Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7WHP	32507	2024-09-27	2021-12-31	3.7	3.28	—	3.3	0.004	0.62	0.0	0.04	15.13	0.01	2.209	8.40	0.00	2.9	97.0	0.0	-0.85	0.30	0.77	2.67	3.3	0.003	0.77	2.0	0.05	16.40	0.01	2.418	7.39	2.71	2.7	97.2	0.0	-0.27	1.54	0.30	0.77	2.52	17038	2114	4	0	6	0	0	logfile
✔	8CXi	27058	2024-09-27	2022-05-21	3.4	3.96	3.26	3.9	0.008	0.97	5.0	0.09	14.27	0.01	0.857	26.16	3.00	9.6	89.7	0.7	-2.57	0.43	0.75	1.93	3.9	0.005	0.82	0.0	0.05	15.98	0.00	2.330	9.34	3.06	10.6	89.2	0.1	-1.37	1.23	0.30	0.74	1.41	16832	2196	12	0	8	0	0	logfile
✔	7Yo3	33980	2024-09-24	2022-08-01	3.1	2.47	2.93	2.9	0.004	0.67	0.0	0.05	13.95	0.01	2.207	9.01	0.21	3.7	96.3	0.0	0.21	0.26	0.61	1.96	2.9	0.002	0.53	0.0	0.04	16.17	0.00	2.024	6.51	1.65	2.4	97.6	0.0	0.86	0.74	0.30	0.73	2.42	8961	1144	3	0	3	0	0	logfile
✔	8iY7	35816	2024-09-23	2023-04-04	3.71	3.66	3.44	3.6	0.019	4.84	30.0	0.35	18.12	0.00	1.763	38.65	0.00	18.1	81.9	0.0	-5.43	0.30	0.58	2.90	3.5	0.024	3.40	0.0	0.11	26.86	0.01	2.168	45.90	16.67	41.7	51.4	6.9	-6.77	2.44	0.30	0.57	1.40	1464	216	24	0	0	0	0	logfile
✔	7QL4	14063	2024-09-24	2021-12-19	3.2	3.36	2.99	3.5	0.011	1.86	0.0	0.10	12.28	0.01	2.511	0.28	0.00	8.3	91.7	0.0	-1.77	0.26	0.51	0.51	3.4	0.003	0.61	0.0	0.05	14.94	0.01	2.384	6.65	1.26	0.9	99.1	0.0	-1.86	3.11	0.30	0.72	3.23	7074	456	6	0	0	0	3606	logfile
✔	5JXL	8179	2024-09-28	2016-05-13	3.5	3.48	—	3.6	0.008	1.39	0.0	0.06	9.65	0.00	1.795	18.19	0.13	8.7	89.0	2.2	-2.06	0.30	0.77	1.70	3.5	0.003	0.79	0.0	0.05	15.93	0.00	2.195	9.49	4.88	7.2	92.5	0.4	-1.62	1.51	0.30	0.83	1.85	69993	9361	11	0	0	0	0	logfile
✔	8RB5	19026	2024-09-24	2023-12-03	3.3	3.79	3.44	3.7	0.012	1.72	0.0	0.08	14.63	0.01	2.585	0.34	0.64	2.2	97.8	0.0	-2.05	0.29	0.74	1.91	3.7	0.003	0.58	0.0	0.03	17.45	0.01	2.432	7.53	0.64	2.8	97.2	0.0	1.72	1.43	0.30	0.80	1.92	8772	540	3	0	0	0	4422	logfile
✔	8iZZ	35878	2024-09-23	2023-04-09	3.75	3.60	3.46	3.7	0.017	3.95	17.0	0.34	16.30	0.00	1.847	34.96	0.00	15.2	84.8	0.0	-5.84	0.28	0.51	1.98	3.8	0.023	3.52	1.0	0.14	26.99	0.01	2.261	37.55	25.00	54.5	42.4	3.0	-6.96	3.53	0.30	0.53	-0.29	1342	198	22	0	0	0	0	logfile
✔	8RK9	19265	2024-09-23	2023-12-23	3.95	3.73	3.78	20.0	0.002	0.67	0.0	0.05	15.38	0.00	2.268	15.65	0.00	12.8	87.2	0.0	-3.79	0.16	0.00	1.69	7.8	0.003	0.77	0.0	0.05	16.84	0.01	2.538	15.49	3.53	7.1	92.9	0.0	-3.47	4.08	0.30	0.09	0.60	6138	816	6	0	0	0	0	logfile
✔	8oLG	16957	2024-09-23	2023-03-30	4.2	3.16	3.54	4.2	0.002	0.41	0.0	0.05	9.55	0.00	2.261	9.57	0.00	13.5	86.5	0.0	-4.82	0.25	0.63	—	4.2	0.006	0.92	0.0	0.05	15.70	0.00	2.530	19.49	0.00	17.8	82.2	0.0	-4.69	1.60	0.30	0.66	—	1490	195	5	0	0	0	0	logfile
