Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GGQ	40017	2024-09-23	2023-03-08	3.4	3.52	3.32	3.5	0.004	0.55	0.0	0.04	12.05	0.00	2.313	2.87	0.00	0.7	99.3	0.0	2.40	0.54	0.85	2.97	3.5	0.003	0.47	0.0	0.04	13.61	0.00	2.571	2.16	2.40	0.4	99.6	0.0	2.87	0.22	0.53	0.85	2.69	2130	281	2	0	1	0	0	logfile
✔	7Z4i	14498	2024-09-26	2022-03-03	3.12	3.94	3.16	3.5	0.003	0.46	0.0	0.04	17.48	0.00	2.236	7.91	0.58	1.5	98.5	0.0	0.81	0.86	0.82	2.56	3.5	0.002	0.47	0.0	0.03	18.25	0.00	2.516	6.43	0.83	2.0	98.0	0.0	1.70	2.24	0.87	0.84	2.55	13820	1338	5	137	2	0	0	logfile
✔	8ALY	15520	2024-09-28	2022-08-01	2.98	3.34	—	3.3	0.005	0.61	0.0	0.04	16.13	0.00	2.108	5.86	0.36	4.7	95.3	0.0	-1.52	0.75	0.86	3.87	3.3	0.002	0.47	0.0	0.04	17.31	0.00	1.919	4.31	2.00	3.3	96.7	0.0	-0.21	1.10	0.73	0.87	3.47	41300	5180	40	0	20	0	0	logfile
✔	8GGL	40012	2024-09-23	2023-03-08	3.2	3.43	3.25	3.4	0.005	0.62	0.0	0.04	12.38	0.00	2.312	3.08	0.00	1.1	98.9	0.0	1.05	0.54	0.86	2.40	3.4	0.003	0.47	0.0	0.04	14.56	0.00	2.629	1.89	2.82	1.1	98.9	0.0	2.29	0.22	0.51	0.85	1.79	2151	284	2	0	1	1	0	logfile
✔	7PW4	13674	2024-09-28	2021-10-06	3.27	3.69	—	3.5	0.003	0.62	0.0	0.15	14.41	0.00	2.030	4.58	0.00	2.8	97.2	0.0	1.69	0.79	0.82	2.05	3.5	0.002	0.47	0.0	0.04	15.15	0.00	1.934	2.93	1.53	2.7	97.3	0.0	2.39	0.90	0.81	0.85	1.88	18965	2435	8	0	199	0	0	logfile
✔	8U4P	41890	2024-09-24	2023-09-11	3.15	3.53	3.25	3.5	0.004	0.53	0.0	0.04	14.37	0.00	2.240	4.24	0.00	3.3	96.7	0.0	0.52	0.63	0.84	3.05	3.5	0.002	0.47	0.0	0.04	15.30	0.00	2.505	3.09	1.48	3.1	96.9	0.0	1.38	0.25	0.56	0.82	2.73	7006	892	5	0	2	0	0	logfile
✔	6X0V	21985	2024-09-23	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.47	0.0	0.03	12.68	0.00	2.472	16.50	0.00	5.0	95.0	0.0	2.79	1.19	0.40	0.75	—	1384	211	4	0	0	0	62	logfile
✔	8U8Y	42029	2024-09-29	2023-09-18	2.1	2.25	2.12	2.3	0.007	0.75	0.0	0.05	17.23	0.01	2.328	2.24	1.76	2.6	97.4	0.0	0.39	0.74	0.86	5.43	2.3	0.002	0.47	0.0	0.04	17.06	0.00	2.512	3.37	0.56	2.7	97.3	0.0	1.39	1.21	0.71	0.85	5.20	22616	2936	16	0	16	0	0	logfile
✔	8SGP	40463	2024-09-26	2023-04-12	2.69	3.37	2.71	3.2	0.004	0.51	0.0	0.04	11.58	0.00	2.171	4.08	1.33	1.8	98.2	0.0	2.13	0.82	0.80	5.29	3.2	0.002	0.47	0.0	0.04	13.86	0.00	2.599	5.32	1.58	2.1	97.9	0.0	2.22	0.47	0.80	0.90	4.65	12100	1540	8	0	4	0	0	logfile
✔	8GEJ	29972	2024-09-23	2023-03-06	4.2	4.48	4.17	4.2	0.004	0.50	0.0	0.04	8.38	0.00	2.210	6.00	0.00	3.2	96.8	0.0	1.24	0.71	0.79	—	4.2	0.003	0.47	0.0	0.04	8.64	0.00	2.612	3.35	0.00	3.9	96.1	0.0	0.62	1.10	0.71	0.79	—	5436	950	5	0	1	0	0	logfile
