Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6TYi	20583	2024-09-25	2019-08-09	3.3	3.55	—	3.5	0.012	1.03	0.0	0.05	16.67	0.00	1.796	11.31	0.43	4.8	95.1	0.1	-0.84	0.70	0.81	1.90	3.5	0.002	0.51	0.0	0.03	17.46	0.00	2.465	6.01	1.72	3.0	97.0	0.0	4.28	1.17	0.67	0.80	1.16	9184	1186	11	0	4	0	0	logfile
✔	6YSZ	10911	2024-09-27	2020-04-23	3.6	2.67	—	3.8	0.004	0.56	0.0	0.04	15.54	0.00	2.295	11.00	0.38	2.9	97.1	0.0	-1.45	0.80	0.81	1.22	3.9	0.002	0.55	0.0	0.03	17.58	0.00	2.468	7.09	3.13	1.1	98.9	0.0	2.42	0.99	0.80	0.79	1.25	15192	1896	6	0	0	0	0	logfile
✔	7RZQ	24774	2024-09-23	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.002	0.29	0.0	0.03	14.97	0.00	2.630	4.28	1.07	0.0	100.0	0.0	6.40	0.29	0.81	0.82	1.34	2421	322	6	0	0	0	0	logfile
✔	7TAN	25777	2024-09-26	2021-12-21	3.0	2.95	—	3.1	0.003	0.47	0.0	0.03	27.16	0.00	2.287	3.25	0.00	2.8	97.2	0.0	2.18	0.82	0.85	2.22	3.1	0.004	0.52	0.0	0.03	27.71	0.00	2.417	2.33	1.56	2.1	97.9	0.0	2.24	0.33	0.84	0.87	1.93	12119	768	12	294	0	0	0	logfile
✔	6L3U	0826	2024-09-28	2019-10-15	2.53	2.59	2.48	2.6	0.010	0.96	0.0	0.05	17.46	0.01	2.206	0.45	3.01	1.9	98.1	0.0	-2.86	0.64	0.84	4.02	2.6	0.002	0.53	0.0	0.03	15.63	0.00	2.496	1.25	0.60	1.4	98.6	0.0	2.93	0.89	0.62	0.85	3.16	19698	1206	18	0	12	174	9588	logfile
✔	7RZR	24775	2024-09-23	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.005	0.40	0.0	0.03	15.17	0.00	2.631	4.03	0.35	0.0	100.0	0.0	5.91	0.32	0.82	0.83	3.51	2448	324	6	0	0	0	0	logfile
✔	7RZU	24778	2024-09-23	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.003	0.48	0.0	0.03	15.61	0.00	2.626	4.66	1.40	0.0	100.0	0.0	5.29	0.48	0.80	0.81	1.95	2439	324	6	0	0	0	0	logfile
✔	7WAY	32389	2024-09-25	2021-12-15	2.9	3.11	—	2.9	0.004	0.54	0.0	0.04	19.59	0.00	2.172	5.59	0.00	2.8	97.2	0.0	1.31	0.87	0.85	2.73	2.9	0.003	0.55	0.0	0.03	20.05	0.00	2.508	4.13	0.48	2.2	97.8	0.0	1.88	0.34	0.88	0.88	2.26	11453	960	4	175	0	0	0	logfile
✔	7Y00	33536	2024-09-26	2022-06-03	3.96	4.73	3.89	3.9	0.004	0.69	0.0	0.04	27.46	0.00	1.717	12.80	0.31	1.5	98.5	0.0	0.85	0.90	0.80	0.94	3.9	0.005	0.91	1.0	0.03	28.92	0.00	2.081	12.39	1.89	2.3	97.6	0.1	2.07	1.72	0.93	0.88	0.93	12411	762	10	310	0	0	0	logfile
✔	6WKT	21708	2024-09-23	2020-04-16	3.4	3.21	3.09	3.3	0.004	0.81	0.0	0.05	13.97	0.01	2.329	0.00	0.00	1.9	98.1	0.0	-3.42	0.65	0.75	3.69	3.3	0.002	0.53	0.0	0.03	15.20	0.00	2.587	7.85	0.00	3.8	96.2	0.0	4.44	1.35	0.63	0.74	3.44	3152	424	4	0	0	0	0	logfile
