Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oKR	16930	2024-09-23	2023-03-29	2.86	3.36	2.66	3.4	0.007	1.56	0.0	0.09	22.91	0.01	1.489	4.96	0.00	0.0	100.0	0.0	-4.51	0.55	0.67	7.31	3.4	0.190	6.55	65.0	0.43	29.67	0.04	1.662	155.51	10.71	48.3	41.7	10.0	-7.71	2.19	0.63	0.89	1.74	1608	168	24	0	0	0	0	logfile
✔	7V4A	31705	2024-09-23	2021-08-12	3.2	3.19	—	3.3	0.002	0.52	0.0	0.05	14.28	0.00	2.423	8.54	0.00	7.9	92.1	0.0	-5.80	0.42	0.82	3.23	3.2	0.005	0.62	0.0	0.05	16.59	0.00	2.464	4.12	5.45	12.7	87.3	0.0	-4.26	1.59	0.42	0.83	3.47	1653	240	3	0	0	0	0	logfile
✔	8G2V	29682	2024-09-23	2023-02-06	2.715	2.36	2.41	3.0	0.005	0.64	0.0	0.06	16.26	0.00	2.486	8.31	0.00	5.3	94.7	0.0	-3.75	0.45	0.81	7.19	3.0	0.003	0.72	0.0	0.06	17.31	0.00	2.605	15.43	3.89	3.7	96.3	0.0	-3.19	0.67	0.44	0.83	7.56	1660	210	10	0	0	0	0	logfile
✔	7USB	26731	2024-09-23	2022-04-23	3.1	3.28	3.18	3.3	0.013	1.72	0.0	0.11	10.32	0.01	2.590	1.61	1.39	5.5	94.5	0.0	-0.28	0.59	0.76	5.40	3.3	0.003	0.65	0.0	0.05	12.90	0.00	2.508	5.46	2.08	4.0	96.0	0.0	-1.27	1.34	0.59	0.82	5.25	1661	213	3	0	5	0	0	logfile
✔	7QL1	14060	2024-09-23	2021-12-19	3.34	3.41	3.13	3.4	0.011	2.01	0.0	0.10	11.06	0.01	2.654	0.29	0.00	7.5	92.5	0.0	-3.09	0.42	0.83	4.57	3.4	0.003	0.70	0.0	0.05	15.44	0.00	2.553	7.04	1.56	2.8	97.2	0.0	-2.45	1.64	0.36	0.79	4.26	1671	219	3	0	0	0	0	logfile
✔	7M61	23686	2024-09-23	2021-03-25	3.8	3.83	—	4.1	0.005	1.02	0.0	0.08	12.79	0.00	2.218	22.02	0.00	14.3	85.7	0.0	-4.63	0.49	0.73	2.45	3.9	0.003	0.78	0.0	0.05	14.84	0.00	2.325	17.67	2.56	13.3	86.7	0.0	-4.99	1.30	0.49	0.74	2.52	1690	230	20	0	10	0	0	logfile
✔	8BG9	16027	2024-09-23	2022-10-27	3.5	3.74	2.80	4.2	0.008	1.46	0.0	0.09	14.96	0.01	2.484	12.17	12.50	17.1	80.0	2.9	-5.16	0.38	0.79	4.51	4.1	0.004	0.69	0.0	0.05	15.71	0.00	2.604	5.47	5.36	8.6	91.4	0.0	-4.02	0.98	0.38	0.81	5.38	1692	222	6	0	0	0	0	logfile
✔	8PPo	17806	2024-09-23	2023-07-07	2.0	2.30	1.95	2.2	0.008	1.20	1.0	0.07	13.41	0.01	2.625	0.29	0.00	6.7	93.3	0.0	0.71	0.58	0.84	6.50	2.2	0.004	0.55	0.0	0.06	13.87	0.00	2.638	0.29	1.04	0.0	100.0	0.0	1.16	0.37	0.50	0.88	5.79	1696	240	16	0	0	0	0	logfile
✔	7QKZ	14058	2024-09-23	2021-12-19	2.65	2.79	2.28	3.2	0.013	2.86	9.0	0.34	18.75	0.02	2.498	0.59	0.00	9.9	90.1	0.0	-1.61	0.34	0.61	7.02	2.7	0.024	4.11	1.0	0.38	19.43	0.01	2.461	9.46	2.02	1.2	98.8	0.0	-1.87	5.43	0.33	0.63	7.02	1701	99	9	0	0	0	891	logfile
✘	8SL0	40570	2024-09-23	2023-04-20	3.3	4.17	3.09	3.8	0.003	0.62	0.0	0.05	16.00	0.00	2.201	7.96	0.00	8.4	91.2	0.4	-1.67	0.42	0.83	1.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1737	228	1	0	0	0	0	logfile
