Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6X4S	22042	2024-09-23	2020-05-22	3.5	3.84	—	3.9	0.007	0.77	0.0	0.05	15.59	0.00	2.077	11.03	0.97	1.9	98.1	0.0	1.34	0.72	0.75	1.39	3.9	0.003	0.71	0.0	0.04	17.98	0.00	2.284	11.69	4.27	1.5	98.5	0.0	4.29	1.52	0.72	0.76	1.27	5373	706	9	0	1	0	0	logfile
✔	7BZX	30262	2024-09-23	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.9	0.005	1.11	0.0	0.05	8.68	0.00	2.286	14.37	0.00	21.3	78.7	0.0	-4.55	2.97	0.75	0.58	—	5652	1154	2	0	0	0	0	logfile
✔	7VGQ	31975	2024-09-26	2021-09-18	4.0	4.26	—	4.2	0.009	1.27	2.0	0.07	12.16	0.01	2.211	7.11	0.74	13.9	85.9	0.2	-5.44	0.71	0.75	—	4.2	0.003	0.72	0.0	0.04	15.32	0.00	2.391	6.84	3.49	7.7	92.3	0.1	-2.29	0.64	0.69	0.76	—	13156	1661	3	0	2	0	0	logfile
✔	7Z0L	14427	2024-09-26	2022-02-23	4.0	4.43	4.11	4.3	0.005	0.95	0.0	0.06	15.67	0.01	2.223	7.63	0.65	5.5	94.5	0.0	-0.67	0.58	0.49	—	4.4	0.003	0.69	0.0	0.04	15.20	0.00	2.359	9.86	2.84	4.4	95.6	0.0	0.45	0.98	0.59	0.52	—	13752	856	9	0	12	0	6713	logfile
✘	3J9S	6272	2024-09-25	2015-02-19	2.6	3.83	—	3.5	0.020	1.80	0.0	0.12	18.55	0.01	0.216	25.10	6.86	1.3	98.0	0.8	1.97	0.68	0.76	3.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9813	1191	6	0	15	315	0	logfile
✔	7TLY	25990	2024-09-23	2022-01-19	3.0	3.01	2.93	3.0	0.010	1.32	2.0	0.08	12.98	0.00	2.556	1.69	0.00	2.5	97.5	0.0	0.36	0.64	0.76	4.98	3.0	0.003	0.62	0.0	0.04	13.45	0.01	2.551	3.88	3.51	2.3	97.7	0.0	-1.26	1.04	0.68	0.82	4.76	3105	408	4	0	4	0	0	logfile
✔	7SF7	25076	2024-09-24	2021-10-03	2.9	2.36	—	2.2	0.005	0.78	0.0	0.05	12.92	0.00	2.234	6.27	0.56	7.5	92.5	0.0	-1.73	0.75	0.74	2.07	2.1	0.003	0.62	0.0	0.04	15.62	0.00	2.499	5.08	2.68	6.8	93.2	0.0	-1.00	0.50	0.77	0.78	1.49	6776	879	5	0	0	3	0	logfile
✔	7NLL	12465	2024-09-24	2021-02-22	2.89	3.42	—	3.2	0.003	0.55	0.0	0.26	15.47	0.00	2.255	7.02	0.00	0.6	99.4	0.0	1.34	0.80	0.82	3.17	3.1	0.003	0.62	0.0	0.04	15.07	0.00	2.511	6.30	4.02	2.5	97.5	0.0	-0.09	1.21	0.82	0.87	3.45	5056	656	6	0	2	0	0	logfile
✔	7F46	31444	2024-09-24	2021-06-17	4.79	5.15	—	3.3	0.006	0.84	0.0	0.05	13.32	0.01	2.218	12.18	0.00	8.9	91.1	0.0	-2.90	0.77	0.60	—	4.4	0.003	0.74	0.0	0.05	13.13	0.01	2.467	14.19	0.00	6.1	93.9	0.0	-1.59	1.12	0.79	0.64	—	6564	842	6	0	2	0	0	logfile
✔	7RYC	24733	2024-09-24	2021-08-24	2.9	2.34	—	3.0	0.006	0.86	0.0	0.05	13.76	0.00	2.198	5.49	0.38	4.9	95.1	0.0	-2.98	0.80	0.77	2.64	3.0	0.004	0.65	0.0	0.04	15.82	0.00	2.300	2.49	1.75	2.8	97.2	0.0	-0.39	0.44	0.82	0.81	2.52	8277	1125	7	0	2	0	0	logfile
