Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7T38	25651	2024-09-28	2021-12-07	3.8	4.03	—	4.0	0.004	0.78	0.0	0.04	13.60	0.01	2.319	4.19	0.39	3.1	96.9	0.0	-1.24	0.68	0.81	1.54	4.0	0.002	0.52	0.0	0.03	15.48	0.00	2.507	4.83	1.60	3.3	96.7	0.0	1.70	1.56	0.70	0.82	1.38	19404	2432	4	0	0	0	0	logfile
✔	6PQo	20449	2024-09-29	2019-07-09	2.88	3.25	2.81	3.2	0.011	1.29	0.0	0.08	18.20	0.03	2.222	7.38	0.58	3.5	96.5	0.0	-2.93	0.57	0.72	3.08	3.2	0.002	0.56	0.0	0.04	17.77	0.00	2.435	5.11	1.46	2.4	97.6	0.0	2.18	1.26	0.68	0.83	2.16	20312	2448	12	0	36	0	0	logfile
✔	7DF8	30662	2024-09-24	2020-11-06	3.03	3.18	—	3.3	0.006	0.88	0.0	0.06	14.53	0.02	1.986	10.20	0.26	4.8	95.2	0.0	-4.03	0.55	0.81	2.66	3.3	0.002	0.60	0.0	0.04	14.49	0.00	2.567	3.11	1.41	3.8	96.2	0.0	0.48	1.13	0.60	0.85	1.97	7505	918	5	0	20	0	0	logfile
✔	6FUW	4225	2024-09-26	2018-02-28	3.07	3.17	—	3.2	0.010	0.98	0.0	0.06	10.53	0.01	2.193	10.90	0.00	11.8	88.2	0.0	-4.10	0.72	0.81	4.71	3.2	0.002	0.61	0.0	0.04	14.99	0.00	2.391	6.29	1.52	5.6	94.4	0.0	-1.43	1.63	0.72	0.82	3.34	13421	1665	5	8	3	0	0	logfile
✔	8G6o	29776	2024-09-26	2023-02-15	3.1	2.98	3.00	3.1	0.004	0.69	0.0	0.04	17.30	0.00	2.107	3.87	0.00	2.4	97.6	0.0	1.88	0.47	0.78	2.94	3.1	0.002	0.48	0.0	0.04	17.68	0.00	2.179	3.65	0.70	2.7	97.3	0.0	2.60	0.30	0.47	0.80	2.72	13132	845	5	0	0	0	6522	logfile
✔	7X93	33065	2024-09-26	2022-03-15	3.3	4.15	3.28	3.9	0.003	0.54	0.0	0.07	15.00	0.00	1.890	6.39	0.00	5.6	94.3	0.1	-0.89	0.81	0.82	2.89	3.9	0.002	0.55	0.0	0.06	14.49	0.00	2.294	4.60	0.43	5.4	94.5	0.1	-0.95	0.36	0.80	0.82	3.23	12742	828	8	0	8	0	6162	logfile
✔	6NT5	0502	2024-09-23	2019-01-28	4.1	4.28	—	4.1	0.006	0.93	0.0	0.05	10.32	0.01	2.300	3.59	0.41	4.7	95.3	0.0	-2.40	0.73	0.82	—	4.1	0.002	0.57	0.0	0.04	12.65	0.00	2.633	5.12	0.00	1.1	98.9	0.0	1.83	1.15	0.73	0.82	—	4586	584	2	0	0	0	0	logfile
✔	8H12	34422	2024-09-30	2022-09-30	3.44681	3.52	3.40	3.5	0.006	0.81	0.0	0.06	13.96	0.01	2.253	2.68	0.00	4.0	96.0	0.0	-2.04	0.71	0.84	3.55	3.5	0.002	0.55	0.0	0.05	14.89	0.00	2.540	3.50	1.98	2.6	97.4	0.0	-0.56	0.32	0.71	0.85	2.91	24221	3022	9	0	45	0	0	logfile
✔	8F7W	28911	2024-09-25	2022-11-20	3.19	3.44	3.14	3.4	0.004	0.80	0.0	0.06	8.29	0.01	2.282	3.96	0.10	1.9	98.1	0.0	-1.80	0.58	0.75	1.92	3.4	0.002	0.57	0.0	0.04	13.52	0.00	2.533	6.27	2.03	2.1	97.9	0.0	1.11	1.23	0.62	0.81	2.29	9087	1145	7	0	5	0	0	logfile
✔	7o6B	12737	2024-09-26	2021-04-09	3.88	4.21	4.15	3.8	0.003	0.67	0.0	0.04	11.54	0.01	2.128	6.00	0.38	4.3	95.7	0.0	-0.87	0.75	0.67	0.37	3.9	0.002	0.56	0.0	0.04	14.14	0.00	2.330	6.70	1.52	4.5	95.5	0.0	0.72	0.78	0.76	0.69	0.37	14200	879	1	0	0	0	7040	logfile
