Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PEK	20327	2024-09-25	2019-06-20	4.2	4.25	—	4.2	0.005	0.73	0.0	0.03	13.79	0.00	1.913	4.42	0.00	0.8	99.2	0.0	-2.47	0.70	0.74	—	4.2	0.003	0.77	0.0	0.04	14.75	0.00	1.309	10.27	0.08	1.9	98.1	0.0	0.06	0.92	0.71	0.76	—	11106	1405	11	0	13	0	0	logfile
✔	6LN8	0927	2024-09-24	2019-12-28	3.1	3.26	3.33	3.3	0.003	0.56	0.0	0.04	12.81	0.00	2.051	6.74	0.00	3.0	97.0	0.0	-2.71	0.70	0.80	2.37	3.3	0.002	0.54	0.0	0.04	15.27	0.00	1.313	7.51	2.11	2.6	97.4	0.0	0.46	0.46	0.68	0.82	1.83	7739	1003	2	0	2	0	0	logfile
✔	9GD3	51247	2024-09-28	2024-08-04	3.0	3.49	2.92	3.1	0.005	0.85	0.0	0.06	24.31	0.01	2.176	1.23	0.07	2.2	97.8	0.0	-0.07	0.78	0.74	3.10	3.1	0.003	0.67	0.0	0.04	24.17	0.00	1.316	6.64	1.13	2.1	97.9	0.0	1.99	1.09	0.86	0.89	2.60	19030	1630	13	284	3	0	0	logfile
✔	8SHo	40490	2024-09-28	2023-04-14	3.0	3.47	3.07	3.3	0.006	0.57	0.0	0.04	14.70	0.00	1.924	7.41	0.01	3.8	96.2	0.0	1.54	0.83	0.88	2.71	3.3	0.003	0.59	0.0	0.04	15.82	0.00	1.320	6.48	0.79	3.7	96.3	0.0	1.55	1.52	0.83	0.89	2.46	67725	8791	50	0	48	19	0	logfile
✔	9EUY	19989	2024-09-24	2024-03-28	2.95	3.23	3.00	3.3	0.003	0.74	0.0	0.05	11.99	0.01	2.311	3.09	0.24	1.8	98.2	0.0	0.41	0.69	0.83	3.53	3.3	0.003	0.93	0.0	0.04	16.08	0.00	1.321	6.69	2.27	1.6	98.4	0.0	1.77	0.65	0.67	0.83	2.64	7846	984	4	0	2	0	0	logfile
✔	8iWS	35778	2024-09-24	2023-03-31	3.42	3.63	3.46	3.7	0.003	0.65	2.0	0.04	16.82	0.00	1.757	7.59	0.92	4.4	95.6	0.0	2.06	0.67	0.75	1.15	3.6	0.003	0.68	0.0	0.04	17.78	0.00	1.326	9.25	3.14	4.8	95.2	0.0	1.07	0.67	0.71	0.84	1.85	6809	890	2	0	3	0	0	logfile
✔	8SFF	40440	2024-09-27	2023-04-11	3.2	3.48	3.08	3.3	0.004	0.55	0.0	0.04	14.50	0.00	1.599	7.13	0.00	3.2	96.8	0.0	1.72	0.84	0.89	2.47	3.3	0.002	0.54	0.0	0.04	15.54	0.00	1.327	6.15	0.62	3.0	97.0	0.0	1.91	0.26	0.83	0.89	2.21	66750	8667	49	0	48	19	0	logfile
✔	8D9D	27258	2024-09-28	2022-06-09	3.59	4.41	3.63	3.9	0.003	0.66	0.0	0.04	15.76	0.01	2.101	7.58	0.19	3.6	96.2	0.3	0.16	0.87	0.79	1.53	4.0	0.003	0.60	0.0	0.04	16.71	0.00	1.334	6.65	0.72	3.3	96.5	0.2	0.96	1.71	0.91	0.85	1.25	19409	2312	10	30	8	0	0	logfile
✔	7N70	24214	2024-09-24	2021-06-09	2.8	3.43	2.92	3.3	0.005	0.73	0.0	0.05	13.22	0.01	2.109	7.93	0.00	1.6	98.4	0.0	0.27	0.74	0.85	2.88	3.3	0.003	0.57	0.0	0.04	14.88	0.00	1.346	5.82	1.27	1.9	98.1	0.0	1.73	0.44	0.63	0.77	2.16	7953	1032	2	0	4	0	0	logfile
✔	8TZo	41764	2024-09-25	2023-08-27	3.1	3.45	3.14	3.4	0.004	0.70	0.0	0.04	17.02	0.00	2.252	5.32	0.22	3.1	96.9	0.0	0.82	0.62	0.85	2.93	3.4	0.004	0.57	0.0	0.04	15.35	0.00	1.353	4.80	1.83	3.6	96.4	0.0	1.01	0.29	0.61	0.85	2.73	8737	1070	7	0	10	0	0	logfile
