
✔	6UZ0	20949	2024-09-25	2019-11-14	3.24	3.60	—	3.6	0.022	1.38	5.0	0.18	20.23	0.01	0.584	27.88	2.73	7.5	91.5	1.0	-2.63	0.48	0.76	1.87	3.6	0.003	0.73	0.0	0.04	17.76	0.00	2.342	11.19	3.77	6.6	93.3	0.1	0.07	0.64	0.45	0.75	1.30	9557	1138	5	0	26	0	0	logfile
✔	5o4U	3746	2024-09-30	2017-05-31	4.2	4.27	4.23	4.3	0.007	1.26	2.0	0.08	11.28	0.01	0.586	15.82	1.75	17.3	82.7	0.0	-4.67	0.39	0.70	—	4.2	0.004	0.83	0.0	0.06	12.66	0.01	2.407	15.62	0.00	16.3	83.7	0.0	-3.19	0.70	0.45	0.75	—	24528	3312	16	0	0	0	0	logfile
✔	7PBX	13308	2024-09-26	2021-08-02	3.43	3.70	3.43	3.1	0.032	2.53	206.0	0.21	19.43	0.02	0.597	32.75	11.71	3.1	95.3	1.6	1.29	0.69	0.65	1.83	3.2	0.004	0.80	0.0	0.04	17.23	0.00	1.892	11.91	1.51	4.5	95.4	0.1	1.17	1.42	0.91	0.87	2.16	59472	8015	35	0	28	0	0	logfile
✔	7WCo	32426	2024-09-24	2021-12-20	3.8	3.89	—	3.9	0.008	1.13	0.0	0.06	11.02	0.01	0.599	4.59	0.53	14.2	85.8	0.0	-5.43	0.56	0.85	2.78	3.9	0.003	0.71	0.0	0.05	15.30	0.01	2.540	7.79	4.23	9.0	91.0	0.0	-2.72	1.53	0.56	0.85	2.65	8950	1195	15	0	0	0	0	logfile
✔	5G05	3388	2024-09-26	2016-03-16	3.4	3.84	—	3.5	0.016	1.81	55.0	0.10	18.98	0.01	0.612	56.69	17.76	4.5	93.6	1.8	-0.14	0.85	0.76	1.42	3.5	0.005	0.92	3.0	0.04	17.72	0.01	2.107	15.74	3.92	4.6	94.9	0.5	0.72	1.69	0.89	0.85	1.27	63181	8027	21	0	3	0	0	logfile
✔	8EJL	28186	2024-09-29	2022-09-17	3.9	4.30	3.90	4.1	0.005	0.54	0.0	0.04	11.63	0.00	0.636	9.14	3.04	2.2	97.8	0.0	1.75	0.68	0.85	1.79	4.1	0.004	0.81	2.0	0.04	14.75	0.01	1.773	9.91	2.90	1.8	98.2	0.0	2.19	1.22	0.68	0.85	1.22	22155	3095	30	0	0	0	0	logfile
✔	7PBJ	13293	2024-09-26	2021-08-02	3.4	3.54	3.40	3.2	0.018	2.20	140.0	0.13	19.50	0.01	0.650	29.74	11.71	2.5	96.9	0.6	1.69	0.71	0.67	2.07	3.2	0.003	0.70	0.0	0.04	17.48	0.00	1.943	11.03	1.35	3.2	96.7	0.1	1.42	3.42	0.89	0.85	1.73	59486	8015	42	0	28	14	0	logfile
✔	6N1H	8902	2024-09-25	2018-11-08	3.17	3.22	—	3.2	0.006	1.13	0.0	0.06	12.23	0.01	0.657	32.07	3.97	7.4	92.6	0.0	-7.22	0.39	0.46	0.05	3.2	0.004	1.19	1.0	0.05	17.32	0.00	2.040	9.58	1.10	4.8	95.2	0.0	0.41	4.74	0.62	0.84	1.96	10991	1328	16	0	0	0	0	logfile
✔	8VJ7	43276	2024-09-30	2024-01-05	4.85	4.92	4.65	4.7	0.007	0.78	1.0	0.04	14.50	0.01	0.673	6.98	0.48	3.5	96.2	0.3	0.54	0.66	0.67	—	4.6	0.003	0.67	0.0	0.04	13.22	0.00	2.352	11.01	0.00	4.0	95.8	0.2	0.48	2.83	0.71	0.82	—	25175	3186	11	0	4	0	0	logfile
✔	5MQ0	3541	2024-09-30	2016-12-19	4.17	4.40	—	4.2	0.010	1.54	21.0	0.11	17.52	0.01	0.679	7.92	2.73	7.7	91.4	0.9	-2.01	0.68	0.56	—	4.1	0.004	0.73	0.0	0.04	17.00	0.00	1.880	15.41	0.00	5.7	94.3	0.1	0.03	2.10	0.74	0.74	—	77441	9673	53	448	99	0	0	logfile
✔	8oHS	16884	2024-09-26	2023-03-21	4.1	4.12	3.94	4.0	0.009	1.09	0.0	0.08	14.89	0.00	0.697	2.69	0.41	4.5	95.5	0.0	-1.04	0.47	0.78	—	4.0	0.004	0.70	0.0	0.04	13.60	0.00	2.181	6.08	0.07	1.9	98.1	0.0	1.11	2.07	0.51	0.87	—	13335	1758	9	0	0	0	0	logfile
✔	6QX7	4662	2024-09-30	2019-03-07	3.8	3.98	—	3.9	0.006	1.16	0.0	0.06	11.55	0.01	0.726	11.76	1.75	14.3	84.1	1.6	-4.94	0.63	0.59	1.19	3.9	0.005	0.92	0.0	0.05	17.21	0.01	2.475	19.99	3.11	15.7	83.9	0.4	-1.88	1.54	0.67	0.60	0.73	25164	3072	12	0	0	0	0	logfile
✘	8iUY	35733	2024-09-27	2023-03-25	2.9	3.19	2.93	3.2	0.010	1.42	0.0	0.07	13.23	0.01	0.727	8.86	1.15	11.6	88.4	0.0	-3.89	0.60	0.58	1.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16755	2127	12	0	9	0	0	logfile

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