Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8G5V	29756	2024-09-26	2023-02-14	3.0	2.99	4.36	3.8	0.004	0.61	0.0	0.04	12.94	0.01	2.223	7.63	0.00	2.9	97.1	0.0	2.14	0.25	0.24	0.28	3.1	0.003	0.75	0.0	0.04	16.67	0.01	2.467	11.22	1.11	2.3	97.7	0.0	1.37	3.07	0.47	0.78	2.28	13739	1718	12	0	0	0	0	logfile
✔	8iZP	35867	2024-09-25	2023-04-07	3.31	3.72	3.43	3.7	0.015	2.04	19.0	0.13	17.71	0.01	2.316	9.67	15.23	3.7	96.2	0.2	-1.61	0.67	0.82	1.87	3.7	0.003	0.64	0.0	0.04	16.81	0.00	2.463	6.52	4.30	2.1	97.9	0.0	0.78	2.25	0.60	0.80	1.65	9425	1210	1	0	0	0	0	logfile
✔	8G6V	29785	2024-09-26	2023-02-16	3.4	3.24	—	3.3	0.003	0.60	0.0	0.04	16.35	0.01	2.084	5.69	0.85	2.5	97.5	0.0	1.60	0.51	0.89	2.44	3.2	0.003	0.57	0.0	0.04	16.46	0.00	2.393	4.99	2.49	2.8	97.2	0.0	2.72	1.18	0.51	0.89	2.40	13736	1716	12	0	0	0	0	logfile
✔	8KBY	37087	2024-09-23	2023-08-04	3.23	3.45	3.19	3.5	0.003	0.91	0.0	0.05	14.41	0.00	2.288	12.26	0.00	12.2	87.4	0.4	-4.87	0.50	0.47	2.38	3.4	0.005	1.28	1.0	0.05	15.82	0.01	2.428	9.74	6.58	18.9	80.9	0.1	-5.16	1.75	0.57	0.62	2.75	5050	830	1	0	0	0	0	logfile
✔	8JH7	36258	2024-09-24	2023-05-22	3.2	2.35	3.28	2.1	0.003	0.77	0.0	0.05	13.57	0.01	2.240	6.25	0.00	5.0	95.0	0.0	-1.48	0.74	0.73	2.56	2.1	0.004	0.72	0.0	0.04	15.95	0.00	2.390	9.15	2.05	5.2	94.7	0.1	0.05	0.57	0.75	0.76	2.07	7663	988	4	0	0	0	0	logfile
✔	8FoP	29353	2024-09-25	2023-01-03	3.2	3.58	6.51	3.5	0.003	0.56	0.0	0.04	13.33	0.00	2.078	9.63	0.05	7.1	92.3	0.6	-0.82	0.51	0.79	2.41	3.5	0.004	0.62	0.0	0.04	15.71	0.00	2.197	7.21	2.81	8.5	91.1	0.3	-0.89	0.43	0.53	0.83	2.22	55484	7283	30	0	0	0	0	logfile
✔	8V4Q	42975	2024-09-23	2023-11-29	2.71	2.89	2.72	2.9	0.003	0.53	0.0	0.05	13.53	0.00	2.201	1.68	0.48	1.7	98.3	0.0	0.26	0.55	0.85	3.48	2.9	0.002	0.48	0.0	0.04	16.96	0.00	2.492	1.26	2.09	1.6	98.4	0.0	0.72	0.35	0.56	0.88	3.07	5993	761	3	0	0	0	0	logfile
✔	8KE9	37150	2024-09-23	2023-08-11	3.76	4.61	3.81	3.9	0.003	0.70	0.0	0.08	14.47	0.00	1.931	12.94	7.55	5.7	94.1	0.2	-1.09	0.74	0.78	0.99	3.9	0.004	0.72	0.0	0.04	14.35	0.00	2.493	15.83	2.21	5.7	94.1	0.2	-0.52	1.82	0.76	0.86	1.44	4929	654	3	0	0	0	0	logfile
✔	8JLW	36406	2024-09-23	2023-06-03	3.0	3.23	2.87	3.2	0.005	0.69	0.0	0.04	14.61	0.01	2.255	11.03	0.00	9.3	90.7	0.0	-1.71	0.58	0.71	4.14	3.2	0.004	0.71	0.0	0.04	16.81	0.01	2.544	8.87	1.29	7.0	93.0	0.0	-1.42	0.37	0.55	0.72	3.69	2157	280	3	0	0	0	0	logfile
✔	7YP1	33992	2024-09-23	2022-08-02	3.54	3.78	3.54	3.8	0.010	1.05	0.0	0.06	14.05	0.01	2.275	3.74	0.24	9.9	90.1	0.0	-5.19	0.66	0.84	3.95	3.8	0.004	0.60	0.0	0.04	16.02	0.00	2.576	4.94	3.13	5.9	94.1	0.0	-2.48	0.48	0.66	0.84	2.48	3770	490	4	0	0	0	0	logfile