✔	6oo2	20142	2024-09-27	2019-04-22	4.4	4.52	—	3.5	0.007	1.14	1.0	0.07	13.96	0.01	2.037	7.03	0.00	7.1	92.3	0.6	-3.55	0.75	0.61	—	2.5	0.003	0.72	0.0	0.04	13.25	0.00	1.355	10.66	0.00	5.0	95.0	0.0	1.50	1.03	0.86	0.80	—	16691	2436	25	0	19	0	0	logfile
✔	5MMJ	3532	2024-09-25	2016-12-10	3.6	3.88	—	3.6	0.008	1.15	0.0	0.05	23.41	0.01	1.774	10.61	7.28	4.9	94.8	0.3	-3.46	0.92	0.86	1.28	3.6	0.009	0.86	0.0	0.04	23.17	0.01	1.366	19.75	4.56	6.0	93.8	0.1	-0.77	1.59	0.92	0.86	1.13	55315	2806	31	1484	359	0	0	logfile
✔	7SP8	25368	2024-09-24	2021-11-02	2.7	2.98	—	2.9	0.008	0.77	0.0	0.05	14.94	0.00	2.204	5.45	0.16	1.5	98.5	0.0	2.53	0.72	0.82	2.37	2.9	0.004	1.04	0.0	0.04	16.78	0.00	1.371	7.68	2.37	1.5	98.5	0.0	1.63	0.59	0.75	0.88	3.58	6090	742	4	0	5	0	0	logfile
✔	7Y38	33591	2024-09-25	2022-06-10	2.8	3.48	2.94	3.3	0.010	0.72	0.0	0.04	15.47	0.00	2.113	3.70	0.04	3.8	96.2	0.1	-0.63	0.78	0.83	2.85	3.3	0.004	0.75	2.0	0.05	16.10	0.01	1.379	3.58	0.81	5.2	94.7	0.1	-0.22	0.36	0.79	0.87	2.45	53135	6704	27	3	36	0	0	logfile
✔	7oP8	13014	2024-09-24	2021-05-31	3.5	3.85	—	3.8	0.004	0.86	0.0	0.05	14.44	0.01	1.950	6.41	0.00	5.6	94.4	0.0	-1.73	0.66	0.77	1.18	3.8	0.004	0.67	0.0	0.04	16.20	0.00	1.381	9.78	2.87	6.6	93.4	0.0	-0.85	0.95	0.66	0.79	0.93	8872	1118	2	0	2	0	0	logfile
✔	7NVN	12607	2024-09-28	2021-03-15	3.0	3.12	2.93	3.1	0.004	0.62	0.0	0.04	14.51	0.00	1.909	8.75	1.66	3.2	96.7	0.1	-2.07	0.64	0.77	2.98	3.1	0.003	0.64	0.0	0.04	16.71	0.00	1.385	8.23	1.94	3.2	96.8	0.0	1.06	1.16	0.73	0.85	2.77	69139	8970	51	0	48	19	0	logfile
✔	9C4D	45182	2024-09-26	2024-06-04	4.17	4.62	4.15	4.3	0.002	0.48	0.0	0.03	22.14	0.00	2.085	9.43	2.34	0.7	99.3	0.0	4.02	0.82	0.73	—	4.3	0.003	0.59	0.0	0.04	22.97	0.00	1.390	10.74	0.00	1.4	98.6	0.0	2.57	1.89	0.83	0.77	—	12493	1120	18	154	16	0	0	logfile
✔	7YLY	33921	2024-09-28	2022-07-27	3.05	3.00	3.12	3.3	0.006	0.86	11.0	0.05	10.60	0.00	1.830	2.42	0.72	3.9	96.0	0.1	-3.86	0.76	0.74	1.11	3.3	0.004	0.83	0.0	0.04	16.56	0.00	1.399	10.87	3.84	4.4	95.6	0.1	0.14	1.67	0.82	0.84	1.10	68656	8884	48	0	46	14	0	logfile
✔	8SHE	40485	2024-09-27	2023-04-13	2.8	3.49	2.89	3.2	0.005	0.56	0.0	0.04	14.08	0.00	1.875	6.81	0.00	3.6	96.4	0.0	1.64	0.86	0.89	2.88	3.2	0.005	0.62	0.0	0.04	15.31	0.00	1.401	5.83	0.91	3.5	96.5	0.0	1.73	0.25	0.84	0.88	2.61	66179	8601	49	0	48	19	0	logfile
✔	6XMU	22264	2024-09-24	2020-06-30	3.3	3.92	3.36	3.6	0.004	0.58	0.0	0.04	11.80	0.00	1.956	6.47	0.00	4.3	95.7	0.0	-2.43	0.72	0.83	2.22	3.7	0.003	0.58	0.0	0.04	13.78	0.00	1.415	4.37	1.37	3.7	96.3	0.0	0.57	0.40	0.72	0.86	1.60	8411	1090	3	0	22	0	0	logfile

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