✔	3KTT	5148	2024-09-23	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	179.94	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	2.1	0.004	1.16	0.0	0.05	17.38	0.01	2.322	25.05	3.91	9.2	89.8	1.0	-2.48	1.77	0.31	0.41	—	3855	513	1	0	0	0	0	logfile
✔	7V49	31704	2024-09-23	2021-08-12	3.4	3.45	—	4.1	0.007	1.01	0.0	0.06	13.70	0.00	2.279	22.06	0.00	39.7	60.3	0.0	-7.67	0.33	0.73	5.03	4.1	0.003	0.77	0.0	0.05	15.09	0.00	2.628	11.23	6.50	19.0	81.0	0.0	-5.90	1.12	0.31	0.70	5.14	1221	180	3	0	0	0	0	logfile
✔	8A1S	15086	2024-09-28	2022-06-02	4.0	3.83	3.95	37.0	0.008	0.74	0.0	0.05	14.73	0.00	1.988	10.18	0.97	3.9	96.0	0.2	-0.24	0.26	0.00	—	3.4	0.003	0.71	0.0	0.04	12.82	0.00	2.357	10.63	1.37	3.2	96.6	0.2	-0.88	1.56	0.31	0.17	—	67152	8528	32	0	32	0	0	logfile
✔	8Q9J	18283	2024-09-24	2023-08-20	2.96	2.81	3.01	2.7	0.011	1.86	0.0	0.09	10.83	0.01	2.532	0.00	0.00	1.2	98.8	0.0	-1.24	0.26	0.75	6.29	2.9	0.002	0.56	0.0	0.05	15.77	0.00	2.501	1.47	0.78	1.9	98.1	0.0	-1.65	1.15	0.31	0.84	5.68	6822	438	6	0	0	0	3480	logfile
✔	7WNZ	32636	2024-09-25	2022-01-20	3.4	3.47	—	4.0	0.003	0.52	0.0	0.05	10.39	0.00	2.177	6.80	0.00	6.3	93.7	0.0	-3.33	0.51	0.70	4.51	4.0	0.002	0.59	0.0	0.05	12.62	0.00	2.467	6.80	0.64	6.5	93.5	0.0	-5.80	0.52	0.31	0.66	5.47	9300	650	10	0	0	0	4780	logfile
✔	6QJH	4563	2024-09-23	2019-01-24	3.3	3.70	2.77	3.6	0.012	1.21	3.0	0.10	14.39	0.01	2.673	1.49	1.96	7.0	93.0	0.0	-3.22	0.36	0.83	2.97	3.6	0.003	0.61	0.0	0.05	14.99	0.00	2.556	1.87	1.96	1.2	98.8	0.0	-2.45	1.52	0.31	0.78	2.67	1302	177	3	0	0	0	0	logfile
✔	8V4N	42974	2024-09-23	2023-11-29	2.43	2.63	2.50	2.6	0.002	0.49	0.0	0.04	14.21	0.00	2.260	4.14	0.93	2.3	97.7	0.0	0.80	0.31	0.85	3.24	2.6	0.003	0.58	0.0	0.04	17.37	0.00	2.658	1.71	1.87	2.3	97.7	0.0	0.71	1.01	0.31	0.87	3.49	2067	263	1	0	0	0	0	logfile
✔	7RTN	24684	2024-09-23	2021-08-13	3.4	3.47	—	3.5	0.004	0.63	0.0	0.04	14.58	0.00	2.298	6.03	0.00	6.1	93.9	0.0	0.60	0.31	0.74	3.40	3.5	0.003	0.60	0.0	0.04	16.66	0.00	2.556	5.59	3.42	5.0	95.0	0.0	1.29	0.35	0.31	0.79	2.97	6018	810	3	0	0	0	0	logfile
✔	8PiJ	17683	2024-09-23	2023-06-21	2.9	3.58	2.88	3.3	0.004	0.58	0.0	0.04	18.97	0.00	2.231	3.93	3.46	3.2	96.8	0.0	0.25	0.34	0.89	2.62	3.3	0.003	0.63	0.0	0.04	16.82	0.00	2.533	3.70	3.03	2.1	97.9	0.0	0.92	1.03	0.32	0.89	2.81	2191	288	3	0	2	0	0	logfile
✔	6Qi8	4552	2024-09-27	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.27	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.9	0.004	0.90	0.0	0.05	17.87	0.01	2.185	14.58	2.35	7.5	92.5	0.0	-2.50	1.54	0.32	0.22	0.55	14789	1907	12	0	6	0	0	logfile

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