Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TDT	25838	2024-09-27	2022-01-03	4.0	4.13	—	4.0	0.002	0.57	0.0	0.04	13.40	0.00	1.908	10.09	0.00	8.2	91.7	0.1	-0.53	0.63	0.69	—	4.0	0.003	0.86	0.0	0.05	16.24	0.00	2.472	13.16	2.12	9.0	91.0	0.0	-1.25	1.34	0.65	0.73	—	14444	1818	1	0	0	0	0	logfile
✔	6S8E	10119	2024-09-26	2019-07-09	3.1	4.08	3.34	3.7	0.006	0.75	0.0	0.05	15.64	0.00	2.055	19.34	0.16	14.8	84.9	0.2	-4.68	0.79	0.77	1.91	3.8	0.006	0.95	2.0	0.05	17.48	0.00	2.015	20.35	3.68	11.7	88.3	0.0	-2.76	1.62	0.75	0.80	1.46	62224	7502	36	91	1	0	0	logfile
✔	6RDQ	4827	2024-09-25	2019-04-12	4.0	3.99	—	3.9	0.007	0.94	0.0	0.05	15.03	0.01	1.908	6.99	0.44	5.2	94.6	0.2	-4.22	0.72	0.79	—	3.9	0.004	0.72	0.0	0.04	16.63	0.00	1.850	11.37	2.47	5.0	94.9	0.1	-0.37	1.22	0.72	0.81	—	53748	7103	37	0	11	0	0	logfile
✘	6RD9	4810	2024-09-25	2019-04-12	3.0	3.00	—	3.1	0.014	1.11	0.0	0.07	14.33	0.01	1.876	6.07	0.69	4.7	95.0	0.2	-5.13	0.71	0.84	3.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53776	7103	41	0	11	28	0	logfile
✔	7UKG	26580	2024-09-24	2022-04-01	2.24	2.56	2.27	2.5	0.006	0.58	0.0	0.04	13.16	0.00	2.208	6.08	0.00	1.8	98.2	0.0	2.95	0.68	0.88	4.70	2.5	0.003	0.49	0.0	0.04	14.15	0.00	2.615	5.00	0.11	1.4	98.6	0.0	3.91	0.31	0.69	0.89	4.29	8652	1128	10	0	4	0	0	logfile
✔	8Q3F	18126	2024-09-23	2023-08-04	3.77	4.64	3.79	4.2	0.005	1.12	0.0	0.07	15.05	0.01	2.339	3.11	0.00	3.1	96.9	0.0	-5.05	0.90	0.81	0.79	4.2	0.002	0.56	0.0	0.04	15.76	0.00	2.640	3.89	0.99	1.6	98.4	0.0	1.54	0.93	0.90	0.81	0.79	4599	578	1	0	0	0	0	logfile
✔	8SQU	40713	2024-09-24	2023-05-04	3.28	4.37	3.34	4.0	0.003	0.63	0.0	0.05	18.10	0.00	1.967	11.66	0.00	6.3	93.7	0.0	-0.59	0.75	0.62	1.04	4.0	0.003	0.73	0.0	0.04	19.90	0.00	2.039	12.72	1.33	5.1	94.9	0.0	-0.30	2.15	0.78	0.69	1.08	7761	841	5	41	1	0	0	logfile
✔	6WZ9	21971	2024-09-25	2020-05-13	2.8	2.45	—	3.0	0.006	0.74	0.0	0.04	28.90	0.01	2.015	6.87	2.27	1.7	98.3	0.0	0.07	0.73	0.70	2.55	3.0	0.004	0.65	0.0	0.04	29.05	0.01	2.437	9.77	4.55	2.5	97.5	0.0	1.92	0.50	0.74	0.73	2.41	11926	738	10	296	0	0	0	logfile
✔	6RDT	4830	2024-09-25	2019-04-12	3.4	3.29	—	3.4	0.011	1.02	1.0	0.06	15.18	0.01	2.058	6.06	0.60	5.7	94.0	0.3	-4.05	0.68	0.83	2.56	3.4	0.004	0.65	0.0	0.04	16.35	0.00	1.860	8.28	2.45	4.3	95.5	0.2	0.27	2.40	0.70	0.85	1.98	53748	7103	37	0	11	0	0	logfile
✔	8H3D	34464	2024-09-30	2022-10-08	3.27	3.75	3.39	3.6	0.004	0.59	3.0	0.05	16.86	0.00	2.173	3.86	0.26	6.4	93.6	0.0	-3.11	0.77	0.85	1.54	3.6	0.005	0.64	0.0	0.05	17.16	0.00	2.517	3.39	3.92	7.9	92.1	0.0	-2.95	0.30	0.78	0.87	1.60	24448	3103	6	0	13	0	0	logfile