✔	7RR0	24649	2024-09-23	2021-08-08	3.12	3.40	—	3.4	0.004	0.97	0.0	0.06	12.28	0.01	2.327	2.79	0.00	1.4	98.6	0.0	0.12	0.75	0.77	2.73	3.4	0.003	0.76	0.0	0.04	16.08	0.00	2.484	8.22	2.25	2.6	97.4	0.0	0.06	0.67	0.76	0.80	2.73	3297	422	4	0	1	0	0	logfile
✔	7VV4	32137	2024-09-23	2021-11-04	2.97	3.66	—	3.7	0.007	1.20	2.0	0.09	14.73	0.01	1.600	15.98	3.75	4.2	95.8	0.0	-0.53	0.64	0.78	2.05	3.7	0.003	0.72	0.0	0.05	17.10	0.00	2.576	9.23	4.17	2.6	97.0	0.4	2.20	0.54	0.59	0.77	0.88	2181	269	3	0	1	0	0	logfile
✘	8EAo	27792	2024-09-28	2022-08-29	3.2	4.04	3.15	20.0	0.003	0.60	0.0	0.05	14.09	0.00	2.197	10.56	0.10	3.6	96.4	0.0	1.03	0.18	0.04	-0.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	71628	8964	24	0	0	0	0	logfile
✔	7ZYZ	15029	2024-09-23	2022-05-25	2.47	2.56	2.40	2.2	0.007	0.87	0.0	0.05	18.66	0.01	1.973	9.47	5.45	2.8	97.2	0.0	-0.23	0.87	0.87	3.85	2.2	0.003	0.61	0.0	0.04	18.33	0.00	2.122	6.90	2.61	2.6	97.4	0.0	0.94	0.40	0.88	0.88	3.44	4349	541	2	0	2	38	0	logfile
✔	6F36	4176	2024-09-24	2017-11-28	3.7	2.63	—	3.9	0.010	1.13	0.0	0.07	11.06	0.01	2.304	7.63	0.27	5.1	94.9	0.0	-5.92	0.82	0.70	1.42	3.8	0.003	0.73	0.0	0.04	15.27	0.00	2.567	12.07	5.32	3.0	96.9	0.1	-0.09	0.87	0.83	0.73	1.11	7453	1039	12	0	0	0	0	logfile
✘	7C8K	30306	2024-09-24	2020-06-02	3.2	3.18	—	3.1	0.002	0.51	0.0	0.05	13.49	0.00	2.001	4.88	0.00	3.2	96.8	0.0	-1.52	0.82	0.78	2.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4853	596	3	0	6	0	0	logfile
✔	7VVM	32144	2024-09-24	2021-11-06	3.2	2.40	3.19	3.2	0.015	1.76	0.0	0.09	13.51	0.00	2.200	6.43	0.60	5.2	94.8	0.0	-1.17	0.60	0.71	2.55	3.2	0.003	0.56	0.0	0.04	16.21	0.00	2.551	7.58	2.74	3.8	96.2	0.0	0.61	0.56	0.65	0.73	2.32	8507	1133	6	0	0	0	0	logfile
✔	7CTF	30463	2024-09-27	2020-08-18	4.8	4.92	—	4.8	0.009	1.36	0.0	0.06	19.00	0.01	2.264	6.48	8.84	6.9	93.1	0.1	-4.50	0.77	0.73	—	4.7	0.003	0.82	0.0	0.05	14.97	0.00	2.346	15.09	0.06	6.3	93.7	0.0	-1.09	3.94	0.79	0.78	—	14504	1775	7	0	2	0	0	logfile
✘	6UJA	20794	2024-09-24	2019-10-02	3.3	3.49	—	3.4	0.014	1.49	0.0	0.09	11.59	0.01	1.802	0.19	0.14	2.7	97.1	0.2	0.28	0.82	0.82	3.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8224	1128	10	0	23	0	0	logfile
✔	6J6K	0690	2024-09-23	2019-01-15	3.3	3.61	—	3.8	0.005	1.22	0.0	0.06	12.69	0.00	2.357	5.53	1.16	6.8	90.6	2.6	-4.75	0.75	0.81	5.62	3.8	0.005	0.83	0.0	0.04	14.31	0.00	2.574	7.13	3.20	8.5	90.6	0.9	-2.48	0.59	0.69	0.79	4.52	3548	476	4	0	0	0	0	logfile

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