✔	8iKB	35508	2024-09-23	2023-02-28	3.71	3.37	3.27	3.6	0.009	4.38	45.0	0.34	11.37	0.00	1.899	43.20	0.00	2.9	97.1	0.0	-5.58	0.28	0.73	2.50	3.6	0.049	3.13	0.0	0.15	19.38	0.01	2.042	87.04	21.43	52.1	44.3	3.6	-7.77	1.61	0.33	0.85	3.58	1764	252	28	0	0	0	0	logfile
✔	8ACC	15346	2024-09-23	2022-07-05	2.9	3.30	2.80	3.3	0.002	0.70	0.0	0.05	13.62	0.00	2.200	6.25	0.00	11.4	86.5	2.2	-2.46	0.20	0.81	4.38	3.3	0.005	0.70	0.0	0.05	17.26	0.00	2.479	6.55	3.95	12.7	86.5	0.9	-1.75	0.60	0.20	0.84	3.72	1779	231	2	5	0	0	0	logfile
✔	7F29	31428	2024-09-23	2021-06-10	3.1	3.08	—	3.2	0.014	1.07	0.0	0.06	14.68	0.00	2.305	11.88	0.00	14.3	85.7	0.0	-3.96	0.42	0.83	5.02	3.2	0.002	0.54	0.0	0.05	14.37	0.00	2.646	1.70	0.00	9.5	90.5	0.0	-1.94	1.56	0.41	0.83	5.57	1794	222	18	0	18	0	0	logfile
✔	6VW2	21410	2024-09-23	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.005	0.90	0.0	0.05	15.25	0.00	2.507	12.79	4.76	15.9	84.1	0.0	-5.27	0.43	0.39	0.71	1.38	1800	240	10	0	0	0	0	logfile
✔	8ACB	15345	2024-09-23	2022-07-05	2.6	2.88	1.65	2.9	0.004	0.71	0.0	0.08	15.24	0.00	2.257	7.47	0.00	7.8	92.2	0.0	-0.81	0.21	0.81	4.10	2.9	0.003	0.59	0.0	0.04	17.75	0.00	2.583	4.88	1.14	8.7	91.3	0.0	-0.52	1.22	0.20	0.84	3.54	1815	220	2	5	0	0	0	logfile
✔	8AZ1	15729	2024-09-23	2022-09-05	3.1	3.21	3.04	3.5	0.004	0.58	0.0	0.04	10.90	0.00	2.374	8.00	0.00	0.0	100.0	0.0	-1.57	0.49	0.85	5.69	3.5	0.004	0.52	0.0	0.05	12.66	0.00	1.827	2.57	0.00	0.0	100.0	0.0	-2.20	0.43	0.45	0.83	5.69	1830	250	20	0	10	0	0	logfile
✔	7M64	23688	2024-09-23	2021-03-25	4.0	4.02	—	4.3	0.008	1.15	0.0	0.07	10.07	0.00	2.451	19.77	0.00	8.7	91.3	0.0	-3.84	0.52	0.75	—	4.3	0.004	0.92	0.0	0.04	12.06	0.00	2.436	6.78	0.95	4.3	95.7	0.0	-3.82	1.15	0.51	0.74	—	1850	250	20	0	10	0	0	logfile
✔	8SPA	40677	2024-09-23	2023-05-02	3.0	3.73	2.75	3.7	0.006	0.75	0.0	0.04	10.82	0.00	2.614	9.26	0.00	4.3	95.7	0.0	-3.14	0.49	0.82	5.78	4.1	0.004	0.70	0.0	0.04	15.19	0.00	2.591	8.70	4.76	5.1	94.9	0.0	-2.86	1.82	0.51	0.86	4.66	1870	245	5	0	0	0	0	logfile
✔	8JMT	36426	2024-09-23	2023-06-05	3.3	3.55	3.41	3.7	0.003	0.74	0.0	0.04	14.38	0.00	2.204	8.56	0.00	3.5	96.5	0.0	-0.01	0.35	0.59	1.38	3.7	0.004	0.60	0.0	0.04	16.68	0.00	2.634	9.60	2.46	3.5	96.5	0.0	1.69	1.17	0.33	0.61	0.53	1894	234	1	0	0	0	0	logfile
✔	7BX7	30235	2024-09-23	2020-04-17	2.8	2.94	—	2.9	0.009	0.84	0.0	0.04	12.96	0.00	2.228	15.34	0.00	9.3	90.7	0.0	-5.83	0.40	0.79	6.36	2.9	0.004	0.56	0.0	0.04	14.00	0.00	2.482	3.47	1.15	6.2	93.8	0.0	-5.27	0.55	0.40	0.78	5.99	1896	270	6	0	0	0	0	logfile

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