Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UPY	42457	2024-09-23	2023-10-23	2.8	3.43	3.00	2.9	0.012	1.65	0.0	0.12	28.73	0.01	1.040	88.62	0.00	0.0	0.0	0.0	—	0.18	0.52	—	2.9	0.006	0.78	0.0	0.04	27.49	0.01	2.036	25.14	0.00	0.0	0.0	0.0	—	1.07	0.22	0.75	—	1532	0	1	72	0	0	0	logfile
✔	7B54	12018	2024-09-26	2020-12-03	3.1	3.96	—	3.6	0.005	0.77	0.0	0.04	14.53	0.00	2.081	15.09	0.19	12.5	87.1	0.4	-1.25	0.82	0.83	1.99	3.6	0.003	0.67	0.0	0.04	15.89	0.00	2.372	9.50	1.02	11.1	88.5	0.4	-0.67	0.35	0.81	0.81	1.61	14148	1732	1	0	0	0	0	logfile
✔	7NNH	12477	2024-09-23	2021-02-24	4.0	5.15	—	4.2	0.004	1.28	0.0	0.05	15.82	0.01	2.066	35.16	0.34	23.0	76.5	0.5	-3.61	0.74	0.80	—	4.3	0.004	1.08	0.0	0.05	16.97	0.01	2.495	21.50	2.55	20.5	79.4	0.2	-2.77	1.12	0.74	0.79	—	5299	637	1	0	0	0	0	logfile
✔	7UVK	26812	2024-09-25	2022-05-02	3.28	3.22	3.00	3.3	0.005	0.74	0.0	0.05	13.60	0.00	2.168	11.01	0.00	9.0	91.0	0.0	-3.16	0.57	0.78	2.35	3.2	0.003	0.67	0.0	0.04	16.07	0.00	2.533	9.61	3.75	8.6	91.4	0.0	-2.24	0.71	0.70	0.87	2.87	10350	1295	1	0	0	0	0	logfile
✔	7URi	26713	2024-09-23	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	30.06	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.007	1.37	0.0	0.06	28.69	0.01	2.168	19.15	0.00	0.0	0.0	0.0	—	2.07	0.08	0.37	—	1905	0	1	90	0	0	0	logfile
✔	7XPZ	33386	2024-09-23	2022-05-06	3.4	3.31	3.34	3.6	0.005	0.73	0.0	0.05	12.26	0.01	2.311	6.57	0.58	5.5	94.5	0.0	-6.77	0.49	0.79	3.43	3.6	0.003	0.66	0.0	0.04	14.17	0.00	2.571	5.96	2.31	4.8	95.2	0.0	-0.96	1.15	0.45	0.77	2.31	3227	402	1	0	0	0	0	logfile
✔	7URM	26714	2024-09-23	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	28.63	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.15	0.0	0.05	27.73	0.01	2.031	24.03	0.00	0.0	0.0	0.0	—	1.64	0.15	0.52	—	1905	0	1	90	0	0	0	logfile
✔	8F7J	28905	2024-09-23	2022-11-18	4.32	4.45	4.63	8.9	0.005	0.92	0.0	0.05	15.44	0.01	2.282	15.12	0.26	5.7	94.3	0.0	-3.18	0.38	0.32	—	4.3	0.005	0.92	0.0	0.05	14.34	0.01	2.486	27.01	0.00	11.1	88.9	0.0	-3.32	2.96	0.45	0.47	—	3321	407	1	0	0	0	0	logfile
✔	8H8X	34551	2024-09-26	2022-10-24	3.92	4.03	3.85	3.9	0.011	0.89	0.0	0.05	9.89	0.01	2.101	4.03	0.00	8.2	91.8	0.0	-3.57	0.79	0.76	2.31	3.9	0.003	0.59	0.0	0.04	13.07	0.00	2.273	4.85	0.53	5.9	94.1	0.0	-0.27	1.96	0.79	0.77	1.76	13418	850	1	0	0	0	6667	logfile
✔	8FDG	29011	2024-09-26	2022-12-03	3.2	3.62	—	3.5	0.003	0.68	0.0	0.05	14.00	0.01	2.166	10.24	0.00	11.9	88.1	0.0	-2.81	0.72	0.77	2.13	3.5	0.003	0.68	0.0	0.05	16.19	0.00	2.494	7.23	2.60	11.2	88.8	0.1	-2.71	0.45	0.72	0.78	1.81	12163	1505	1	0	0	0	0	logfile
