Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8J7P	36045	2024-09-23	2023-04-27	3.4	3.38	2.86	3.4	0.009	0.81	0.0	0.06	12.54	0.00	2.025	16.13	0.00	15.0	85.0	0.0	-5.75	0.35	0.87	6.32	3.5	0.003	0.65	0.0	0.05	15.35	0.00	2.534	7.68	2.38	8.5	91.5	0.0	-4.93	0.51	0.33	0.87	5.60	3258	405	3	0	0	0	0	logfile
✔	8AZ6	15755	2024-09-23	2022-09-05	3.1	3.15	3.07	3.1	0.004	0.43	0.0	0.04	9.46	0.00	2.212	5.45	0.00	4.8	95.2	0.0	-4.04	0.50	0.84	6.14	3.1	0.006	0.63	0.0	0.04	14.10	0.00	2.223	2.58	4.74	5.7	94.3	0.0	-4.92	0.78	0.51	0.87	6.66	3420	460	40	0	20	0	0	logfile
✔	8CGH	16643	2024-09-23	2023-02-04	2.68	2.73	2.52	2.7	0.011	1.54	0.0	0.08	16.67	0.01	2.629	3.30	0.00	5.1	92.3	2.6	-5.57	0.54	0.94	7.81	2.7	0.004	0.86	0.0	0.04	17.20	0.00	2.640	0.97	0.80	6.4	93.6	0.0	-4.90	0.93	0.53	0.93	6.66	2710	400	5	0	0	0	0	logfile
✔	7KXY	23067	2024-09-25	2020-12-05	4.4	4.55	4.44	4.5	0.004	0.82	0.0	0.05	15.13	0.01	2.197	19.28	7.18	26.0	69.8	4.2	-5.90	0.63	0.60	—	4.5	0.004	0.92	0.0	0.05	14.80	0.01	2.527	23.17	0.00	18.3	81.6	0.1	-4.90	1.26	0.64	0.62	—	9510	1181	2	0	0	0	0	logfile
✔	8A7Q	15224	2024-09-24	2022-06-21	2.8	3.63	2.72	3.4	0.004	0.67	0.0	0.05	11.64	0.00	2.197	7.83	0.00	3.2	96.8	0.0	-5.05	0.45	0.75	5.43	3.4	0.005	1.17	0.0	0.05	16.35	0.00	2.504	13.47	2.46	7.9	92.1	0.0	-4.89	4.62	0.41	0.75	3.27	6492	768	12	0	0	0	0	logfile
✔	8QXB	18717	2024-09-23	2023-10-24	3.86	3.89	3.45	4.3	0.014	2.28	0.0	0.11	18.19	0.01	2.508	1.77	0.00	2.3	97.7	0.0	-3.90	0.53	0.71	2.65	4.2	0.006	0.92	0.0	0.04	18.74	0.00	2.560	14.73	4.41	6.1	93.9	0.0	-4.89	3.44	0.54	0.78	2.55	5544	810	18	0	0	0	0	logfile
✔	6ZD0	11172	2024-09-24	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	3.7	0.003	0.77	0.0	0.04	5.49	0.00	2.602	5.29	0.00	15.7	84.1	0.2	-4.88	2.52	0.59	0.57	—	7962	1611	6	0	0	0	0	logfile
✔	6JSi	9882	2024-09-27	2019-04-08	4.7	4.70	—	4.6	0.007	1.48	0.0	0.06	15.33	0.01	2.231	10.68	2.42	23.2	72.3	4.5	-6.05	0.64	0.72	—	4.6	0.004	1.03	0.0	0.05	13.24	0.01	2.404	14.15	0.00	24.1	74.2	1.7	-4.86	0.63	0.63	0.70	—	62820	5844	15	0	4044	0	0	logfile
✔	7VQQ	32092	2024-09-23	2021-10-20	2.9	2.61	—	3.1	0.009	0.85	0.0	0.05	11.51	0.01	2.233	2.50	0.00	12.4	87.6	0.0	-6.09	0.47	0.86	4.62	3.1	0.004	0.71	0.0	0.04	12.43	0.00	2.570	1.11	2.28	3.4	96.6	0.0	-4.84	0.32	0.47	0.87	4.80	1968	273	3	0	0	0	0	logfile
✔	8CG3	16628	2024-09-23	2023-02-03	2.39	2.55	2.34	2.5	0.012	1.69	0.0	0.08	14.77	0.01	2.619	1.73	0.00	2.3	97.7	0.0	-4.90	0.52	0.96	8.23	2.5	0.005	0.94	0.0	0.04	16.12	0.00	2.645	0.17	0.00	2.3	97.7	0.0	-4.82	0.29	0.51	0.94	7.55	3040	445	5	0	0	0	0	logfile
