Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XYM	33522	2024-09-26	2022-06-01	3.3	3.70	3.42	3.6	0.009	1.58	6.0	0.07	14.87	0.01	1.028	29.59	0.49	25.5	71.6	2.9	-6.19	0.71	0.74	1.93	3.6	0.004	1.03	0.0	0.05	16.52	0.01	2.132	19.03	1.29	23.9	74.2	1.9	-4.60	1.43	0.69	0.78	2.13	11436	1464	3	0	0	0	0	logfile
✔	8UQ6	42462	2024-09-25	2023-10-23	3.6	5.71	2.81	39.0	0.016	2.36	10.0	0.13	16.35	0.02	2.502	1.87	5.96	23.5	71.6	4.9	-4.36	0.19	0.00	0.38	5.5	0.004	0.87	0.0	0.05	16.60	0.01	2.351	7.50	2.38	20.0	79.5	0.5	-3.96	2.37	0.22	0.15	0.07	11700	765	1	0	0	0	5689	logfile
✔	6JSi	9882	2024-09-27	2019-04-08	4.7	4.70	—	4.6	0.007	1.48	0.0	0.06	15.33	0.01	2.231	10.68	2.42	23.2	72.3	4.5	-6.05	0.64	0.72	—	4.6	0.004	1.03	0.0	0.05	13.24	0.01	2.404	14.15	0.00	24.1	74.2	1.7	-4.86	0.63	0.63	0.70	—	62820	5844	15	0	4044	0	0	logfile
✔	6VW2	21410	2024-09-23	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.005	0.90	0.0	0.05	15.25	0.00	2.507	12.79	4.76	15.9	84.1	0.0	-5.27	0.43	0.39	0.71	1.38	1800	240	10	0	0	0	0	logfile
✔	8GRS	34214	2024-09-23	2022-09-02	3.3	3.91	3.48	3.8	0.016	1.94	6.0	0.13	26.31	0.02	1.285	16.08	44.03	21.3	72.9	5.8	-5.46	0.61	0.72	1.86	3.8	0.004	0.89	0.0	0.04	18.97	0.01	2.301	14.63	7.31	12.2	87.5	0.3	-1.05	1.95	0.50	0.80	1.52	5148	626	2	0	1	0	0	logfile
✔	7YRR	34065	2024-09-30	2022-08-10	4.3	4.40	4.25	4.2	0.013	2.13	5.0	0.11	22.39	0.01	1.874	15.92	26.25	21.4	73.0	5.6	-5.95	0.67	0.46	—	4.2	0.014	0.91	0.0	0.04	14.78	0.01	2.203	29.73	0.13	20.0	79.3	0.7	-4.55	1.24	0.70	0.53	—	24937	1697	4	0	0	0	11408	logfile
✔	7DWV	30887	2024-09-23	2021-01-18	3.07	2.95	—	3.6	0.007	0.80	0.0	0.06	14.69	0.00	2.024	16.67	0.00	26.8	73.2	0.0	-7.45	0.41	0.75	4.09	4.1	0.003	0.68	0.0	0.05	17.47	0.00	2.509	11.08	14.29	17.5	82.5	0.0	-5.79	1.12	0.38	0.71	1.87	2064	258	6	0	0	0	0	logfile
✔	7ASK	11895	2024-09-26	2020-10-27	4.3	4.39	—	4.3	0.028	2.99	47.0	0.22	18.83	0.02	0.766	14.21	2.58	16.8	73.5	9.7	-6.06	0.17	0.51	—	4.3	0.021	1.17	2.0	0.05	15.44	0.01	2.020	15.71	0.08	17.8	80.7	1.5	-3.06	1.29	0.18	0.61	—	12285	1523	2	0	2	0	0	logfile
✔	7VZF	32227	2024-09-23	2021-11-16	2.95	2.71	—	3.0	0.009	1.06	0.0	0.06	16.23	0.01	1.971	38.45	0.00	26.5	73.5	0.0	-5.56	0.30	0.43	-0.13	2.8	0.005	1.00	0.0	0.05	19.17	0.00	2.269	12.50	6.74	19.4	80.6	0.0	-4.18	1.86	0.37	0.63	0.28	2628	363	3	0	0	0	0	logfile
✔	6Kio	9996	2024-09-27	2019-07-19	3.94	4.22	—	3.9	0.035	3.43	48.0	0.22	17.77	0.04	2.231	11.01	8.39	18.6	74.1	7.3	-6.45	0.56	0.66	1.26	3.8	0.003	0.75	0.0	0.04	17.41	0.00	2.377	8.16	2.64	8.2	91.4	0.4	-1.49	1.65	0.65	0.77	1.40	15091	968	3	0	0	0	7442	logfile
