Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iSS	35694	2024-09-24	2023-03-21	3.19	3.41	3.22	3.5	0.003	0.51	0.0	0.04	20.03	0.00	2.026	15.69	0.39	6.0	94.0	0.0	-1.16	0.64	0.77	2.33	3.5	0.003	0.56	0.0	0.04	20.24	0.00	2.053	8.32	2.75	4.9	95.1	0.0	0.15	0.41	0.64	0.76	1.73	8807	889	6	80	1	0	0	logfile
✔	8ATW	15665	2024-09-25	2022-08-24	3.62	3.49	3.71	3.7	0.005	0.74	0.0	0.05	18.13	0.00	2.199	8.51	0.00	2.8	97.2	0.0	1.06	0.72	0.79	1.90	3.6	0.006	0.67	0.0	0.04	19.77	0.00	1.506	9.33	2.89	3.9	96.1	0.0	0.46	0.39	0.72	0.81	2.00	11283	1258	6	61	1	0	0	logfile
✔	8HH8	34755	2024-09-30	2022-11-16	2.8	3.21	2.83	3.0	0.003	0.56	0.0	0.04	14.03	0.00	1.983	3.76	0.08	2.2	97.8	0.0	1.14	0.84	0.90	3.75	3.0	0.004	0.55	0.0	0.04	15.45	0.00	1.917	3.55	0.70	2.7	97.3	0.0	1.10	0.85	0.86	0.93	3.41	24250	3129	13	0	12	0	0	logfile
✔	8Q7Y	18244	2024-09-25	2023-08-17	2.6	2.67	2.58	2.6	0.003	0.69	0.0	0.04	19.41	0.00	2.081	13.77	3.87	5.6	94.4	0.0	-1.10	0.64	0.77	3.25	2.6	0.006	0.82	0.0	0.05	18.91	0.01	2.531	10.91	7.36	8.2	91.8	0.0	-1.20	0.44	0.66	0.83	3.12	10032	1212	4	0	0	0	0	logfile
✔	8P62	17458	2024-09-24	2023-05-25	3.9	3.96	3.95	3.6	0.002	0.54	0.0	0.04	14.34	0.00	1.945	7.04	0.00	4.1	95.8	0.0	0.16	0.84	0.77	0.94	3.6	0.003	0.61	0.0	0.04	15.98	0.00	1.967	6.78	1.11	4.6	95.3	0.0	0.29	0.41	0.85	0.78	0.99	53042	6631	21	9	16	0	0	logfile
✔	7X3X	32996	2024-09-26	2022-03-01	3.2	3.69	—	3.2	0.012	0.98	0.0	0.06	27.92	0.01	1.947	10.45	0.16	0.9	99.1	0.0	2.89	0.81	0.65	2.39	3.2	0.003	0.58	0.0	0.03	27.69	0.00	2.506	6.98	0.32	1.5	98.5	0.0	3.44	1.75	0.89	0.87	2.17	12036	769	11	292	0	0	0	logfile
✔	8AZ5	15754	2024-09-23	2022-09-05	2.3	2.46	2.29	2.4	0.005	0.66	0.0	0.06	11.45	0.00	2.485	10.18	0.00	1.6	98.4	0.0	-2.90	0.56	0.89	6.92	2.4	0.004	0.58	0.0	0.05	12.20	0.00	2.104	3.94	0.23	2.6	97.4	0.0	-2.91	0.51	0.58	0.91	7.36	4060	540	53	0	20	20	0	logfile
✔	8JX7	36691	2024-09-25	2023-06-30	3.6	4.97	3.68	4.2	0.003	0.65	0.0	0.04	17.21	0.00	2.057	8.94	0.00	2.3	97.7	0.0	0.20	0.63	0.77	0.93	4.2	0.003	0.91	0.0	0.05	16.87	0.00	2.423	12.72	1.99	1.6	98.4	0.0	0.51	1.69	0.63	0.84	0.97	11237	1416	1	0	0	0	0	logfile
✔	8PD2	17598	2024-09-24	2023-06-11	3.25	2.29	3.19	2.1	0.004	0.52	0.0	0.04	12.99	0.00	2.322	3.02	0.00	1.4	98.6	0.0	0.72	0.62	0.78	3.03	2.1	0.003	0.54	0.0	0.04	15.94	0.00	2.499	4.86	2.22	1.2	98.8	0.0	2.74	0.97	0.68	0.82	2.35	8270	1047	1	0	0	0	0	logfile
✔	8XCV	38256	2024-09-23	2023-12-10	2.83	3.05	—	3.0	0.007	0.80	0.0	0.05	16.46	0.01	2.441	4.86	2.95	1.5	98.5	0.0	1.22	0.48	0.89	4.82	3.0	0.002	0.49	0.0	0.04	15.89	0.00	2.544	5.62	0.59	2.2	97.8	0.0	1.78	0.85	0.48	0.91	4.40	3310	415	2	0	1	7	0	logfile
