Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Z7N	39820	2024-09-27	2024-04-20	3.58	3.87	3.60	3.6	0.010	1.35	0.0	0.07	22.40	0.01	1.848	53.22	29.65	22.6	76.7	0.7	-5.94	0.61	0.50	0.67	3.6	0.004	0.96	0.0	0.05	18.54	0.01	2.452	20.66	4.49	14.0	86.0	0.0	-3.47	1.86	0.62	0.52	0.60	16641	2094	15	0	18	0	0	logfile
✔	8iZZ	35878	2024-09-23	2023-04-09	3.75	3.60	3.46	3.7	0.017	3.95	17.0	0.34	16.30	0.00	1.847	34.96	0.00	15.2	84.8	0.0	-5.84	0.28	0.51	1.98	3.8	0.023	3.52	1.0	0.14	26.99	0.01	2.261	37.55	25.00	54.5	42.4	3.0	-6.96	3.53	0.30	0.53	-0.29	1342	198	22	0	0	0	0	logfile
✔	6XAS	22114	2024-09-23	2020-06-04	3.8	3.01	3.14	2.9	0.002	0.49	0.0	0.04	11.33	0.00	1.961	4.92	1.49	2.2	97.8	0.0	-2.00	0.62	0.55	1.72	3.0	0.003	0.63	0.0	0.04	15.07	0.00	1.910	6.85	1.67	3.7	96.3	0.0	-0.02	0.76	0.61	0.53	1.54	46887	5804	16	73	3	0	0	logfile
✔	8K0B	36759	2024-09-23	2023-07-08	3.56	2.51	3.58	1.9	0.004	0.86	2.0	0.05	17.34	0.00	2.195	14.96	1.28	8.0	92.0	0.0	-0.63	0.53	0.53	0.79	1.8	0.003	0.77	0.0	0.04	17.69	0.00	2.400	11.03	5.43	7.4	92.6	0.0	-0.33	0.43	0.53	0.53	0.45	5689	689	1	0	0	0	0	logfile
✔	8JVM	36677	2024-09-23	2023-06-28	3.86	4.13	3.89	3.9	0.006	1.08	1.0	0.06	14.54	0.01	2.138	27.03	1.75	16.3	82.1	1.6	-3.56	0.64	0.54	0.94	3.9	0.004	0.90	0.0	0.05	16.95	0.01	2.537	17.17	2.26	14.2	85.4	0.4	-3.23	1.24	0.64	0.53	0.54	3726	498	3	0	0	0	0	logfile
✔	8DRo	27679	2024-09-24	2022-07-21	4.06	4.13	4.38	4.1	0.004	0.96	0.0	0.05	15.27	0.01	2.265	14.83	0.40	7.3	92.7	0.0	-3.39	0.46	0.53	—	4.1	0.003	0.79	0.0	0.04	14.04	0.01	2.532	18.64	0.00	8.8	91.2	0.0	-2.60	2.64	0.46	0.53	—	6642	814	2	0	0	0	0	logfile
✔	7YRR	34065	2024-09-30	2022-08-10	4.3	4.40	4.25	4.2	0.013	2.13	5.0	0.11	22.39	0.01	1.874	15.92	26.25	21.4	73.0	5.6	-5.95	0.67	0.46	—	4.2	0.014	0.91	0.0	0.04	14.78	0.01	2.203	29.73	0.13	20.0	79.3	0.7	-4.55	1.24	0.70	0.53	—	24937	1697	4	0	0	0	11408	logfile
✔	7YEG	33772	2024-09-25	2022-07-05	3.73	3.29	3.71	3.5	0.002	0.48	0.0	0.04	13.19	0.00	2.191	5.16	0.37	3.1	96.8	0.0	-4.62	0.61	0.57	0.60	3.5	0.004	0.73	1.0	0.04	15.22	0.00	1.958	9.45	1.81	5.0	95.0	0.0	-1.49	1.74	0.58	0.54	1.14	49974	6306	24	0	51	0	0	logfile
✔	3LoS	5137	2024-09-26	2010-02-04	4.3	2.98	—	3.0	0.008	2.44	224.0	0.19	19.87	0.01	2.259	87.93	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.004	1.20	0.0	0.05	15.74	0.01	2.369	22.62	0.00	19.4	77.4	3.2	-4.64	1.35	0.61	0.54	—	63712	8512	16	0	0	0	0	logfile
✔	7WoG	32651	2024-09-23	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.2	0.003	0.72	0.0	0.05	11.04	0.00	2.444	17.39	0.00	14.1	85.9	0.0	-2.82	0.98	0.54	0.54	—	3362	433	3	0	0	0	0	logfile