✔	5LY6	4118	2024-09-23	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.005	0.87	0.0	0.04	13.99	0.01	2.505	17.30	0.00	11.3	88.5	0.2	-2.96	3.31	0.40	0.77	—	3725	471	1	0	0	0	0	logfile
✔	5G2X	3331	2024-09-28	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	21.03	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.007	1.06	0.0	0.05	25.06	0.01	1.903	37.36	5.67	23.3	75.6	1.1	-4.82	2.36	0.80	0.66	0.87	19072	487	3	704	0	0	0	logfile
✔	9B34	44125	2024-09-23	2024-03-18	3.58	3.87	3.58	3.9	0.007	1.47	0.0	0.08	12.86	0.01	2.121	8.00	0.49	23.6	74.5	1.9	-5.95	0.68	0.68	1.73	3.8	0.006	1.49	1.0	0.06	16.83	0.01	2.041	20.49	6.17	23.0	76.0	1.1	-4.29	2.01	0.72	0.73	0.92	3619	474	4	0	4	0	0	logfile
✔	8GWN	34317	2024-09-29	2022-09-17	3.38	3.97	3.47	3.7	0.015	1.23	0.0	0.06	19.48	0.01	1.979	38.61	14.07	23.5	75.0	1.5	-6.16	0.86	0.83	1.87	3.7	0.004	0.78	0.0	0.04	18.26	0.00	2.076	12.80	3.66	9.3	90.6	0.2	-2.41	0.55	0.87	0.84	1.57	21860	2655	12	52	9	0	0	logfile
✔	9B33	44124	2024-09-23	2024-03-18	4.07	4.25	4.00	4.2	0.007	1.56	0.0	0.08	13.12	0.01	2.141	8.98	0.49	23.2	75.3	1.5	-6.09	0.63	0.62	—	4.1	0.004	1.00	0.0	0.05	12.87	0.01	2.033	18.94	0.00	22.1	77.0	0.9	-4.65	1.21	0.69	0.69	—	3619	474	4	0	4	0	0	logfile
✔	8D1B	27121	2024-09-24	2022-05-27	3.57	3.85	3.45	3.8	0.006	1.09	0.0	0.05	14.42	0.01	2.025	19.71	0.28	24.1	75.9	0.0	-6.32	0.76	0.81	2.61	3.8	0.005	0.89	0.0	0.04	16.57	0.01	2.435	10.30	2.08	18.4	81.6	0.0	-4.80	2.73	0.73	0.79	2.10	6724	874	4	0	0	0	0	logfile
✔	6LYU	30018	2024-09-25	2020-02-15	4.2	4.46	—	4.2	0.009	1.16	6.0	0.06	15.38	0.01	1.986	57.04	1.18	23.1	76.2	0.7	-6.16	0.86	0.81	—	4.2	0.005	0.84	0.0	0.05	14.04	0.01	2.359	22.62	0.00	13.3	86.7	0.0	-3.20	0.82	0.86	0.80	—	11118	1430	5	0	0	0	0	logfile
✔	6H3J	0134	2024-09-28	2018-07-18	3.7	3.83	—	3.7	0.007	0.87	0.0	0.05	10.17	0.00	2.025	43.38	0.05	23.8	76.2	0.0	-6.63	0.77	0.85	3.89	3.7	0.002	0.60	0.0	0.04	13.57	0.00	2.264	50.41	2.03	17.9	82.1	0.0	-5.00	2.68	0.77	0.86	2.67	20301	2511	3	0	0	0	212	logfile
✔	8GSo	34237	2024-09-25	2022-09-06	3.3	3.69	3.38	3.7	0.013	1.66	18.0	0.11	25.12	0.01	1.194	20.44	41.49	17.0	76.3	6.7	-5.21	0.57	0.72	1.47	3.7	0.004	0.84	0.0	0.04	18.12	0.01	2.392	12.56	4.69	12.6	87.1	0.4	-0.37	1.35	0.56	0.84	1.82	10624	1322	2	0	0	0	0	logfile
✔	7NNH	12477	2024-09-23	2021-02-24	4.0	5.15	—	4.2	0.004	1.28	0.0	0.05	15.82	0.01	2.066	35.16	0.34	23.0	76.5	0.5	-3.61	0.74	0.80	—	4.3	0.004	1.08	0.0	0.05	16.97	0.01	2.495	21.50	2.55	20.5	79.4	0.2	-2.77	1.12	0.74	0.79	—	5299	637	1	0	0	0	0	logfile

• ← previous
• Page 4 of 539
• next →