Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6L1T	0801	2024-09-24	2019-09-30	3.22	3.42	—	3.4	0.011	0.93	0.0	0.06	14.40	0.00	2.296	12.89	0.00	12.6	87.4	0.0	-5.37	0.49	0.84	2.71	3.4	0.003	0.72	0.0	0.05	16.30	0.00	2.540	7.11	8.82	8.6	91.4	0.0	-3.87	1.42	0.48	0.86	3.47	7010	1000	10	0	0	0	0	logfile
✔	8iBN	35344	2024-09-25	2023-02-10	3.03	3.55	3.13	3.5	0.007	0.99	0.0	0.06	14.42	0.00	2.296	8.00	0.00	4.0	96.0	0.0	-1.98	0.60	0.53	0.83	3.5	0.003	0.59	0.0	0.05	15.74	0.00	2.529	12.25	1.67	4.1	95.9	0.0	-0.50	1.14	0.62	0.56	1.41	8940	1224	8	0	8	0	0	logfile
✔	7ZL4	14777	2024-09-24	2022-04-13	3.45	3.63	3.43	3.5	0.007	1.39	0.0	0.09	16.42	0.00	2.498	3.15	0.00	1.8	98.2	0.0	-4.06	0.67	0.70	0.89	3.5	0.003	0.61	0.0	0.05	16.16	0.00	2.279	7.49	1.64	4.8	95.2	0.0	-2.29	0.98	0.71	0.75	1.12	6678	465	4	0	0	0	3291	logfile
✔	7TT0	26106	2024-09-27	2022-01-31	4.3	4.51	—	4.4	0.005	0.84	0.0	0.05	10.42	0.00	2.151	3.09	0.00	1.2	98.8	0.0	1.30	0.68	0.75	—	4.4	0.002	0.55	0.0	0.04	12.54	0.00	2.364	4.97	0.00	2.3	97.7	0.0	0.95	1.13	0.68	0.76	—	14884	962	5	0	0	0	7253	logfile
✔	6LN8	0927	2024-09-24	2019-12-28	3.1	3.26	3.33	3.3	0.003	0.56	0.0	0.04	12.81	0.00	2.051	6.74	0.00	3.0	97.0	0.0	-2.71	0.70	0.80	2.37	3.3	0.002	0.54	0.0	0.04	15.27	0.00	1.313	7.51	2.11	2.6	97.4	0.0	0.46	0.46	0.68	0.82	1.83	7739	1003	2	0	2	0	0	logfile
✔	7MFD	23813	2024-09-25	2021-04-09	3.66	3.14	—	3.1	0.004	0.67	1.0	0.04	15.47	0.00	2.112	17.69	0.20	7.1	92.9	0.0	-2.17	0.68	0.61	1.02	3.1	0.003	0.72	0.0	0.05	17.31	0.00	2.251	14.01	2.76	5.7	94.3	0.0	-1.63	0.45	0.68	0.60	1.03	9127	1147	6	0	3	0	0	logfile
✔	6MKS	9137	2024-09-29	2018-09-26	3.4	3.28	—	3.2	0.012	1.00	0.0	0.07	9.70	0.00	2.367	2.20	0.00	1.1	98.9	0.0	-1.30	0.74	0.83	1.75	3.2	0.005	0.80	0.0	0.05	18.69	0.00	2.382	15.65	5.40	2.9	97.1	0.0	0.41	0.92	0.76	0.86	1.66	22754	2790	31	0	0	0	0	logfile
✔	8ioT	35623	2024-09-30	2023-03-13	2.51	3.17	2.56	3.0	0.003	0.57	0.0	0.05	11.07	0.00	2.169	5.18	0.00	5.3	94.7	0.0	0.21	0.83	0.84	2.64	3.0	0.003	0.56	0.0	0.05	13.18	0.00	2.440	3.49	1.19	3.7	96.3	0.0	0.39	0.51	0.80	0.83	2.73	24642	3063	12	0	48	0	0	logfile
✔	7TT7	26113	2024-09-26	2022-01-31	4.8	5.05	—	4.9	0.003	0.84	0.0	0.05	10.50	0.00	2.205	5.04	0.00	1.3	98.7	0.0	0.94	0.66	0.63	—	4.8	0.002	0.59	0.0	0.04	11.98	0.00	2.431	3.91	0.00	2.8	97.2	0.0	-0.45	1.60	0.70	0.73	—	13296	867	5	0	0	0	6468	logfile
✔	7D9U	30621	2024-09-24	2020-10-14	3.8	3.97	—	3.8	0.004	0.59	0.0	0.04	12.32	0.00	2.187	8.47	0.12	3.4	96.5	0.1	-2.11	0.81	0.82	2.52	3.8	0.003	0.61	0.0	0.04	14.43	0.00	1.973	8.91	1.30	3.3	96.7	0.0	0.23	0.57	0.83	0.83	2.29	8190	1075	4	0	4	0	0	logfile
