Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DRN	27678	2024-09-24	2022-07-21	4.12	4.23	4.09	4.2	0.004	0.98	0.0	0.05	15.67	0.01	2.264	18.85	0.26	6.6	93.4	0.0	-2.70	0.54	0.68	—	4.1	0.004	0.80	0.0	0.05	13.95	0.00	2.498	20.93	0.00	5.5	94.4	0.1	-2.36	1.87	0.59	0.73	—	6578	811	2	0	0	0	0	logfile
✔	7X0Z	32930	2024-09-25	2022-02-22	2.96	3.20	—	3.2	0.007	0.79	0.0	0.04	14.78	0.00	1.974	7.24	0.00	4.8	95.2	0.0	0.45	0.65	0.84	3.46	3.2	0.003	0.57	0.0	0.04	16.94	0.00	1.921	4.83	2.06	4.2	95.8	0.0	1.21	0.90	0.66	0.86	2.79	9285	1156	4	0	4	0	0	logfile
✔	7MF3	23810	2024-09-29	2021-04-08	3.4	4.14	—	3.2	0.003	0.68	0.0	0.04	15.41	0.00	1.985	17.36	0.04	6.5	93.5	0.0	-0.34	0.90	0.73	0.19	3.1	0.003	0.77	0.0	0.04	17.74	0.00	1.907	16.59	1.29	7.1	92.9	0.0	-0.76	1.44	0.91	0.74	0.00	22938	2822	12	0	8	0	0	logfile
✔	7LEP	23292	2024-09-27	2021-01-14	3.25	3.75	—	3.7	0.010	0.86	0.0	0.05	15.52	0.00	1.973	11.34	0.40	5.3	94.6	0.1	-0.48	0.68	0.80	3.32	3.7	0.003	0.57	0.0	0.04	14.68	0.00	2.365	6.14	2.68	3.5	96.5	0.0	0.96	1.15	0.69	0.81	2.54	16559	2222	16	0	42	0	0	logfile
✔	7QVi	14178	2024-09-25	2022-01-21	3.0	3.27	—	3.3	0.005	0.73	0.0	0.04	14.80	0.00	1.960	9.67	0.00	3.3	96.7	0.0	-1.28	0.72	0.88	4.43	3.3	0.003	0.56	0.0	0.04	16.43	0.00	1.957	7.35	1.15	3.0	97.0	0.0	0.85	0.36	0.73	0.89	3.41	56600	7128	32	0	32	0	0	logfile
✔	7NGL	12315	2024-09-29	2021-02-09	3.8	4.04	—	3.9	0.012	1.50	0.0	0.07	13.27	0.01	2.054	6.08	0.02	9.2	90.8	0.0	-2.53	0.76	0.74	1.38	3.9	0.002	0.61	0.0	0.04	14.39	0.00	2.361	5.40	0.54	3.6	96.4	0.0	-0.52	0.66	0.76	0.71	1.24	74735	4656	12	0	6	0	37715	logfile
✔	8F7D	28903	2024-09-24	2022-11-18	4.2	4.28	4.25	4.2	0.005	1.00	0.0	0.05	15.55	0.01	2.264	19.74	0.53	6.7	93.3	0.0	-2.71	0.60	0.60	—	4.2	0.003	0.81	0.0	0.05	13.43	0.00	2.519	18.03	0.13	5.7	94.3	0.0	-2.87	1.96	0.65	0.67	—	6578	811	2	0	0	0	0	logfile
✔	6W6M	21559	2024-09-25	2020-03-17	2.7	2.83	2.64	2.8	0.008	1.02	14.0	0.06	12.30	0.01	1.953	13.25	2.97	7.8	92.2	0.0	-3.02	0.62	0.73	2.71	2.8	0.004	0.76	0.0	0.05	14.49	0.01	2.589	4.91	3.44	5.9	94.1	0.0	-1.21	1.68	0.73	0.83	2.56	43638	5768	14	0	0	0	0	logfile
✔	7SSZ	25417	2024-09-27	2021-11-11	3.25	3.49	—	3.5	0.014	1.70	20.0	0.12	14.90	0.01	0.467	7.21	6.31	5.5	94.5	0.0	-2.29	0.56	0.79	3.16	3.5	0.003	0.59	0.0	0.04	15.34	0.00	2.620	4.95	1.70	3.6	96.4	0.0	1.16	0.58	0.69	0.81	3.59	15283	1908	9	0	3	0	0	logfile
✔	8DRo	27679	2024-09-24	2022-07-21	4.06	4.13	4.38	4.1	0.004	0.96	0.0	0.05	15.27	0.01	2.265	14.83	0.40	7.3	92.7	0.0	-3.39	0.46	0.53	—	4.1	0.003	0.79	0.0	0.04	14.04	0.01	2.532	18.64	0.00	8.8	91.2	0.0	-2.60	2.64	0.46	0.53	—	6642	814	2	0	0	0	0	logfile
