Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6ZJA	11233	2024-09-30	2020-06-28	2.0	2.10	2.09	2.1	0.006	0.86	0.0	0.06	14.31	0.01	1.974	0.60	1.37	4.1	95.9	0.0	-0.40	0.79	0.87	6.97	2.1	0.003	0.68	0.0	0.05	16.09	0.00	1.868	1.30	0.68	4.2	95.8	0.0	0.23	0.39	0.78	0.90	6.59	77951	9684	60	0	36	3191	0	logfile
✔	7RXB	24727	2024-09-24	2021-08-22	3.07	3.22	—	3.2	0.009	1.15	0.0	0.05	16.23	0.01	2.437	0.72	0.00	6.0	94.0	0.0	-4.88	0.67	0.89	3.48	3.2	0.004	0.59	0.0	0.04	15.08	0.00	2.595	1.32	1.26	4.6	95.4	0.0	-0.16	0.26	0.64	0.89	3.21	8506	1096	4	0	8	0	0	logfile
✔	7Xo3	33335	2024-09-23	2022-04-30	2.6	2.32	1.68	2.7	0.002	0.41	0.0	0.05	12.37	0.00	2.223	4.70	0.00	8.2	91.8	0.0	-3.31	0.45	0.81	5.78	2.6	0.003	0.55	0.0	0.05	16.00	0.00	2.641	1.32	1.52	10.4	89.6	0.0	-1.85	0.37	0.50	0.85	5.90	2598	378	6	0	0	0	0	logfile
✔	6VAB	21135	2024-09-23	2019-12-17	4.9	6.51	—	6.8	0.005	0.91	0.0	0.06	8.70	0.01	2.264	14.98	0.00	6.8	93.2	0.0	-3.84	0.71	0.69	—	6.6	0.002	0.63	0.0	0.04	4.29	0.00	2.555	1.33	0.00	4.4	95.6	0.0	0.08	1.87	0.72	0.67	—	4642	938	4	0	0	0	0	logfile
✔	7MQF	23945	2024-09-29	2021-05-05	2.88	2.74	2.86	2.8	0.006	0.72	0.0	0.06	13.21	0.00	2.175	1.01	0.00	0.5	99.5	0.0	1.24	0.72	0.87	6.16	2.8	0.002	0.47	0.0	0.04	14.51	0.00	2.533	1.34	0.00	1.5	98.5	0.0	1.42	0.28	0.78	0.90	5.71	12288	1608	16	16	0	0	0	logfile
✔	7DZY	30921	2024-09-28	2021-01-26	3.6	3.83	3.38	3.1	0.020	2.12	0.0	0.00	4.32	0.01	1.980	3.14	0.00	3.7	95.4	0.9	-0.42	0.43	0.27	—	3.3	0.003	0.89	0.0	0.00	5.59	0.00	2.061	1.34	0.00	12.1	87.8	0.1	-3.07	2.19	0.71	0.71	—	18708	4677	9	0	0	0	0	logfile
✔	6L3T	0825	2024-09-28	2019-10-15	2.34	2.41	2.27	2.4	0.010	1.07	0.0	0.05	18.40	0.01	2.306	1.05	3.61	1.0	99.0	0.0	-3.24	0.68	0.86	4.85	2.4	0.003	0.65	0.0	0.04	15.64	0.00	2.411	1.35	1.81	1.6	98.4	0.0	2.53	0.49	0.69	0.88	4.50	19722	1206	18	0	6	204	9588	logfile
✔	6oR5	9032	2024-09-25	2019-04-29	4.0	4.23	—	3.9	0.008	1.12	0.0	0.05	15.95	0.00	2.245	4.84	0.00	17.3	82.4	0.3	-5.53	0.76	0.79	—	3.9	0.004	0.70	0.0	0.04	10.42	0.00	2.477	1.35	0.00	19.2	80.8	0.0	-2.56	1.36	0.78	0.80	—	10364	2058	2	0	5	0	0	logfile
✔	7TJY	25946	2024-09-28	2022-01-17	3.8	4.84	3.78	3.6	0.020	2.29	0.0	0.00	6.75	0.01	2.333	0.12	0.00	4.3	94.3	1.5	-0.54	0.59	0.68	—	3.5	0.006	0.90	0.0	0.00	5.46	0.00	2.448	1.35	0.00	10.8	89.0	0.3	0.00	1.47	0.82	0.86	—	20228	5056	27	0	0	0	0	logfile
✔	8JEX	36202	2024-09-23	2023-05-16	3.1	3.05	2.75	3.3	0.012	1.13	0.0	0.06	12.57	0.00	2.505	7.63	0.00	3.8	96.2	0.0	-4.98	0.45	0.83	2.64	3.2	0.004	0.56	0.0	0.05	14.06	0.00	2.607	1.37	2.14	3.5	96.5	0.0	-3.09	0.94	0.47	0.87	3.07	2616	330	18	0	60	0	0	logfile