✔	6PB0	20284	2024-09-24	2019-06-12	3.0	3.47	—	3.5	0.004	0.82	0.0	0.06	9.46	0.01	2.277	4.29	0.22	2.6	97.4	0.0	-2.85	0.58	0.75	2.87	3.5	0.002	0.56	0.0	0.04	14.24	0.00	2.489	6.49	3.34	2.6	97.4	0.0	1.13	2.15	0.55	0.77	1.73	8827	1068	7	0	12	0	0	logfile
✔	6QPi	4614	2024-09-23	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.002	0.43	0.0	0.04	4.24	0.00	2.636	0.89	0.00	2.6	97.4	0.0	2.50	0.60	0.41	0.62	—	2288	462	2	0	0	0	0	logfile
✔	7SFK	25091	2024-09-24	2021-10-04	2.74	2.96	—	3.1	0.008	0.97	0.0	0.04	18.40	0.01	2.265	3.61	0.43	1.8	98.2	0.0	2.37	0.74	0.84	3.90	3.0	0.002	0.49	0.0	0.04	17.33	0.00	2.506	5.24	1.28	2.5	97.5	0.0	2.78	0.38	0.68	0.84	3.71	7419	852	9	0	24	57	0	logfile
✔	8B1R	15803	2024-09-29	2022-09-12	3.2	3.47	3.13	3.3	0.004	0.63	0.0	0.05	9.18	0.00	2.210	7.58	0.34	0.7	99.3	0.0	0.06	0.84	0.87	2.66	3.3	0.002	0.52	0.0	0.04	13.37	0.00	2.278	3.83	0.90	1.3	98.7	0.0	2.34	0.64	0.86	0.90	2.67	21953	2746	6	0	1	0	0	logfile
✔	7XT9	33443	2024-09-27	2022-05-16	3.2	2.96	2.96	3.0	0.004	0.60	0.0	0.05	13.99	0.00	2.077	5.49	0.00	1.6	98.4	0.0	2.46	0.58	0.75	3.36	3.0	0.002	0.50	0.0	0.04	14.81	0.00	2.399	5.62	1.00	1.9	98.1	0.0	1.88	1.20	0.58	0.79	3.16	14875	927	5	0	7	0	7351	logfile
✔	7CZ5	30505	2024-09-24	2020-09-07	2.6	2.89	—	2.9	0.004	0.69	0.0	0.05	13.23	0.00	2.186	6.27	0.00	3.3	96.7	0.0	-2.04	0.60	0.80	4.16	2.9	0.002	0.53	0.0	0.04	15.93	0.00	2.518	5.24	1.57	2.9	97.1	0.0	0.63	0.46	0.62	0.82	2.89	8336	1046	11	0	3	3	0	logfile
✔	6YSZ	10911	2024-09-27	2020-04-23	3.6	2.67	—	3.8	0.004	0.56	0.0	0.04	15.54	0.00	2.295	11.00	0.38	2.9	97.1	0.0	-1.45	0.80	0.81	1.22	3.9	0.002	0.55	0.0	0.03	17.58	0.00	2.468	7.09	3.13	1.1	98.9	0.0	2.42	0.99	0.80	0.79	1.25	15192	1896	6	0	0	0	0	logfile
✔	7SHS	25135	2024-09-24	2021-10-11	4.1	3.40	—	4.3	0.003	0.74	0.0	0.04	13.65	0.01	2.349	5.95	0.00	1.8	98.2	0.0	0.74	0.60	0.71	—	4.1	0.002	0.61	0.0	0.04	14.52	0.00	2.409	10.11	0.00	1.9	98.1	0.0	2.01	1.88	0.61	0.74	—	6873	849	3	0	0	0	0	logfile
✔	7D68	30590	2024-09-24	2020-09-29	3.0	3.24	—	3.3	0.004	0.66	0.0	0.05	13.07	0.00	2.121	7.98	0.76	4.8	95.1	0.1	-2.09	0.62	0.77	3.53	3.2	0.002	0.56	0.0	0.04	15.94	0.00	2.500	5.05	2.81	3.7	96.3	0.0	0.37	0.50	0.62	0.78	2.48	8564	1070	8	0	0	7	0	logfile
✔	7WiT	32535	2024-09-24	2022-01-04	3.21	3.87	3.47	3.8	0.005	0.57	0.0	0.04	11.49	0.00	2.271	4.78	3.11	3.3	96.7	0.0	-0.91	0.61	0.77	2.46	3.8	0.002	0.54	0.0	0.04	13.87	0.00	2.555	4.27	2.44	2.2	97.8	0.0	2.53	0.63	0.62	0.79	1.38	8109	1133	2	0	2	0	0	logfile

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