Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JG9	22315	2024-09-28	2020-07-18	3.4	2.37	3.49	3.4	0.009	1.56	0.0	0.20	9.66	0.01	2.424	0.51	0.00	2.9	96.8	0.3	-1.25	0.61	0.54	—	2.3	0.006	1.10	0.0	0.10	8.50	0.01	2.480	1.02	0.00	15.6	84.3	0.1	-1.84	1.32	0.72	0.71	—	19569	4826	26	0	7	0	0	logfile
✔	7MQR	23950	2024-09-27	2021-05-06	4.1	4.43	4.11	4.2	0.007	1.32	0.0	0.07	15.73	0.01	2.382	3.72	0.60	9.7	89.9	0.3	-3.42	0.85	0.80	—	4.2	0.003	0.66	0.0	0.05	13.94	0.00	2.429	8.88	0.00	7.0	92.8	0.2	-1.18	0.49	0.85	0.82	—	14878	1810	12	0	20	0	0	logfile
✔	5A6E	3062	2024-09-26	2015-06-25	4.5	6.76	—	5.1	0.010	3.73	0.0	0.05	15.55	0.01	2.112	8.77	3.19	11.1	88.8	0.2	-5.00	0.36	0.56	—	4.8	0.002	0.56	0.0	0.03	10.40	0.00	2.249	6.20	0.00	5.1	94.9	0.0	-0.28	1.44	0.38	0.66	—	11093	634	4	0	182	0	5102	logfile
✔	7KTU	23030	2024-09-24	2020-11-24	4.15	4.49	—	4.2	0.006	1.05	0.0	0.05	12.61	0.01	2.259	12.91	0.37	4.3	95.7	0.0	-5.35	0.81	0.79	—	4.2	0.003	0.75	0.0	0.04	13.22	0.00	2.319	14.02	0.00	2.9	97.1	0.0	-0.05	0.89	0.80	0.76	—	7577	995	1	0	0	0	0	logfile
✔	6D83	7453	2024-09-27	2018-04-25	4.27	4.38	—	4.3	0.005	0.92	0.0	0.05	11.34	0.01	1.904	6.11	0.05	5.0	94.9	0.0	-4.30	0.80	0.76	—	4.3	0.003	0.74	0.0	0.04	13.96	0.00	2.004	13.80	0.00	4.4	95.6	0.0	-0.68	1.04	0.81	0.77	—	16588	2063	10	0	4	0	0	logfile
✔	7L0P	23099	2024-09-24	2020-12-12	4.1	3.94	3.91	4.0	0.006	1.06	1.0	0.06	15.23	0.01	2.231	8.45	0.53	6.8	92.9	0.3	-3.81	0.56	0.72	—	4.0	0.003	0.74	0.0	0.05	14.26	0.00	2.417	14.16	0.00	5.3	94.6	0.1	-0.74	1.04	0.60	0.74	—	6953	888	5	0	0	0	0	logfile
✔	7MQS	23951	2024-09-26	2021-05-06	4.4	4.79	4.46	4.4	0.015	1.73	7.0	0.10	15.00	0.01	2.416	3.33	0.00	9.6	89.8	0.6	-3.94	0.83	0.76	—	4.4	0.003	0.75	0.0	0.05	13.93	0.00	2.363	13.07	0.00	8.9	90.7	0.4	-1.78	0.63	0.84	0.78	—	14028	1739	8	0	0	0	0	logfile
✔	8HC6	34653	2024-09-24	2022-11-01	4.69	5.06	4.63	4.8	0.003	0.57	0.0	0.05	13.45	0.00	2.296	4.88	0.12	4.6	95.4	0.0	-0.78	0.80	0.70	—	4.8	0.003	0.64	0.0	0.04	13.05	0.00	2.493	13.46	0.00	7.1	92.9	0.0	-1.54	0.76	0.82	0.75	—	7377	933	6	0	7	0	0	logfile
✔	7Fii	31598	2024-09-25	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.66	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	4.1	0.003	0.60	0.0	0.04	9.55	0.00	2.607	4.77	0.00	3.2	96.8	0.0	0.73	0.72	0.66	0.75	—	8765	1522	6	0	0	0	0	logfile
✔	6BPQ	7127	2024-09-29	2017-11-25	4.1	4.26	4.18	4.2	0.007	0.92	0.0	0.05	9.82	0.01	2.338	4.30	0.00	3.9	96.1	0.0	-3.28	0.68	0.78	—	4.2	0.004	0.61	0.0	0.04	11.65	0.00	2.592	6.62	0.00	4.7	95.3	0.0	1.30	0.60	0.68	0.78	—	22404	3072	16	0	268	0	0	logfile