✔	5L08	8300	2024-09-26	2016-07-26	4.6	3.95	—	4.3	0.011	1.03	0.0	0.05	11.66	0.00	2.041	6.99	0.00	3.0	96.8	0.2	-0.41	0.34	0.71	—	4.3	0.005	1.27	0.0	0.06	14.88	0.01	2.334	34.68	0.00	7.8	92.2	0.0	-3.15	3.56	0.26	0.72	—	13617	1629	9	0	0	0	0	logfile
✔	6DKF	7952	2024-09-27	2018-05-29	3.7	3.47	—	3.8	0.010	0.88	0.0	0.05	8.96	0.00	1.761	11.87	0.00	3.9	96.1	0.0	-5.10	0.73	0.76	2.82	3.7	0.005	0.76	0.0	0.05	16.07	0.00	2.460	10.79	4.29	3.4	96.6	0.0	-0.04	1.41	0.74	0.79	1.95	17060	2314	14	0	0	0	0	logfile
✔	6LLY	0915	2024-09-24	2019-12-24	2.8	2.92	2.72	2.9	0.003	0.60	0.0	0.04	12.24	0.00	2.043	6.20	0.12	3.1	96.9	0.0	-4.03	0.66	0.79	2.62	2.9	0.003	0.59	0.0	0.04	15.53	0.00	2.012	6.65	2.79	3.2	96.8	0.0	1.08	0.49	0.63	0.80	2.08	7774	1006	2	0	2	0	0	logfile
✔	6GGS	4399	2024-09-24	2018-05-03	3.94	3.85	—	3.8	0.006	1.15	0.0	0.07	14.10	0.00	2.060	14.46	1.27	4.8	95.2	0.0	-6.91	0.49	0.77	1.98	3.8	0.004	1.05	0.0	0.05	17.25	0.00	2.519	18.54	6.96	2.7	97.3	0.0	-3.35	3.51	0.50	0.78	1.84	6880	860	10	0	0	0	0	logfile
✔	8ADV	15371	2024-09-24	2022-07-11	2.98	2.99	2.81	3.0	0.006	0.64	0.0	0.05	12.65	0.00	2.127	16.36	1.45	9.3	90.7	0.0	-3.72	0.48	0.86	5.35	3.0	0.006	0.70	0.0	0.05	16.74	0.00	2.525	9.13	3.04	8.2	91.8	0.0	-3.48	0.36	0.48	0.87	5.48	6920	990	10	0	0	0	0	logfile
✔	6NRV	0497	2024-09-26	2019-01-24	4.0	4.07	—	3.9	0.007	0.96	0.0	0.05	8.19	0.00	1.971	5.74	0.00	11.1	88.9	0.0	-4.59	0.77	0.78	—	3.9	0.003	0.78	0.0	0.04	13.17	0.00	2.614	10.90	1.97	8.4	91.6	0.0	-1.50	1.50	0.79	0.82	—	13637	1898	13	0	0	0	0	logfile
✔	8HEZ	34705	2024-09-23	2022-11-09	2.8	2.66	2.63	2.8	0.015	2.20	2.0	0.09	13.75	0.00	2.144	5.35	2.82	2.6	97.2	0.2	-2.33	0.51	0.78	4.26	2.8	0.003	0.65	0.0	0.04	14.86	0.00	2.226	7.45	1.01	2.8	97.2	0.0	2.32	1.21	0.63	0.84	3.60	4739	611	3	0	3	4	0	logfile
✔	6PoM	20416	2024-09-23	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	25.63	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	4.9	0.010	1.26	0.0	0.06	27.15	0.01	1.943	51.03	0.00	0.0	0.0	0.0	—	1.76	0.74	0.79	—	4937	0	2	230	0	0	0	logfile
✔	7D20	30552	2024-09-26	2020-09-15	3.0	3.72	—	3.6	0.009	0.81	0.0	0.06	28.63	0.00	1.752	12.79	0.00	5.2	94.8	0.0	-3.29	0.78	0.79	2.68	3.6	0.003	0.67	0.0	0.05	28.04	0.00	2.299	8.65	2.25	2.9	97.1	0.0	1.56	0.54	0.72	0.71	2.47	12836	914	11	272	0	0	0	logfile
✔	7V4A	31705	2024-09-23	2021-08-12	3.2	3.19	—	3.3	0.002	0.52	0.0	0.05	14.28	0.00	2.423	8.54	0.00	7.9	92.1	0.0	-5.80	0.42	0.82	3.23	3.2	0.005	0.62	0.0	0.05	16.59	0.00	2.464	4.12	5.45	12.7	87.3	0.0	-4.26	1.59	0.42	0.83	3.47	1653	240	3	0	0	0	0	logfile

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