Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CTG	26989	2024-09-23	2022-05-14	3.8	3.16	3.72	3.3	0.004	0.98	0.0	0.05	7.62	0.01	2.113	12.33	6.90	9.7	88.5	1.8	-3.04	0.57	0.35	-0.17	2.3	0.004	0.90	0.0	0.04	6.99	0.01	2.359	5.06	3.45	11.0	88.7	0.3	-2.69	1.99	0.59	0.42	1.71	5100	1006	4	0	1	0	0	logfile
✔	8G0C	29653	2024-09-28	2023-01-31	2.8	3.69	2.84	2.8	0.005	0.63	0.0	0.21	9.61	0.00	1.814	0.39	0.00	2.6	97.3	0.0	0.98	0.69	0.67	—	2.8	0.005	0.72	0.0	0.04	7.14	0.00	1.780	0.16	0.00	6.9	93.1	0.0	1.70	1.18	0.79	0.80	—	19874	4860	30	0	16	0	0	logfile
✔	8G09	29650	2024-09-28	2023-01-31	3.1	3.88	3.23	3.2	0.005	0.66	0.0	0.23	7.86	0.00	1.766	0.75	0.00	3.1	96.9	0.0	0.54	0.74	0.70	—	3.4	0.007	0.86	0.0	0.04	7.24	0.00	1.656	0.55	0.00	10.1	89.9	0.0	0.43	0.70	0.81	0.82	—	19599	4860	26	0	10	0	0	logfile
✔	8G0D	29654	2024-09-28	2023-01-31	2.9	3.84	3.02	2.9	0.006	0.65	0.0	0.21	9.52	0.00	1.844	0.67	0.00	2.6	97.3	0.0	0.74	0.68	0.65	—	2.9	0.004	0.71	0.0	0.05	7.67	0.00	1.786	0.39	0.00	7.1	92.8	0.0	1.37	1.61	0.80	0.81	—	19874	4860	30	0	16	0	0	logfile
✔	6oLL	20116	2024-09-28	2019-04-16	4.1	4.59	—	4.4	0.004	1.05	0.0	0.06	6.94	0.01	2.400	0.40	0.00	2.0	97.8	0.2	-0.51	0.67	0.58	—	4.4	0.007	1.11	0.0	0.05	7.72	0.01	2.412	8.19	0.00	16.6	82.9	0.5	-4.23	2.11	0.74	0.69	—	10426	2114	6	0	0	0	0	logfile
✔	6oG3	20051	2024-09-23	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.005	1.11	0.0	0.00	8.01	0.00	2.615	51.00	0.00	13.0	87.0	0.0	-1.64	2.16	0.67	0.87	—	1215	396	4	0	9	0	0	logfile
✔	6oDJ	20021	2024-09-30	2019-03-26	3.5	3.75	—	3.7	0.009	1.50	0.0	0.07	11.32	0.01	2.438	2.03	0.00	0.0	0.0	0.0	—	0.81	0.81	—	3.7	0.012	1.74	0.0	0.07	8.02	0.00	2.306	2.41	0.00	0.0	0.0	0.0	—	0.61	0.82	0.83	—	25415	0	17	0	5083	0	0	logfile
✔	7JLX	22383	2024-09-23	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.005	0.94	0.0	0.05	8.03	0.01	2.232	3.80	0.00	17.7	81.1	1.2	-3.30	2.46	0.48	0.54	—	3288	664	4	0	0	0	0	logfile
✔	6PZi	20535	2024-09-24	2019-07-31	4.5	4.80	—	4.4	0.005	1.13	0.0	0.05	9.01	0.01	2.253	2.60	0.00	6.3	93.7	0.0	-3.83	0.67	0.80	—	4.4	0.002	0.65	0.0	0.04	8.23	0.00	2.567	3.54	0.00	3.0	97.0	0.0	2.30	0.52	0.67	0.83	—	7985	1412	2	0	1	0	0	logfile
✔	8W20	43736	2024-09-27	2024-02-19	4.3	4.55	4.30	4.4	0.008	1.34	2.0	0.06	6.79	0.01	2.278	1.60	0.45	2.6	97.2	0.3	1.23	0.68	0.69	—	4.5	0.005	0.72	0.0	0.04	8.29	0.00	2.587	3.17	0.00	4.6	95.4	0.0	1.21	1.83	0.70	0.72	—	15412	2814	11	0	0	0	0	logfile
