Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6FU8	4319	2024-09-23	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.003	0.76	0.0	0.04	15.90	0.00	2.426	9.53	0.00	8.8	90.0	1.2	-2.74	3.88	0.23	0.62	0.61	1364	82	1	0	0	0	711	logfile
✔	7UiU	26553	2024-09-23	2022-03-29	2.8	3.11	2.72	3.1	0.004	0.62	0.0	0.04	13.60	0.00	2.356	3.35	0.00	4.8	95.2	0.0	-2.09	0.28	0.82	1.99	3.3	0.005	0.99	0.0	0.05	18.07	0.00	2.508	8.38	1.67	6.0	94.0	0.0	-2.59	1.37	0.28	0.89	2.33	607	85	1	0	0	0	0	logfile
✘	7KU5	23034	2024-09-23	2020-11-24	3.76	3.63	—	3.9	0.006	1.29	0.0	0.07	14.85	0.01	2.420	3.63	0.00	12.8	87.2	0.0	-5.41	0.23	0.65	-0.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	750	88	2	0	4	0	0	logfile
✔	6TGN	10499	2024-09-23	2019-11-17	3.9	3.83	—	4.0	0.010	1.73	0.0	0.12	11.93	0.01	2.161	5.17	1.39	4.7	95.3	0.0	-3.57	0.54	0.90	1.73	4.0	0.003	0.95	0.0	0.04	15.58	0.00	2.532	9.59	5.56	2.3	97.7	0.0	0.31	1.02	0.52	0.82	1.22	672	88	1	0	0	0	0	logfile
✔	8A05	15048	2024-09-23	2022-05-26	3.4	3.47	3.11	3.5	0.002	0.43	0.0	0.05	12.67	0.00	2.328	2.02	0.00	2.2	97.8	0.0	0.42	0.37	0.84	2.71	3.5	0.003	0.48	0.0	0.05	14.62	0.00	2.624	2.02	1.20	1.1	98.9	0.0	0.38	0.21	0.36	0.85	2.71	764	91	2	0	5	0	0	logfile
✔	8P34	17383	2024-09-23	2023-05-17	2.61	2.80	2.24	2.8	0.009	1.32	0.0	0.08	11.05	0.01	2.651	0.69	0.00	5.4	94.6	0.0	-1.84	0.29	0.90	7.34	2.8	0.005	0.64	0.0	0.05	13.81	0.00	2.682	0.69	1.23	4.3	95.7	0.0	-1.79	0.21	0.28	0.88	6.57	711	94	1	0	0	0	0	logfile
✔	5M6S	3451	2024-09-23	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.4	0.003	0.63	0.0	0.03	17.89	0.00	2.491	5.65	0.00	6.2	93.8	0.0	2.23	2.29	0.02	0.07	—	1593	98	1	0	0	0	793	logfile
✔	7QKZ	14058	2024-09-23	2021-12-19	2.65	2.79	2.28	3.2	0.013	2.86	9.0	0.34	18.75	0.02	2.498	0.59	0.00	9.9	90.1	0.0	-1.61	0.34	0.61	7.02	2.7	0.024	4.11	1.0	0.38	19.43	0.01	2.461	9.46	2.02	1.2	98.8	0.0	-1.87	5.43	0.33	0.63	7.02	1701	99	9	0	0	0	891	logfile
✔	7X34	32978	2024-09-23	2022-02-27	3.1	5.47	3.73	3.1	0.009	1.17	0.0	0.05	24.84	0.01	2.316	5.71	0.00	3.1	96.9	0.0	-2.86	0.21	0.78	1.18	3.3	0.005	0.81	0.0	0.04	25.40	0.00	2.071	30.52	2.60	4.1	95.9	0.0	-0.30	0.66	0.21	0.78	-0.93	2762	100	2	94	0	0	0	logfile
✔	6QJP	4565	2024-09-23	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.004	0.75	0.0	0.05	13.42	0.00	2.557	10.42	1.96	2.2	97.8	0.0	-3.41	1.62	0.32	0.72	3.47	816	105	3	0	0	0	0	logfile