✔	8DWi	27755	2024-09-23	2022-08-01	3.4	4.06	3.58	4.1	0.003	0.63	0.0	0.04	13.02	0.01	2.258	7.44	0.00	5.0	95.0	0.0	0.29	0.28	0.33	-0.40	4.0	0.003	0.75	0.0	0.04	16.60	0.01	2.552	10.92	1.91	5.5	94.5	0.0	-0.61	1.64	0.47	0.71	2.20	3192	424	1	0	0	0	0	logfile
✔	7SAM	24952	2024-09-23	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	23.50	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.89	0.0	0.04	28.04	0.01	1.982	71.15	0.00	0.0	0.0	0.0	—	5.48	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	8E2G	27835	2024-09-24	2022-08-15	2.99	3.17	3.03	3.1	0.003	0.60	0.0	0.04	15.68	0.00	1.928	12.10	2.42	6.4	93.6	0.0	-1.77	0.46	0.74	2.37	3.1	0.003	0.61	0.0	0.04	15.93	0.01	2.328	10.37	1.54	8.5	91.5	0.0	-1.65	1.01	0.47	0.74	2.26	8110	523	1	0	0	0	4078	logfile
✔	7Wo9	32643	2024-09-26	2022-01-20	2.81	3.01	—	3.0	0.002	0.50	0.0	0.04	13.97	0.00	2.227	5.86	0.00	4.2	95.8	0.0	1.49	0.70	0.78	2.04	3.0	0.003	0.53	0.0	0.04	15.82	0.00	2.433	4.85	0.74	4.7	95.3	0.0	1.89	0.74	0.72	0.80	1.97	12743	1581	1	0	0	0	0	logfile
✔	8Q3F	18126	2024-09-23	2023-08-04	3.77	4.64	3.79	4.2	0.005	1.12	0.0	0.07	15.05	0.01	2.339	3.11	0.00	3.1	96.9	0.0	-5.05	0.90	0.81	0.79	4.2	0.002	0.56	0.0	0.04	15.76	0.00	2.640	3.89	0.99	1.6	98.4	0.0	1.54	0.93	0.90	0.81	0.79	4599	578	1	0	0	0	0	logfile
✔	8E2F	27834	2024-09-26	2022-08-15	2.47	2.75	2.45	2.7	0.003	0.62	0.0	0.04	16.35	0.00	2.040	6.66	1.58	3.0	97.0	0.0	1.05	0.58	0.82	4.21	2.7	0.004	0.58	0.0	0.04	16.76	0.00	2.131	5.36	2.16	2.8	97.2	0.0	1.42	0.31	0.61	0.83	3.79	12305	771	1	0	0	0	6207	logfile
✘	8SXA	40829	2024-09-28	2023-05-20	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18596	1153	1	0	0	0	9418	logfile
✔	8SiB	40505	2024-09-23	2023-04-14	2.62	3.44	2.68	3.3	0.007	1.30	0.0	0.06	11.70	0.01	2.265	4.20	0.78	12.9	85.8	1.3	-5.28	0.73	0.84	3.54	3.3	0.003	0.90	0.0	0.05	15.76	0.00	2.459	9.52	2.33	13.1	86.2	0.7	-1.44	2.03	0.71	0.83	2.66	3544	454	1	0	0	0	0	logfile
✔	8WUA	37852	2024-09-23	2023-10-20	3.6	4.37	3.76	4.3	0.004	0.75	0.0	0.04	15.35	0.01	2.105	8.78	0.49	5.8	94.2	0.0	0.31	0.49	0.58	0.41	4.3	0.003	0.74	0.0	0.04	16.95	0.00	2.577	8.87	2.96	6.1	93.9	0.0	0.48	1.82	0.54	0.69	1.15	5494	675	1	0	0	0	0	logfile
✔	8EHX	28154	2024-09-23	2022-09-14	3.6	3.90	3.67	3.9	0.005	0.80	0.0	0.05	17.02	0.01	2.214	13.59	0.00	8.5	91.3	0.2	0.14	0.58	0.79	0.78	3.9	0.003	0.70	0.0	0.04	17.71	0.00	2.601	8.68	3.74	6.6	93.3	0.2	1.21	1.53	0.56	0.78	1.01	5153	631	1	0	0	0	0	logfile

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