✔	8Q9L	18285	2024-09-25	2023-08-20	2.76	2.36	2.64	2.6	0.011	1.76	0.0	0.09	11.63	0.01	2.537	0.00	0.00	1.6	98.4	0.0	-1.68	0.29	0.76	6.43	2.6	0.003	0.56	0.0	0.05	17.58	0.00	2.459	1.37	1.22	1.4	98.6	0.0	-2.32	1.42	0.37	0.86	6.97	10233	657	9	0	0	0	5220	logfile
✔	8GGJ	40010	2024-09-23	2023-03-08	3.5	3.54	3.35	3.5	0.004	0.53	0.0	0.04	13.04	0.00	2.245	2.07	0.00	0.4	99.6	0.0	1.95	0.54	0.87	3.64	3.5	0.003	0.49	0.0	0.04	14.40	0.00	2.535	1.38	1.36	0.7	99.3	0.0	2.62	1.24	0.58	0.87	2.46	2201	286	2	0	1	1	0	logfile
✔	8oRE	17121	2024-09-23	2023-04-13	2.5	2.67	2.44	2.7	0.011	2.09	7.0	0.14	10.93	0.01	2.570	0.00	0.00	8.0	92.0	0.0	-2.10	0.32	0.74	5.29	2.7	0.003	0.65	0.0	0.05	17.80	0.00	2.515	1.38	1.49	6.7	93.3	0.0	-2.05	3.45	0.36	0.80	4.68	3615	231	3	0	0	0	1845	logfile
✔	8H3E	34465	2024-09-30	2022-10-08	3.06	3.44	3.40	3.3	0.005	0.52	0.0	0.04	16.70	0.00	1.960	8.20	0.22	5.4	94.6	0.0	-2.27	0.81	0.89	2.90	3.3	0.002	0.53	0.0	0.05	16.84	0.00	2.566	1.38	2.62	4.0	96.0	0.0	-1.55	0.90	0.81	0.88	2.59	24957	3159	6	0	18	0	0	logfile
✔	8oQ7	17107	2024-09-27	2023-04-11	2.2	2.13	2.08	2.2	0.007	0.87	0.0	0.09	10.81	0.01	2.290	1.40	0.33	1.5	98.5	0.0	2.27	0.73	0.85	5.65	2.1	0.005	0.74	0.0	0.05	14.30	0.01	2.604	1.40	1.79	2.0	98.0	0.0	1.73	1.01	0.73	0.87	5.84	14702	1680	15	0	57	505	0	logfile
✔	8GGN	40014	2024-09-23	2023-03-08	3.3	3.42	3.22	3.4	0.005	0.58	0.0	0.04	13.18	0.00	2.248	2.82	0.00	0.7	99.3	0.0	2.26	0.55	0.86	3.24	3.4	0.003	0.50	0.0	0.04	14.65	0.00	2.599	1.41	2.80	1.4	98.6	0.0	3.08	0.26	0.55	0.86	2.59	2168	285	2	0	1	0	0	logfile
✔	8Q98	18271	2024-09-24	2023-08-20	1.75	1.75	1.77	1.8	0.011	1.66	0.0	0.07	9.83	0.01	2.543	0.00	0.00	0.5	99.5	0.0	-0.80	0.22	0.65	8.64	1.8	0.002	0.51	0.0	0.05	13.42	0.00	2.608	1.42	0.51	1.1	98.9	0.0	-0.45	0.90	0.43	0.90	8.04	7032	450	6	0	0	0	3588	logfile
✔	8QCP	18331	2024-09-24	2023-08-28	3.21	3.22	3.18	3.3	0.011	1.86	1.0	0.09	11.52	0.01	2.543	0.00	0.00	7.5	92.5	0.0	-2.03	0.31	0.78	5.53	3.3	0.002	0.59	0.0	0.05	16.23	0.00	2.486	1.43	2.29	3.9	96.1	0.0	-2.11	0.96	0.35	0.86	5.41	7002	453	6	0	0	0	3567	logfile
✔	7KoD	22972	2024-09-27	2020-11-08	1.655	2.30	—	1.9	0.001	0.33	0.0	0.03	8.49	0.00	2.288	0.80	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	1.9	0.004	0.50	0.0	0.03	13.79	0.00	2.412	1.44	0.36	0.6	99.4	0.0	5.22	0.82	0.87	0.93	7.98	68186	4128	48	0	0	1727	32643	logfile
✔	7QV6	14168	2024-09-23	2022-01-19	3.5	3.33	3.32	3.5	0.011	0.59	0.0	0.05	11.56	0.00	2.480	1.86	0.00	1.1	98.9	0.0	-1.85	0.39	0.86	5.72	3.5	0.002	0.41	0.0	0.06	12.08	0.00	2.506	1.45	0.00	0.0	100.0	0.0	0.74	0.42	0.41	0.86	6.38	4842	306	18	0	0	0	2556	logfile

• ← previous
• Page 4 of 539
• next →