Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oDJ	20021	2024-09-30	2019-03-26	3.5	3.75	—	3.7	0.009	1.50	0.0	0.07	11.32	0.01	2.438	2.03	0.00	0.0	0.0	0.0	—	0.81	0.81	—	3.7	0.012	1.74	0.0	0.07	8.02	0.00	2.306	2.41	0.00	0.0	0.0	0.0	—	0.61	0.82	0.83	—	25415	0	17	0	5083	0	0	logfile
✔	7SAM	24952	2024-09-23	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	23.50	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.89	0.0	0.04	28.04	0.01	1.982	71.15	0.00	0.0	0.0	0.0	—	5.48	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	8CZi	27098	2024-09-23	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.003	0.38	0.0	0.03	15.19	0.00	2.450	4.09	1.01	0.0	100.0	0.0	5.82	0.85	0.82	0.84	2.06	2550	339	6	0	0	0	0	logfile
✔	6YoV	10864	2024-09-26	2020-04-15	3.42	4.61	—	3.9	0.011	1.14	0.0	0.07	25.19	0.01	2.395	0.86	0.00	0.0	100.0	0.0	0.87	0.88	0.82	1.84	3.9	0.004	0.75	0.0	0.04	26.34	0.00	2.198	10.97	2.89	1.8	98.2	0.0	1.99	0.91	0.89	0.86	1.88	12298	898	18	262	8	0	0	logfile
✔	7XSL	33426	2024-09-26	2022-05-14	3.84	4.65	3.83	3.7	0.002	0.47	0.0	0.02	24.69	0.00	1.935	8.02	0.00	0.0	0.0	0.0	—	0.91	0.77	—	3.8	0.007	0.71	0.0	0.04	25.74	0.01	1.881	26.63	0.00	0.0	0.0	0.0	—	1.02	0.92	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7R6M	24282	2024-09-24	2021-06-22	3.68	3.27	—	3.4	0.006	0.94	0.0	0.04	25.58	0.01	2.005	4.72	0.00	0.0	0.0	0.0	—	0.53	0.72	—	3.4	0.007	0.87	0.0	0.04	25.53	0.01	1.758	13.47	0.00	0.0	0.0	0.0	—	0.17	0.55	0.73	—	7755	0	3	362	13	0	0	logfile
✔	7XSM	33427	2024-09-26	2022-05-14	4.01	4.70	4.03	4.0	0.002	0.47	0.0	0.03	24.50	0.00	1.969	7.06	0.00	0.0	0.0	0.0	—	0.90	0.75	—	4.0	0.007	0.78	0.0	0.04	26.36	0.01	1.865	41.31	0.00	0.0	0.0	0.0	—	1.71	0.92	0.82	—	12464	0	1	388	0	0	4165	logfile
✔	7R6L	24281	2024-09-24	2021-06-22	2.85	3.04	—	3.0	0.008	0.89	0.0	0.05	25.02	0.01	1.985	4.24	0.00	0.0	0.0	0.0	—	0.67	0.86	—	3.0	0.006	0.74	0.0	0.04	24.57	0.01	1.906	6.18	0.00	0.0	0.0	0.0	—	0.10	0.62	0.86	—	7857	0	3	366	20	0	0	logfile
✔	6ULC	20813	2024-09-28	2019-10-07	4.6	4.75	—	4.5	0.006	0.94	0.0	0.07	21.25	0.00	2.086	5.68	0.29	0.0	100.0	0.0	-4.46	0.79	0.67	—	4.5	0.004	0.96	0.0	0.06	13.65	0.00	2.134	17.46	0.05	11.9	88.1	0.0	-3.09	0.85	0.79	0.70	—	19968	2301	46	0	142	0	0	logfile
✔	8CL1	16709	2024-09-27	2023-02-16	3.35	3.67	2.87	3.6	0.008	0.93	0.0	0.06	12.18	0.01	0.393	14.11	0.54	0.0	99.1	0.9	-1.05	0.61	0.75	3.54	3.7	0.003	0.59	0.0	0.04	15.23	0.01	2.541	7.98	0.90	2.0	97.6	0.5	2.06	0.68	0.64	0.77	3.05	10494	1362	12	0	0	0	0	logfile