✔	7TDE	25826	2024-09-28	2021-12-31	3.2	2.37	3.26	2.2	0.006	0.68	0.0	0.04	12.53	0.01	2.312	1.69	0.52	1.8	98.2	0.0	0.04	0.68	0.74	3.07	2.3	0.004	0.53	0.0	0.03	15.21	0.00	2.412	3.61	0.73	2.2	97.8	0.0	2.34	1.84	0.69	0.75	2.71	17734	1075	2	0	0	0	8888	logfile
✔	7QP9	14115	2024-09-26	2022-01-03	2.89	3.12	2.88	3.2	0.004	0.63	0.0	0.04	15.53	0.00	2.249	6.44	0.00	3.6	96.4	0.0	2.00	0.58	0.81	3.64	3.2	0.003	0.52	0.0	0.04	16.56	0.00	2.420	9.80	0.90	3.6	96.4	0.0	1.88	0.73	0.53	0.82	3.66	11087	654	6	0	4	127	5668	logfile
✔	8F75	28895	2024-09-25	2022-11-18	4.0	4.26	4.21	4.1	0.004	0.80	0.0	0.05	15.36	0.01	2.258	12.37	0.62	5.6	94.4	0.0	-2.96	0.70	0.68	—	4.0	0.003	0.82	0.0	0.05	17.25	0.01	2.522	17.75	2.99	5.7	94.3	0.0	-2.65	2.62	0.71	0.71	—	9899	1218	3	0	0	0	0	logfile
✔	6SGX	10187	2024-09-25	2019-08-05	3.7	3.85	—	3.8	0.006	1.03	1.0	0.06	13.90	0.01	2.280	5.19	0.26	9.9	90.0	0.1	-4.82	0.59	0.81	1.45	3.8	0.003	0.71	0.0	0.04	15.55	0.01	2.501	7.89	3.30	9.3	90.7	0.0	-0.37	1.17	0.59	0.81	1.17	11227	1512	5	0	0	0	0	logfile
✔	8HAN	34597	2024-09-27	2022-10-26	4.2	4.31	4.16	3.4	0.003	0.54	0.0	0.03	24.99	0.00	2.219	8.41	0.00	1.1	98.9	0.0	2.88	0.83	0.72	—	2.9	0.003	0.62	0.0	0.04	26.62	0.00	2.465	11.70	0.00	2.4	97.6	0.0	2.15	0.81	0.86	0.79	—	16180	1261	11	294	0	0	0	logfile
✔	8DZR	27806	2024-09-24	2022-08-08	2.61	2.15	2.73	2.0	0.004	0.68	0.0	0.05	12.94	0.00	2.224	4.85	0.00	3.3	96.7	0.0	-0.09	0.76	0.74	3.46	1.9	0.004	0.62	0.0	0.04	15.25	0.00	2.487	6.40	2.12	3.9	96.1	0.0	0.74	0.34	0.78	0.79	3.20	7944	1073	6	0	1	0	0	logfile
✔	8F7B	28901	2024-09-27	2022-11-18	3.15	3.53	3.17	3.5	0.005	0.79	0.0	0.04	18.68	0.00	2.263	5.78	0.23	2.4	97.6	0.0	1.06	0.63	0.79	2.19	3.5	0.003	0.50	0.0	0.04	16.37	0.00	2.424	6.90	2.05	2.4	97.6	0.0	2.32	1.13	0.60	0.80	1.96	16166	1894	18	0	17	6	0	logfile
✔	7P02	13141	2024-09-25	2021-06-29	2.87	3.05	—	3.1	0.012	1.51	0.0	0.10	11.73	0.00	2.086	6.28	1.12	4.6	95.4	0.0	-1.72	0.66	0.81	3.20	3.1	0.006	0.73	0.0	0.05	15.45	0.00	2.462	10.00	3.06	2.4	97.6	0.0	0.38	0.72	0.66	0.85	3.67	9062	1138	8	0	2	0	0	logfile
✔	7V99	31811	2024-09-27	2021-08-24	3.54	4.33	—	3.3	0.002	0.53	0.0	0.03	20.83	0.00	2.258	7.85	0.10	5.9	94.1	0.1	-3.21	0.79	0.68	0.93	3.3	0.003	0.61	0.0	0.03	21.08	0.00	2.463	10.72	2.01	5.2	94.7	0.1	-0.26	1.36	0.82	0.75	0.62	14582	1170	5	249	0	0	0	logfile
✔	7N9C	24256	2024-09-29	2021-06-17	3.71	2.99	—	2.9	0.013	1.63	11.0	0.11	13.88	0.01	2.185	13.51	0.21	2.6	97.4	0.0	-0.75	0.65	0.76	1.80	2.9	0.003	0.62	0.0	0.04	15.44	0.00	2.427	8.68	1.80	3.1	96.9	0.0	-0.84	0.47	0.65	0.76	1.67	22734	3019	5	0	0	0	0	logfile

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