✔	8UHF	42279	2024-09-26	2023-10-09	3.8	3.77	—	1.7	0.002	0.49	0.0	0.04	12.21	0.00	2.126	10.07	0.00	3.0	97.0	0.0	-1.49	0.62	0.79	0.57	1.7	0.005	0.91	0.0	0.04	16.07	0.00	2.321	20.10	2.30	4.7	95.3	0.0	-0.33	1.24	0.63	0.81	0.65	12411	1739	9	0	0	0	0	logfile
✔	9GD0	51238	2024-09-28	2024-08-04	2.8	3.26	—	3.0	0.006	0.84	0.0	0.05	27.26	0.01	2.229	4.41	0.00	0.5	99.5	0.0	-0.62	0.86	0.82	3.22	3.0	0.004	0.65	0.0	0.03	28.08	0.00	2.268	7.19	2.19	1.7	98.3	0.0	2.43	1.33	0.88	0.86	2.27	20207	1253	16	500	0	0	0	logfile
✔	8C1Q	16380	2024-09-28	2022-12-21	2.82	2.61	2.76	2.8	0.010	1.40	1.0	0.08	16.04	0.01	2.171	4.38	2.54	2.7	97.3	0.0	-0.72	0.64	0.82	3.35	2.8	0.004	0.60	0.0	0.04	16.51	0.00	2.472	5.52	2.38	1.9	98.1	0.0	1.63	0.54	0.70	0.82	2.70	18462	2315	23	0	18	25	0	logfile
✔	8GN7	34156	2024-09-28	2022-08-23	3.0	3.00	2.79	3.0	0.003	0.70	0.0	0.04	18.24	0.01	2.001	2.57	8.33	2.7	97.3	0.0	-1.11	0.65	0.83	1.32	3.0	0.002	0.61	0.0	0.04	16.20	0.00	2.501	1.86	2.18	2.9	97.1	0.0	1.40	1.91	0.76	0.89	1.17	17530	2030	20	0	50	0	0	logfile
✔	8BWo	16292	2024-09-25	2022-12-07	3.2	3.36	3.15	3.4	0.005	1.11	0.0	0.05	13.92	0.01	1.900	2.44	0.47	4.2	95.8	0.0	-1.54	0.58	0.79	3.27	3.4	0.005	0.66	0.0	0.04	16.43	0.00	1.892	7.08	2.28	2.1	97.9	0.0	0.90	1.80	0.68	0.86	2.46	9712	1211	2	0	4	0	0	logfile
✔	7YUF	34105	2024-09-24	2022-08-17	3.29	3.54	3.31	3.7	0.006	0.80	0.0	0.05	12.37	0.01	2.232	1.74	0.00	3.8	96.2	0.0	-0.26	0.57	0.73	2.51	3.6	0.003	0.61	0.0	0.04	14.84	0.00	2.439	4.79	2.64	3.6	96.4	0.0	1.18	0.61	0.61	0.78	1.08	8415	1105	5	0	0	0	0	logfile
✔	8C8L	16483	2024-09-26	2023-01-20	2.71	2.35	2.64	2.7	0.014	1.59	24.0	0.08	13.76	0.01	1.144	8.21	0.76	4.1	95.9	0.0	-1.13	0.59	0.81	4.21	2.6	0.004	0.64	0.0	0.05	15.96	0.00	2.473	4.29	2.67	2.9	97.1	0.0	-0.56	1.60	0.63	0.84	4.34	59076	7962	6	0	0	0	0	logfile
✔	8QCT	18335	2024-09-23	2023-08-28	2.6	2.36	2.57	2.6	0.003	0.49	0.0	0.04	15.84	0.00	2.202	7.25	0.00	1.9	98.1	0.0	0.55	0.69	0.84	3.34	2.6	0.003	0.56	0.0	0.04	16.12	0.00	2.419	6.49	2.26	2.6	97.4	0.0	2.41	0.27	0.68	0.83	2.90	3259	418	2	0	1	0	0	logfile
✔	8K37	36846	2024-09-28	2023-07-14	3.5	3.55	3.46	3.6	0.006	0.69	4.0	0.05	13.20	0.00	2.224	5.93	0.41	2.4	97.6	0.0	-0.80	0.70	0.85	2.95	3.5	0.004	0.62	0.0	0.05	15.50	0.00	2.483	4.57	4.40	2.1	97.9	0.0	-0.66	0.54	0.70	0.86	2.43	18528	2394	18	0	0	0	0	logfile
✔	8VYM	43667	2024-09-28	2024-02-09	3.4	3.70	3.67	3.7	0.002	0.44	0.0	0.04	11.25	0.00	2.230	6.31	0.66	3.8	96.1	0.0	-0.34	0.75	0.87	2.98	3.7	0.003	0.58	0.0	0.04	13.87	0.00	2.453	6.73	1.99	4.2	95.8	0.0	0.28	1.05	0.74	0.87	2.76	18289	2218	30	0	45	0	0	logfile

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