Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XQ4	38565	2024-09-24	2024-01-04	3.21	2.33	3.21	3.1	0.003	0.74	0.0	0.05	12.52	0.01	2.267	3.69	3.90	4.0	96.0	0.0	-1.41	0.70	0.77	1.54	3.0	0.004	0.67	0.0	0.04	16.05	0.00	2.456	7.68	2.90	4.4	95.6	0.0	1.34	1.64	0.71	0.78	1.65	8237	1044	1	0	0	0	0	logfile
✔	8GLU	40218	2024-09-26	2023-03-23	3.57	3.90	3.54	3.8	0.003	0.56	0.0	0.04	15.70	0.00	2.053	7.60	0.00	4.7	95.3	0.0	-0.89	0.70	0.75	1.26	3.8	0.005	0.67	0.0	0.04	17.00	0.00	1.891	7.89	1.90	6.2	93.8	0.0	-0.80	0.46	0.71	0.77	1.38	12338	1533	8	0	7	0	0	logfile
✔	8K21	36824	2024-09-26	2023-07-12	3.8	4.29	3.74	3.8	0.009	1.29	1.0	0.08	22.88	0.01	2.232	7.29	8.12	6.9	92.5	0.6	-3.31	0.78	0.78	1.46	3.7	0.003	0.80	0.0	0.04	20.60	0.00	2.483	15.57	1.94	4.9	95.0	0.2	-0.18	1.78	0.80	0.85	1.89	11389	1330	8	42	0	0	0	logfile
✔	8K27	36830	2024-09-28	2023-07-12	3.6	3.70	—	3.6	0.006	1.15	2.0	0.07	21.74	0.01	1.649	5.73	11.13	7.3	92.2	0.5	-3.25	0.83	0.84	2.87	3.6	0.005	0.66	0.0	0.04	20.26	0.00	2.413	5.88	2.60	6.3	93.5	0.1	-1.19	1.25	0.85	0.86	2.97	21183	2396	12	134	0	0	0	logfile
✔	9B5C	44207	2024-09-25	2024-03-22	2.5	3.00	2.51	2.8	0.003	0.48	0.0	0.04	10.21	0.00	2.036	1.37	0.66	1.7	98.3	0.0	1.33	0.70	0.80	4.37	2.8	0.003	0.49	0.0	0.04	13.42	0.00	2.027	3.06	1.32	1.2	98.8	0.0	1.70	0.26	0.72	0.82	3.53	9536	1209	6	0	4	0	0	logfile
✔	8RK4	19259	2024-09-24	2023-12-23	4.74	6.78	6.17	3.7	0.003	0.72	0.0	0.05	11.12	0.00	0.920	21.20	0.00	4.0	95.7	0.3	-1.38	0.94	0.75	—	3.8	0.002	0.65	0.0	0.04	11.91	0.00	2.570	9.10	0.00	4.0	95.7	0.3	-0.96	0.95	0.94	0.72	—	8373	1119	3	0	0	0	0	logfile
✔	8XVE	38702	2024-09-24	2024-01-15	3.0	2.32	3.07	2.1	0.004	0.63	0.0	0.04	16.63	0.01	2.050	7.99	0.65	2.0	98.0	0.0	0.79	0.77	0.78	2.64	2.1	0.004	0.66	0.0	0.04	17.68	0.00	2.446	6.40	4.73	2.6	97.4	0.0	1.06	0.43	0.77	0.79	2.17	8524	1078	6	0	0	0	0	logfile
✔	9B68	44249	2024-09-28	2024-03-23	3.6	3.60	3.54	3.6	0.003	0.61	0.0	0.04	16.03	0.00	2.203	6.44	0.27	2.9	97.1	0.0	-0.07	0.73	0.82	3.47	3.6	0.002	0.55	0.0	0.04	15.21	0.00	2.448	5.02	2.31	2.8	97.2	0.0	0.46	0.40	0.74	0.83	3.03	11364	1496	9	0	11	0	0	logfile
✔	8XKi	38418	2024-09-30	2023-12-23	3.2	3.40	3.22	3.4	0.004	0.58	0.0	0.05	19.04	0.00	2.156	6.18	0.30	5.8	94.1	0.1	-2.04	0.75	0.82	2.39	3.3	0.004	0.72	1.0	0.05	16.88	0.00	1.931	4.40	3.05	4.7	95.2	0.1	-1.15	1.02	0.77	0.88	2.20	24431	3121	13	0	32	0	0	logfile
✔	9Eo4	19845	2024-09-24	2024-03-14	2.66	2.89	2.68	3.0	0.006	0.72	0.0	0.04	15.98	0.02	1.915	5.57	0.87	1.8	98.2	0.0	1.45	0.49	0.83	4.04	3.0	0.003	0.49	0.0	0.04	14.95	0.00	2.079	4.68	0.66	0.7	99.3	0.0	1.55	0.82	0.56	0.87	4.55	8781	546	2	0	7	4	4322	logfile