✔	6UET	20756	2024-09-23	2019-09-23	4.1	4.91	—	5.1	0.010	1.61	0.0	0.07	26.22	0.02	1.977	4.88	0.00	0.0	0.0	0.0	—	0.62	0.73	—	5.0	0.007	0.98	0.0	0.05	27.49	0.01	2.150	47.53	0.00	0.0	0.0	0.0	—	0.74	0.66	0.80	—	3869	0	2	119	1	0	1291	logfile
✔	7YGD	33816	2024-09-24	2022-07-11	3.41	4.13	3.42	3.3	0.002	0.49	0.0	0.03	24.63	0.00	2.100	14.25	0.00	0.0	0.0	0.0	—	0.90	0.81	—	3.3	0.007	0.78	0.0	0.04	25.43	0.01	1.825	28.90	0.00	0.0	0.0	0.0	—	2.07	0.91	0.89	—	8313	0	4	389	6	0	0	logfile
✔	8i7N	35223	2024-09-24	2023-02-01	2.98	3.12	2.92	3.0	0.006	0.66	0.0	0.04	23.30	0.00	1.982	2.00	0.00	0.0	0.0	0.0	—	0.82	0.83	—	3.0	0.003	0.53	0.0	0.03	23.01	0.00	1.950	4.52	0.00	0.0	0.0	0.0	—	0.91	0.87	0.91	—	8979	0	2	418	29	0	0	logfile
✔	7ZJ5	14741	2024-09-26	2022-04-08	4.55	5.91	5.09	4.4	0.002	0.65	0.0	0.04	23.36	0.00	2.256	0.50	0.00	0.0	0.0	0.0	—	0.92	0.85	—	4.5	0.008	0.84	0.0	0.04	25.94	0.01	1.845	54.52	0.00	0.0	0.0	0.0	—	3.94	0.93	0.85	—	12014	0	2	374	1	0	4030	logfile
✔	8QPZ	18570	2024-09-23	2023-10-03	2.5	2.74	2.49	2.9	0.004	0.70	0.0	0.05	10.84	0.00	2.495	9.26	8.57	0.0	100.0	0.0	-1.32	0.50	0.78	4.05	2.9	0.007	0.69	0.0	0.05	12.95	0.00	2.520	4.15	8.33	6.1	93.9	0.0	-2.53	0.43	0.53	0.81	4.63	4116	612	12	0	0	0	0	logfile
✔	6LHV	0900	2024-09-27	2019-12-10	4.59	4.86	—	4.4	0.010	1.38	0.0	0.05	5.37	0.00	1.654	9.63	0.00	0.0	0.0	0.0	—	0.70	0.59	—	4.4	0.010	1.33	0.0	0.04	6.42	0.00	2.267	12.16	0.00	0.0	0.0	0.0	—	3.57	0.84	0.81	—	8456	0	3	0	1707	0	0	logfile
✔	5G2Y	3332	2024-09-26	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	22.50	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.03	0.0	0.05	28.69	0.01	2.040	55.40	0.00	0.0	0.0	0.0	—	4.00	0.88	0.78	—	13494	0	1	630	0	0	0	logfile
✔	8HD6	34670	2024-09-24	2022-11-03	3.73	4.52	3.73	3.2	0.002	0.54	0.0	0.02	23.56	0.00	1.969	2.97	0.00	0.0	0.0	0.0	—	0.90	0.78	—	3.3	0.007	0.76	0.0	0.04	24.78	0.01	1.771	18.56	0.00	0.0	0.0	0.0	—	2.23	0.91	0.82	—	8980	0	2	419	25	0	0	logfile
✔	6LHW	0901	2024-09-26	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.6	0.008	1.28	0.0	0.04	6.20	0.00	2.244	9.56	0.00	0.0	0.0	0.0	—	2.92	0.85	0.76	—	7644	0	3	0	1541	0	0	logfile
✔	7JSV	22460	2024-09-29	2020-08-16	3.9	3.98	—	4.0	0.020	2.10	0.0	0.10	14.87	0.01	2.348	6.75	0.00	0.0	100.0	0.0	1.16	0.61	0.80	2.43	4.0	0.004	0.80	0.0	0.04	16.90	0.00	2.467	11.92	2.77	1.3	98.7	0.0	2.20	0.87	0.65	0.84	3.08	22140	2706	82	0	41	0	0	logfile

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