✔	6MRU	9213	2024-09-24	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.002	0.47	0.0	0.03	13.38	0.00	2.508	2.34	0.97	0.5	99.5	0.0	5.65	3.08	0.75	0.86	1.83	29107	3705	13	0	0	0	0	logfile
✔	7X6C	33021	2024-09-29	2022-03-07	3.15	3.36	3.18	3.4	0.004	0.74	0.0	0.04	16.82	0.01	2.031	3.20	0.66	3.3	96.7	0.0	-0.29	0.71	0.82	3.06	3.4	0.002	0.47	0.0	0.04	16.50	0.00	2.346	4.82	0.66	3.0	97.0	0.0	2.13	1.13	0.71	0.85	2.85	22632	2700	8	0	24	0	0	logfile
✔	8E2J	27838	2024-09-24	2022-08-15	3.44	3.67	3.24	3.4	0.003	0.63	0.0	0.03	15.86	0.01	2.271	3.43	2.70	2.3	97.7	0.0	-0.36	0.44	0.67	0.61	3.4	0.003	0.47	0.0	0.02	17.86	0.00	2.280	7.99	2.36	1.2	98.8	0.0	4.33	1.68	0.45	0.67	0.86	6012	346	4	0	114	0	2694	logfile
✔	7UB6	26436	2024-09-30	2022-03-14	3.52	3.83	3.48	3.6	0.004	0.67	0.0	0.05	13.16	0.01	2.229	3.31	0.04	2.6	97.4	0.0	-0.83	0.85	0.85	2.91	3.6	0.002	0.47	0.0	0.04	13.59	0.00	2.561	3.49	0.48	2.2	97.8	0.0	0.53	0.26	0.85	0.86	2.67	24762	3105	10	0	36	0	0	logfile
✔	8PSU	17862	2024-09-27	2023-07-13	3.18	2.77	3.14	3.1	0.003	0.45	0.0	0.03	17.34	0.00	1.917	3.46	0.00	2.2	97.6	0.2	1.54	0.71	0.82	3.55	3.1	0.002	0.47	0.0	0.03	17.33	0.00	2.423	1.92	0.60	2.1	97.8	0.1	1.51	1.13	0.72	0.83	3.33	16169	971	6	29	1	0	7957	logfile
✔	8UBG	42088	2024-09-29	2023-09-22	3.5	3.37	3.70	3.4	0.005	0.74	0.0	0.03	13.10	0.01	2.252	1.64	0.00	0.4	99.6	0.0	-2.55	0.48	0.72	1.79	3.4	0.002	0.47	0.0	0.03	16.13	0.00	2.179	4.67	0.89	1.5	98.5	0.0	5.86	0.86	0.49	0.72	1.19	72500	4520	20	0	0	0	37600	logfile
✔	7V0M	26944	2024-09-23	2022-05-10	2.7	2.46	2.64	2.5	0.003	0.56	0.0	0.04	18.10	0.00	2.240	3.55	1.29	3.3	96.7	0.0	0.52	0.56	0.89	4.90	2.5	0.002	0.47	0.0	0.04	18.13	0.00	2.636	4.51	1.81	3.8	96.2	0.0	2.08	0.48	0.55	0.88	4.37	3724	483	4	0	0	60	0	logfile
✔	8TFB	41228	2024-09-29	2023-07-09	2.99	3.29	3.14	3.3	0.003	0.47	2.0	0.04	13.18	0.00	2.087	4.51	0.00	1.6	98.4	0.0	1.54	0.56	0.66	3.91	3.3	0.002	0.47	0.0	0.04	15.83	0.00	2.065	3.15	1.27	1.4	98.6	0.0	1.33	1.19	0.80	0.88	3.47	42056	5316	24	0	12	0	0	logfile
✔	7MQF	23945	2024-09-29	2021-05-05	2.88	2.74	2.86	2.8	0.006	0.72	0.0	0.06	13.21	0.00	2.175	1.01	0.00	0.5	99.5	0.0	1.24	0.72	0.87	6.16	2.8	0.002	0.47	0.0	0.04	14.51	0.00	2.533	1.34	0.00	1.5	98.5	0.0	1.42	0.28	0.78	0.90	5.71	12288	1608	16	16	0	0	0	logfile
✔	6ZNH	11311	2024-09-26	2020-07-06	3.6	3.61	3.56	3.6	0.006	0.84	0.0	0.04	13.44	0.00	2.160	4.03	3.03	2.6	97.4	0.0	0.52	0.57	0.83	1.42	3.6	0.003	0.47	0.0	0.03	15.48	0.00	2.605	1.78	1.52	1.2	98.8	0.0	4.89	1.17	0.57	0.82	1.05	14191	1817	23	0	0	0	0	logfile

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