✔	5G2X	3331	2024-09-28	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	21.03	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.007	1.06	0.0	0.05	25.06	0.01	1.903	37.36	5.67	23.3	75.6	1.1	-4.82	2.36	0.80	0.66	0.87	19072	487	3	704	0	0	0	logfile
✔	6SSX	10307	2024-09-23	2019-09-09	2.98	3.11	—	3.1	0.008	0.94	0.0	0.07	14.94	0.00	2.424	6.14	4.26	12.6	87.4	0.0	-4.73	0.65	0.82	4.81	3.0	0.006	0.74	0.0	0.06	16.88	0.00	2.503	10.46	4.68	11.2	88.8	0.0	-4.81	0.75	0.65	0.86	4.19	4900	730	10	0	0	0	0	logfile
✔	7Q67	13854	2024-09-23	2021-11-05	3.37	3.41	2.44	3.4	0.020	2.21	0.0	0.14	14.47	0.01	2.280	12.16	8.00	16.1	83.9	0.0	-4.98	0.51	0.71	2.52	3.5	0.005	0.99	0.0	0.05	19.12	0.00	2.468	19.94	12.36	18.2	81.8	0.0	-4.80	2.51	0.45	0.70	0.65	2618	363	11	0	0	0	0	logfile
✔	8D1B	27121	2024-09-24	2022-05-27	3.57	3.85	3.45	3.8	0.006	1.09	0.0	0.05	14.42	0.01	2.025	19.71	0.28	24.1	75.9	0.0	-6.32	0.76	0.81	2.61	3.8	0.005	0.89	0.0	0.04	16.57	0.01	2.435	10.30	2.08	18.4	81.6	0.0	-4.80	2.73	0.73	0.79	2.10	6724	874	4	0	0	0	0	logfile
✔	7V4B	31706	2024-09-23	2021-08-12	3.1	3.04	—	3.1	0.006	0.60	0.0	0.05	14.55	0.00	2.375	15.32	0.00	13.2	86.8	0.0	-5.99	0.41	0.69	2.66	3.1	0.006	0.71	0.0	0.05	17.49	0.00	2.542	9.78	6.25	14.3	85.7	0.0	-4.80	0.59	0.41	0.69	2.43	3336	480	6	0	0	0	0	logfile
✔	8QX9	18715	2024-09-23	2023-10-24	3.76	3.94	3.62	4.3	0.014	2.17	0.0	0.11	18.79	0.01	2.496	2.80	0.00	2.3	97.7	0.0	-4.75	0.50	0.70	3.13	4.3	0.004	0.93	0.0	0.04	19.90	0.00	2.530	16.78	2.59	3.5	96.5	0.0	-4.76	2.17	0.48	0.75	3.84	3696	540	12	0	0	0	0	logfile
✔	8CGG	16642	2024-09-23	2023-02-04	2.5	2.67	2.48	2.7	0.011	1.67	0.0	0.08	16.62	0.01	2.637	6.41	0.00	11.5	88.5	0.0	-5.62	0.55	0.94	8.29	2.7	0.002	0.67	0.0	0.04	16.97	0.00	2.666	1.75	0.00	3.1	96.9	0.0	-4.74	0.95	0.51	0.91	7.42	2710	400	5	0	0	0	0	logfile
✔	9FoF	50621	2024-09-23	2024-06-11	2.9	2.55	2.80	3.2	0.011	1.53	6.0	0.08	13.93	0.01	2.332	9.79	1.56	4.2	94.8	1.0	-4.04	0.27	0.57	3.42	2.8	0.006	1.03	0.0	0.05	17.52	0.00	2.580	2.89	2.60	7.6	92.4	0.0	-4.73	1.98	0.51	0.90	5.61	4176	600	12	0	0	0	0	logfile
✔	7V4C	31707	2024-09-23	2021-08-12	3.3	2.93	—	3.4	0.008	0.75	0.0	0.06	12.47	0.00	2.305	12.50	0.00	20.0	80.0	0.0	-6.54	0.40	0.83	2.37	3.4	0.004	0.63	0.0	0.05	17.46	0.00	2.582	4.55	9.09	9.4	90.6	0.0	-4.70	1.15	0.40	0.83	3.46	1287	186	3	0	0	0	0	logfile
✔	8ENQ	28276	2024-09-23	2022-09-30	3.6	3.97	3.73	4.4	0.004	0.77	0.0	0.05	13.93	0.00	2.257	14.40	0.00	0.3	99.7	0.0	1.45	0.35	0.32	1.15	4.2	0.006	1.14	0.0	0.05	16.41	0.00	2.473	28.61	4.42	19.0	81.0	0.0	-4.70	2.05	0.47	0.54	3.52	5593	777	7	0	0	0	0	logfile

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