✔	3JC2	3245	2024-09-23	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	18.51	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.004	0.91	0.0	0.05	17.36	0.01	2.543	13.06	2.68	7.2	92.1	0.6	-1.72	2.35	0.24	0.54	1.76	3911	482	4	0	32	0	0	logfile
✔	7JLX	22383	2024-09-23	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.005	0.94	0.0	0.05	8.03	0.01	2.232	3.80	0.00	17.7	81.1	1.2	-3.30	2.46	0.48	0.54	—	3288	664	4	0	0	0	0	logfile
✔	8ENQ	28276	2024-09-23	2022-09-30	3.6	3.97	3.73	4.4	0.004	0.77	0.0	0.05	13.93	0.00	2.257	14.40	0.00	0.3	99.7	0.0	1.45	0.35	0.32	1.15	4.2	0.006	1.14	0.0	0.05	16.41	0.00	2.473	28.61	4.42	19.0	81.0	0.0	-4.70	2.05	0.47	0.54	3.52	5593	777	7	0	0	0	0	logfile
✔	8UiP	42301	2024-09-23	2023-10-10	4.3	2.81	4.26	5.6	0.004	0.79	0.0	0.04	16.55	0.01	2.087	25.91	0.00	13.1	86.9	0.0	-2.49	0.41	0.55	—	5.1	0.003	0.75	0.0	0.04	14.33	0.00	2.568	14.63	0.00	8.4	91.6	0.0	-2.17	2.12	0.41	0.54	—	2316	303	3	0	0	0	0	logfile
✔	8GF7	29980	2024-09-23	2023-03-07	4.8	3.61	4.18	4.4	0.003	0.68	0.0	0.06	10.15	0.00	1.681	53.15	0.00	10.2	89.8	0.0	-4.11	0.33	0.53	—	4.4	0.004	1.08	0.0	0.06	15.32	0.00	2.482	16.00	0.00	14.8	85.2	0.0	-3.95	2.18	0.33	0.54	—	3774	540	12	0	6	0	0	logfile
✔	8X5Y	38075	2024-09-23	2023-11-20	3.0	3.88	3.52	3.9	0.013	0.90	0.0	0.05	14.80	0.01	2.346	8.21	0.40	7.5	92.5	0.0	-0.78	0.38	0.58	2.00	3.9	0.004	0.80	0.0	0.04	16.86	0.01	2.588	9.07	2.81	6.7	93.3	0.0	-0.34	0.31	0.33	0.54	1.31	2292	274	2	0	1	0	0	logfile
✔	8BC1	15959	2024-09-24	2022-10-14	2.93	3.48	2.73	3.5	0.002	0.46	0.0	0.04	10.38	0.00	2.030	7.96	3.43	2.9	97.1	0.0	1.53	0.38	0.52	1.52	3.5	0.003	0.75	0.0	0.04	15.38	0.01	2.193	13.90	2.25	3.4	96.6	0.0	0.77	1.04	0.39	0.54	1.44	8684	1054	4	0	6	0	0	logfile
✔	8G3H	29699	2024-09-24	2023-02-07	3.6	3.80	3.20	3.8	0.016	2.32	9.0	0.26	17.25	0.02	2.228	13.55	4.37	8.7	91.3	0.0	-4.03	0.59	0.52	0.65	3.8	0.003	1.09	0.0	0.09	17.86	0.00	2.389	15.07	2.86	3.6	96.4	0.0	-1.36	2.58	0.61	0.54	1.10	6541	841	2	0	2	0	0	logfile
✔	8T23	40979	2024-09-24	2023-06-05	3.87	4.12	4.24	7.5	0.005	1.00	0.0	0.05	19.22	0.01	2.136	16.85	0.59	11.9	88.1	0.0	-3.06	0.59	0.48	0.19	7.5	0.003	0.80	0.0	0.05	18.15	0.01	2.558	14.86	4.98	11.4	88.6	0.0	-2.36	0.88	0.62	0.54	0.19	6451	781	6	0	6	0	0	logfile
✔	7NiU	12365	2024-09-27	2021-02-14	4.2	3.68	—	3.5	0.008	1.01	0.0	0.05	16.08	0.01	2.110	34.12	1.67	14.7	85.0	0.2	-5.18	0.57	0.58	—	3.5	0.003	0.69	0.0	0.04	14.36	0.00	2.400	10.53	0.12	5.2	94.8	0.0	-1.24	1.66	0.56	0.55	—	15495	2015	6	0	2	0	0	logfile

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