✔	8V0X	42873	2024-09-30	2023-11-17	3.3	3.51	3.34	3.5	0.004	0.79	0.0	0.05	14.55	0.01	2.304	3.00	0.00	5.8	94.2	0.0	-1.76	0.67	0.77	2.58	3.5	0.003	0.57	0.0	0.04	15.39	0.00	2.485	5.08	1.55	3.7	96.3	0.0	-0.43	0.40	0.70	0.82	2.41	24796	3123	6	0	29	0	0	logfile
✔	8WTW	37844	2024-09-23	2023-10-19	2.8	2.97	2.89	3.0	0.003	0.48	0.0	0.04	16.20	0.00	2.289	3.87	0.21	2.3	97.7	0.0	-1.28	0.64	0.89	2.80	3.0	0.002	0.48	0.0	0.04	16.90	0.00	2.297	2.10	1.68	2.0	98.0	0.0	1.84	0.36	0.61	0.87	2.15	4531	565	5	0	4	0	0	logfile
✔	8YW5	39623	2024-09-24	2024-03-29	2.84	3.09	2.86	3.1	0.003	0.50	0.0	0.04	11.96	0.00	2.064	4.62	3.79	4.6	95.4	0.0	-0.41	0.61	0.80	3.98	3.1	0.003	0.58	0.0	0.04	14.97	0.00	2.532	4.16	2.93	4.5	95.5	0.0	1.36	0.32	0.61	0.81	3.29	8937	1157	6	0	0	0	0	logfile
✔	9ASQ	43823	2024-09-26	2024-02-26	3.0	3.78	3.05	3.3	0.003	0.48	0.0	0.04	18.28	0.00	2.248	4.84	0.18	2.7	97.3	0.0	1.81	0.75	0.62	2.49	3.3	0.003	0.58	0.0	0.04	18.07	0.00	2.347	4.03	0.71	2.8	97.2	0.0	1.86	0.37	0.83	0.88	2.34	12359	1257	7	100	4	2	0	logfile
✔	9ARH	43782	2024-09-29	2024-02-23	3.69	4.00	3.71	4.0	0.013	1.58	74.0	0.11	12.97	0.01	1.335	19.19	8.98	7.4	92.3	0.4	-3.17	0.70	0.73	1.23	4.0	0.003	0.70	0.0	0.04	14.49	0.00	2.444	7.29	4.54	8.0	92.0	0.1	-0.90	1.62	0.69	0.73	1.10	22792	3182	10	0	6	0	0	logfile
✔	8V0P	42864	2024-09-30	2023-11-17	3.3	3.60	3.41	3.6	0.005	0.79	0.0	0.06	14.49	0.01	2.294	3.21	0.00	5.0	95.0	0.0	-1.57	0.70	0.78	2.54	3.6	0.002	0.54	0.0	0.04	15.16	0.00	2.422	4.69	1.44	4.3	95.7	0.0	-0.10	0.37	0.73	0.83	2.12	24925	3111	15	0	47	0	0	logfile
✔	9B5E	44209	2024-09-25	2024-03-22	2.81	3.27	2.83	3.1	0.003	0.44	0.0	0.04	9.40	0.00	2.037	1.39	1.15	1.7	98.3	0.0	1.33	0.67	0.74	3.55	3.1	0.004	0.53	0.0	0.04	13.17	0.00	2.000	2.62	2.21	1.6	98.4	0.0	1.57	1.55	0.76	0.85	3.37	10128	1283	6	0	4	0	0	logfile
✔	8TQ1	41498	2024-09-28	2023-08-06	3.3	3.50	3.26	3.4	0.007	1.17	0.0	0.06	13.27	0.01	2.108	1.39	0.24	3.5	96.5	0.0	0.88	0.79	0.86	3.93	3.4	0.003	0.62	0.0	0.04	13.41	0.00	2.501	5.31	1.63	3.3	96.7	0.0	0.63	0.51	0.80	0.88	3.69	19788	2400	31	0	79	0	0	logfile
✔	8TZY	41774	2024-09-26	2023-08-28	3.8	4.10	3.75	4.0	0.003	0.60	0.0	0.05	15.91	0.00	1.931	8.90	0.41	12.0	88.0	0.0	-2.74	0.68	0.67	1.13	4.0	0.005	0.98	0.0	0.05	16.31	0.00	2.328	8.32	3.79	13.4	86.4	0.2	-3.01	1.17	0.68	0.67	1.11	13718	978	5	0	0	0	6598	logfile
✔	8QT7	18645	2024-09-23	2023-10-12	2.2	2.42	2.27	2.4	0.009	0.96	0.0	0.04	19.30	0.00	2.169	4.96	0.86	1.8	98.2	0.0	1.00	0.61	0.80	4.04	2.4	0.003	0.61	0.0	0.04	19.31	0.00	2.498	3.79	0.86	1.8	98.2	0.0	1.70	3.68	0.60	0.79	3.77	3516	399	2	0	4	65	0	logfile

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