✔	7MJP	23881	2024-09-27	2021-04-20	4.2	4.40	—	4.3	0.008	1.11	0.0	0.07	10.54	0.01	1.477	2.76	0.00	9.1	90.9	0.0	-1.16	0.51	0.65	—	4.3	0.002	0.62	0.0	0.05	8.32	0.00	2.518	0.24	0.00	7.4	92.6	0.0	-0.39	1.34	0.55	0.68	—	14163	2818	10	0	8	0	0	logfile
✔	7R9K	24328	2024-09-24	2021-06-29	4.1	4.93	—	4.0	0.002	0.35	0.0	0.04	4.65	0.00	2.223	3.24	0.00	10.3	89.1	0.6	-4.05	0.83	0.71	—	4.1	0.003	0.54	0.0	0.04	8.46	0.00	2.435	6.09	0.00	4.8	95.2	0.0	-0.21	1.78	0.89	0.83	—	7726	505	1	0	0	0	3938	logfile
✔	7JG9	22315	2024-09-28	2020-07-18	3.4	2.37	3.49	3.4	0.009	1.56	0.0	0.20	9.66	0.01	2.424	0.51	0.00	2.9	96.8	0.3	-1.25	0.61	0.54	—	2.3	0.006	1.10	0.0	0.10	8.50	0.01	2.480	1.02	0.00	15.6	84.3	0.1	-1.84	1.32	0.72	0.71	—	19569	4826	26	0	7	0	0	logfile
✔	8GEJ	29972	2024-09-23	2023-03-06	4.2	4.48	4.17	4.2	0.004	0.50	0.0	0.04	8.38	0.00	2.210	6.00	0.00	3.2	96.8	0.0	1.24	0.71	0.79	—	4.2	0.003	0.47	0.0	0.04	8.64	0.00	2.612	3.35	0.00	3.9	96.1	0.0	0.62	1.10	0.71	0.79	—	5436	950	5	0	1	0	0	logfile
✔	7BZX	30262	2024-09-23	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.9	0.005	1.11	0.0	0.05	8.68	0.00	2.286	14.37	0.00	21.3	78.7	0.0	-4.55	2.97	0.75	0.58	—	5652	1154	2	0	0	0	0	logfile
✔	6HYP	0309	2024-09-26	2018-10-22	4.4	4.53	—	4.4	0.003	0.72	0.0	0.05	8.72	0.00	1.943	1.67	0.34	7.3	92.2	0.4	-5.99	0.75	0.69	—	4.4	0.004	0.79	0.0	0.04	8.75	0.00	2.438	3.74	0.00	12.8	87.0	0.1	-1.46	0.62	0.77	0.74	—	12392	2082	2	0	192	0	0	logfile
✔	6PZB	20533	2024-09-24	2019-07-31	4.55	4.69	—	4.5	0.009	1.24	0.0	0.06	8.37	0.01	2.231	3.11	0.00	5.9	94.1	0.0	-3.87	0.62	0.76	—	4.5	0.004	0.71	0.0	0.04	8.84	0.00	2.526	6.86	0.00	6.3	93.7	0.0	0.83	0.59	0.64	0.78	—	7747	1357	1	0	0	0	0	logfile
✔	6EZo	4162	2024-09-28	2017-11-16	4.1	4.20	4.05	4.2	0.008	1.36	4.0	0.09	10.35	0.01	1.569	8.78	3.41	18.5	80.8	0.8	-5.42	0.78	0.79	—	4.1	0.003	0.73	0.0	0.05	9.11	0.00	2.531	3.29	0.00	14.8	85.2	0.1	-2.91	0.48	0.77	0.77	—	18758	3367	11	0	1	0	0	logfile
✔	5J8V	8073	2024-09-29	2016-04-08	4.9	4.81	—	4.7	0.024	2.67	214.0	0.16	10.17	0.01	1.145	73.68	28.71	6.2	86.5	7.3	2.50	0.71	0.67	—	4.7	0.004	0.98	0.0	0.04	9.14	0.00	2.297	6.53	0.32	12.7	85.8	1.5	-1.03	0.82	0.75	0.75	—	73616	13812	4	0	0	0	0	logfile
✔	7R9M	24329	2024-09-24	2021-06-29	4.0	4.58	—	3.9	0.002	0.38	0.0	0.04	4.68	0.00	2.214	3.88	0.00	8.3	90.9	0.8	-4.83	0.85	0.77	—	3.9	0.002	0.54	0.0	0.04	9.17	0.00	2.482	4.79	0.25	2.2	97.8	0.0	-0.26	1.71	0.86	0.79	—	7727	505	1	0	0	0	3939	logfile

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