✔	7RZT	24777	2024-09-23	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.1	0.003	0.32	0.0	0.03	15.49	0.00	2.612	5.44	0.00	0.0	100.0	0.0	6.18	0.22	0.80	0.83	2.98	2451	324	6	0	0	0	0	logfile
✔	7RZS	24776	2024-09-23	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.003	0.41	0.0	0.03	16.11	0.00	2.489	3.44	1.42	0.0	100.0	0.0	5.54	0.87	0.79	0.82	1.14	2445	324	6	0	0	0	0	logfile
✔	7X57	33010	2024-09-25	2022-03-04	3.63	3.95	—	3.8	0.003	0.63	0.0	0.03	28.74	0.01	2.286	9.90	0.20	1.4	98.6	0.0	0.39	0.82	0.76	1.31	3.8	0.004	0.64	0.0	0.03	29.70	0.00	2.408	11.32	2.97	2.9	97.1	0.0	2.47	1.25	0.83	0.79	1.28	9767	595	10	242	0	0	0	logfile
✔	8ATF	15647	2024-09-27	2022-08-23	3.45	3.54	3.42	3.5	0.013	1.99	4.0	0.11	25.04	0.03	2.090	4.15	1.81	3.1	96.2	0.7	-2.09	0.71	0.80	2.97	3.5	0.003	0.58	0.0	0.03	25.69	0.00	2.487	5.87	2.48	1.6	98.4	0.0	2.54	2.23	0.78	0.84	1.51	15719	1219	13	286	1	0	0	logfile
✔	7EG6	31106	2024-09-26	2021-03-24	3.1	3.55	—	3.2	0.007	0.73	0.0	0.04	27.43	0.01	2.328	1.56	0.00	0.9	99.1	0.0	-1.78	0.88	0.86	3.75	3.2	0.004	0.56	0.0	0.03	27.86	0.00	2.508	5.65	0.31	1.6	98.4	0.0	3.28	0.43	0.89	0.89	2.54	12118	779	11	292	0	0	0	logfile
✔	7P0Z	13153	2024-09-26	2021-07-01	2.43	2.02	2.41	2.2	0.016	0.94	0.0	0.06	14.02	0.01	2.141	7.29	0.00	4.3	95.7	0.0	1.90	0.83	0.86	2.91	2.3	0.003	0.52	0.0	0.03	18.17	0.00	2.559	2.88	2.01	0.7	99.3	0.0	5.25	0.54	0.84	0.87	2.05	12873	1652	7	0	0	0	0	logfile
✔	6T79	10390	2024-09-25	2019-10-21	3.2	3.08	3.18	3.1	0.006	0.85	0.0	0.05	28.19	0.01	2.178	5.33	0.00	2.0	98.0	0.0	-3.23	0.73	0.78	2.49	3.0	0.004	0.62	0.0	0.03	28.60	0.00	2.273	7.98	2.02	1.8	98.2	0.0	1.12	1.17	0.75	0.82	2.60	12121	776	10	290	0	0	0	logfile
✔	7Jo9	22408	2024-09-27	2020-08-06	3.3	3.00	—	3.2	0.008	0.74	0.0	0.04	25.95	0.01	2.222	4.80	0.41	5.1	94.9	0.0	0.34	0.79	0.82	1.58	3.2	0.003	0.57	0.0	0.03	26.36	0.00	2.486	4.52	1.24	2.2	97.8	0.0	1.79	0.63	0.82	0.86	1.89	14994	1125	12	290	1	0	0	logfile
✔	6S01	10069	2024-09-26	2019-06-13	3.2	3.27	3.17	3.2	0.008	0.72	0.0	0.04	26.20	0.01	2.284	3.83	1.82	3.9	96.1	0.0	-5.85	0.74	0.77	3.18	3.2	0.004	0.59	0.0	0.03	27.49	0.00	2.092	7.29	2.24	2.9	97.1	0.0	1.12	0.45	0.82	0.85	2.82	12959	853	11	300	0	0	0	logfile
✔	7RZV	24779	2024-09-23	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.35	0.0	0.03	15.93	0.00	2.430	3.69	1.01	0.0	100.0	0.0	5.97	0.88	0.83	0.83	1.79	2562	339	6	0	0	0	0	logfile

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