✔	8V8B	43033	2024-09-24	2023-12-05	2.4	2.48	2.49	2.5	0.005	0.87	0.0	0.06	13.66	0.01	2.319	1.00	0.23	2.7	97.3	0.0	-0.78	0.77	0.85	4.46	2.5	0.005	0.78	2.0	0.04	15.89	0.00	1.902	2.58	1.51	1.9	98.1	0.0	1.27	1.64	0.76	0.86	3.41	50700	6188	13	0	0	0	0	logfile
✔	8J8A	36065	2024-09-26	2023-05-01	2.51	3.34	2.59	3.1	0.003	0.50	0.0	0.04	12.92	0.00	2.197	7.41	0.08	2.0	98.0	0.0	1.03	0.81	0.85	3.53	3.1	0.003	0.57	0.0	0.04	14.65	0.00	2.552	6.18	0.91	2.8	97.2	0.0	0.91	1.93	0.81	0.86	3.70	12222	1502	2	0	0	0	0	logfile
✔	8oWE	17235	2024-09-23	2023-04-27	3.75	3.64	3.54	3.8	0.014	2.47	20.0	0.17	22.52	0.03	1.831	11.09	18.33	1.4	98.6	0.0	-2.67	0.41	0.73	5.00	3.7	0.003	0.81	0.0	0.05	18.24	0.00	2.593	13.52	6.33	7.4	92.6	0.0	-3.82	1.48	0.43	0.76	5.27	2940	385	10	0	0	0	0	logfile
✔	8oUF	17191	2024-09-27	2023-04-22	3.1	3.00	3.13	3.1	0.006	0.99	0.0	0.07	17.15	0.01	2.213	1.68	0.14	0.9	99.1	0.0	-0.59	0.64	0.76	4.67	3.1	0.003	0.59	0.0	0.04	18.11	0.00	2.126	5.32	1.83	1.6	98.4	0.0	0.16	1.20	0.75	0.84	3.22	15230	1674	10	86	0	0	0	logfile
✔	8HX1	35071	2024-09-27	2023-01-03	3.29	3.53	3.34	3.5	0.005	0.63	0.0	0.04	13.93	0.00	2.182	3.33	0.00	1.2	98.8	0.0	3.33	0.75	0.83	2.28	3.5	0.006	0.58	0.0	0.04	15.82	0.00	2.506	2.72	1.76	2.3	97.7	0.0	2.73	0.26	0.69	0.83	1.81	14919	1926	12	0	0	0	0	logfile
✔	8GB3	29912	2024-09-23	2023-02-24	3.7	2.58	—	1.8	0.003	0.52	0.0	0.04	12.39	0.00	2.202	15.48	4.31	6.9	93.1	0.0	-0.39	0.66	0.61	0.82	1.7	0.004	0.70	0.0	0.04	14.85	0.00	2.495	16.11	4.66	7.5	92.5	0.0	-0.56	0.47	0.67	0.61	0.90	5537	735	3	0	0	0	0	logfile
✔	8JGB	36229	2024-09-24	2023-05-20	2.84	2.28	2.92	2.0	0.010	1.22	2.0	0.07	15.63	0.01	2.230	7.27	2.89	6.4	93.6	0.0	-2.42	0.83	0.82	3.66	2.0	0.004	0.69	0.0	0.04	16.63	0.00	2.544	4.23	3.67	3.8	96.2	0.0	-0.19	0.53	0.83	0.83	3.65	7796	1062	6	0	0	0	0	logfile
✔	8C5R	16441	2024-09-30	2023-01-10	3.7	3.73	3.75	3.7	0.003	0.59	0.0	0.04	8.09	0.00	0.567	18.93	0.00	3.1	96.6	0.3	-3.20	0.43	0.38	0.84	3.7	0.004	0.69	0.0	0.05	13.68	0.00	2.379	10.83	1.90	5.8	94.2	0.0	-1.22	1.22	0.61	0.73	1.74	24969	3178	3	0	0	0	0	logfile
✔	8G5L	29748	2024-09-26	2023-02-13	3.0	3.41	3.03	3.2	0.009	1.04	0.0	0.07	18.59	0.00	2.075	7.07	2.17	7.8	92.2	0.1	-0.22	0.66	0.55	1.10	3.3	0.004	0.83	0.0	0.05	19.32	0.00	2.346	14.36	5.29	9.0	91.0	0.0	-0.56	1.01	0.71	0.68	1.41	12623	1634	5	39	0	0	0	logfile
✔	8oQi	17111	2024-09-23	2023-04-12	3.1	3.09	2.34	3.3	0.013	2.01	0.0	0.11	18.29	0.01	2.465	9.18	2.63	0.0	100.0	0.0	0.22	0.51	0.84	3.31	3.3	0.003	0.58	0.0	0.05	17.02	0.00	2.641	3.75	4.21	2.2	97.8	0.0	-1.72	1.22	0.52	0.87	4.11	3810	560	10	0	0	0	0	logfile

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