✔	6SH5	10194	2024-09-26	2019-08-05	4.6	4.70	—	4.5	0.005	0.97	0.0	0.05	5.65	0.01	2.474	2.35	0.00	9.0	91.0	0.0	-3.63	0.80	0.76	—	4.5	0.003	0.76	0.0	0.04	4.58	0.00	2.594	2.53	0.00	9.0	91.0	0.0	-2.95	1.62	0.82	0.82	—	11529	2338	7	0	0	0	0	logfile
✔	8HD7	34671	2024-09-24	2022-11-03	3.52	3.99	3.58	3.3	0.003	0.60	0.0	0.03	23.66	0.00	1.927	2.96	0.00	0.0	0.0	0.0	—	0.89	0.77	—	3.3	0.006	0.74	0.0	0.04	23.90	0.01	1.822	12.81	0.00	0.0	0.0	0.0	—	1.70	0.91	0.84	—	8983	0	2	419	28	0	0	logfile
✔	8DL0	27494	2024-09-28	2022-07-06	4.1	4.31	4.17	4.1	0.003	0.67	0.0	0.05	13.22	0.00	2.168	13.34	0.00	4.1	95.9	0.0	0.25	0.73	0.75	—	4.1	0.003	0.64	0.0	0.04	13.58	0.00	2.331	10.95	0.00	4.0	96.0	0.0	0.14	1.19	0.73	0.76	—	10377	1268	4	0	0	0	0	logfile
✔	7BTR	30183	2024-09-27	2020-04-02	4.54	4.80	—	4.5	0.007	1.23	0.0	0.06	12.09	0.01	2.037	10.84	0.99	14.4	85.6	0.0	-4.59	0.88	0.78	—	4.5	0.003	0.82	0.0	0.05	12.86	0.00	2.365	16.87	0.00	12.1	87.9	0.0	-2.49	1.73	0.89	0.80	—	16737	2087	6	0	0	0	0	logfile
✔	6UW9	20920	2024-09-28	2019-11-04	4.33	4.42	—	4.3	0.005	1.14	0.0	0.06	15.43	0.01	1.932	8.33	0.20	7.3	92.7	0.0	-4.94	0.67	0.79	—	4.3	0.005	0.81	0.0	0.04	14.88	0.00	2.385	9.75	0.00	7.5	92.5	0.0	-0.78	0.72	0.67	0.80	—	18924	2328	4	0	0	0	0	logfile
✔	6S3S	10096	2024-09-26	2019-06-25	4.1	4.29	3.71	4.1	0.007	0.87	0.0	0.05	14.29	0.01	2.141	18.71	0.07	7.8	91.9	0.4	-3.54	0.74	0.83	—	4.1	0.004	0.89	0.0	0.05	14.15	0.00	2.359	15.99	0.00	5.2	94.7	0.1	0.34	0.88	0.74	0.82	—	12321	1569	10	0	0	0	0	logfile
✔	6oo5	20146	2024-09-28	2019-04-22	4.2	4.30	4.10	4.2	0.012	1.05	0.0	0.06	10.64	0.01	2.246	3.18	0.00	4.5	95.5	0.0	-2.74	0.65	0.68	—	4.2	0.002	0.63	0.0	0.04	11.61	0.00	2.535	5.67	0.00	3.4	96.6	0.0	1.95	0.66	0.72	0.78	—	17548	2440	8	0	4	0	0	logfile
✔	7P4i	13193	2024-09-25	2021-07-11	4.2	5.62	—	4.1	0.003	0.76	0.0	0.04	13.10	0.00	2.168	11.83	0.00	5.7	94.3	0.0	-0.54	0.61	0.84	—	4.2	0.003	0.73	0.0	0.04	13.59	0.00	2.488	10.40	0.00	5.5	94.5	0.0	0.57	0.93	0.61	0.86	—	9510	1284	3	0	0	0	0	logfile
✔	6MZC	9298	2024-09-29	2018-11-05	4.5	4.36	4.48	4.3	0.010	1.33	1.0	0.07	10.66	0.01	2.207	12.14	0.72	14.4	85.4	0.2	-4.52	0.75	0.74	—	4.3	0.004	0.88	0.0	0.05	12.64	0.01	2.399	17.64	0.00	11.6	88.3	0.0	-1.82	1.06	0.74	0.73	—	21254	2493	14	0	346	0	0	logfile
✔	8G0D	29654	2024-09-28	2023-01-31	2.9	3.84	3.02	2.9	0.006	0.65	0.0	0.21	9.52	0.00	1.844	0.67	0.00	2.6	97.3	0.0	0.74	0.68	0.65	—	2.9	0.004	0.71	0.0	0.05	7.67	0.00	1.786	0.39	0.00	7.1	92.8	0.0	1.37	1.61	0.80	0.81	—	19874	4860	30	0	16	0	0	logfile

• ← previous
• Page 4 of 539
• next →