✔	6QJM	4564	2024-09-23	2019-01-24	3.3	3.49	1.95	3.4	0.010	1.01	0.0	0.07	8.06	0.01	2.408	6.17	0.00	9.1	90.9	0.0	-2.36	0.38	0.76	3.31	3.5	0.002	0.57	0.0	0.05	13.50	0.00	2.547	3.93	1.90	3.0	97.0	0.0	-2.29	1.61	0.33	0.72	3.64	846	111	3	0	0	0	0	logfile
✔	7Uo1	26637	2024-09-27	2022-04-12	3.2	3.31	—	3.3	0.002	4.43	0.0	0.10	31.57	0.00	1.799	11.73	0.00	4.5	92.7	2.7	0.03	0.51	0.54	2.38	3.2	0.004	1.86	0.0	0.24	31.18	0.01	2.029	15.50	4.08	5.5	94.5	0.0	-0.22	1.81	0.57	0.65	1.50	16588	112	4	455	10	0	5894	logfile
✔	7Uo0	26636	2024-09-25	2022-04-12	3.4	4.47	—	3.5	0.003	2.23	0.0	0.11	29.93	0.00	2.117	7.29	2.04	6.4	93.6	0.0	-0.20	0.73	0.34	1.64	3.5	0.004	0.82	0.0	0.04	30.47	0.00	2.164	13.26	1.02	5.5	94.5	0.0	-2.29	4.73	0.83	0.62	1.66	10697	112	4	455	7	0	0	logfile
✔	7Uo5	26640	2024-09-26	2022-04-12	3.1	3.62	3.02	3.0	0.015	2.22	0.0	0.12	31.48	0.06	2.328	2.33	1.02	6.4	92.7	0.9	-2.73	0.80	0.60	3.19	3.0	0.005	0.82	0.0	0.05	30.18	0.01	1.974	20.55	2.04	9.1	90.0	0.9	-3.47	1.98	0.81	0.66	1.42	13979	112	3	373	7	0	5024	logfile
✔	7Uo2	26638	2024-09-24	2022-04-12	3.1	3.75	—	3.0	0.002	0.55	0.0	0.03	26.44	0.00	2.033	10.61	2.04	14.5	83.6	1.8	-3.16	0.85	0.73	1.50	3.0	0.008	1.02	0.0	0.05	27.18	0.01	1.819	28.46	5.10	15.5	84.5	0.0	-3.23	0.75	0.87	0.81	2.13	6735	112	3	271	3	0	0	logfile
✘	6RJU	4906	2024-09-23	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1992	131	1	0	0	0	997	logfile
✔	8TiF	41286	2024-09-23	2023-07-19	3.89	3.95	3.71	4.1	0.005	0.55	0.0	0.04	17.04	0.00	2.317	8.78	1.02	1.6	98.4	0.0	0.15	0.23	0.85	1.30	4.1	0.003	0.53	0.0	0.04	16.99	0.00	2.624	3.29	6.12	0.8	99.2	0.0	0.55	0.32	0.22	0.85	3.19	889	131	1	0	0	0	0	logfile
✔	5M5H	4155	2024-09-23	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.99	0.0	0.06	13.01	0.01	2.385	23.84	0.00	9.5	90.5	0.0	-1.32	1.80	0.15	0.14	—	1086	132	1	0	0	0	0	logfile
✔	8G8E	29846	2024-09-23	2023-02-17	4.2	7.38	5.01	5.9	0.004	0.73	0.0	0.04	28.39	0.00	2.277	15.90	0.79	1.5	98.5	0.0	0.35	0.81	0.66	—	6.0	0.004	0.63	0.0	0.03	27.93	0.00	2.380	14.08	0.00	2.9	97.1	0.0	-0.04	1.84	0.91	0.82	—	2464	140	3	64	0	0	0	logfile
✔	8iKS	35520	2024-09-23	2023-03-01	3.75	3.73	3.52	3.2	0.018	4.07	8.0	0.24	18.13	0.00	1.885	50.36	0.00	8.3	91.7	0.0	-5.59	0.34	0.66	1.82	3.2	0.032	3.03	0.0	0.15	24.79	0.01	2.274	78.19	18.75	50.0	50.0	0.0	-6.94	1.63	0.35	0.70	2.00	1024	144	16	0	0	0	0	logfile

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