✘	6RD8	4809	2024-09-27	2019-04-12	3.08	3.22	3.08	3.2	0.008	0.90	0.0	0.05	14.78	0.01	1.790	6.40	0.45	2.3	97.5	0.1	-2.59	0.58	0.86	3.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17312	2309	26	0	1	18	0	logfile
✔	6RET	4856	2024-09-25	2019-04-12	4.3	4.36	4.35	4.3	0.006	0.95	0.0	0.06	15.08	0.01	1.680	8.22	0.41	6.0	93.9	0.1	-5.14	0.59	0.72	—	4.3	0.003	0.71	0.0	0.04	14.38	0.00	1.939	12.48	0.02	4.9	95.0	0.1	-0.85	0.71	0.59	0.75	—	53756	7104	37	0	11	0	0	logfile
✔	6RE9	4846	2024-09-25	2019-04-12	3.9	3.98	3.94	3.9	0.006	0.86	0.0	0.05	14.61	0.01	1.985	5.76	0.21	4.3	95.5	0.2	-4.12	0.61	0.74	1.21	3.9	0.003	0.69	0.0	0.04	16.56	0.00	1.941	11.49	2.81	3.9	96.0	0.1	0.08	1.29	0.63	0.79	0.98	53720	7099	37	0	11	0	0	logfile
✔	8HBW	34645	2024-09-23	2022-10-31	2.57	2.69	2.51	2.7	0.010	1.05	0.0	0.05	16.26	0.01	2.199	7.29	0.00	2.2	97.8	0.0	1.60	0.63	0.87	4.58	2.8	0.004	0.58	0.0	0.04	16.84	0.00	2.528	6.53	1.48	2.0	98.0	0.0	3.03	1.22	0.62	0.88	4.27	3309	414	3	0	4	0	0	logfile
✔	6RDH	4818	2024-09-25	2019-04-12	3.0	3.16	—	3.2	0.010	1.01	1.0	0.06	14.16	0.01	2.025	5.62	0.34	5.0	94.8	0.2	-3.87	0.72	0.85	3.15	3.2	0.005	0.78	3.0	0.04	16.03	0.01	1.888	9.00	1.94	3.8	96.1	0.1	0.46	1.57	0.73	0.87	2.49	53748	7103	37	0	11	0	0	logfile
✔	7TPK	26058	2024-09-23	2022-01-25	3.4	3.41	—	3.4	0.011	1.40	1.0	0.08	9.83	0.01	2.528	2.12	0.00	4.7	95.3	0.0	-0.98	0.60	0.72	4.39	3.4	0.003	0.60	0.0	0.04	14.85	0.00	2.540	2.12	1.44	3.1	96.9	0.0	-0.87	1.23	0.64	0.80	3.09	1484	194	2	0	1	0	0	logfile
✔	6RDZ	4836	2024-09-25	2019-04-12	3.5	3.36	—	3.4	0.009	0.96	1.0	0.06	15.00	0.01	1.846	6.04	0.43	5.4	94.4	0.2	-4.22	0.69	0.82	2.47	3.4	0.003	0.63	0.0	0.04	16.34	0.00	1.926	8.26	2.15	3.9	96.0	0.1	0.00	0.47	0.69	0.82	2.00	53720	7099	37	0	11	0	0	logfile
✔	6XP5	22284	2024-09-29	2020-07-08	4.2	4.73	—	4.3	0.004	0.90	0.0	0.05	14.32	0.00	2.131	14.90	0.27	15.9	83.2	0.9	-5.23	0.79	0.76	—	4.3	0.003	0.81	0.0	0.04	14.41	0.00	2.343	10.12	0.16	14.3	85.3	0.3	-2.53	0.75	0.79	0.76	—	21065	2707	15	0	221	0	0	logfile
✔	7P6A	13223	2024-09-23	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.006	0.74	0.0	0.06	14.08	0.00	2.571	4.76	0.64	4.7	95.3	0.0	-2.53	0.83	0.54	0.90	7.92	4166	540	10	0	0	76	0	logfile
✔	8GV8	34287	2024-09-24	2022-09-14	3.08	3.29	3.09	3.3	0.019	1.93	51.0	0.09	14.99	0.01	1.614	6.04	3.97	5.6	93.7	0.7	-0.32	0.63	0.82	2.59	3.3	0.003	0.59	0.0	0.04	15.36	0.01	2.523	4.01	1.93	2.5	97.5	0.0	1.10	1.25	0.60	0.82	2.34	8161	1027	4	0	2	0	0	logfile

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