Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SXS	25504	2024-09-30	2021-11-24	2.64	3.48	—	2.9	0.005	0.78	0.0	0.05	12.90	0.01	2.272	2.49	0.00	2.8	97.2	0.0	-0.63	0.85	0.84	2.76	2.9	0.004	0.59	0.0	0.04	13.56	0.00	2.439	5.46	0.62	1.8	98.2	0.0	0.65	1.16	0.86	0.86	2.74	25245	3120	24	0	60	0	0	logfile
✔	7UN3	26612	2024-09-25	2022-04-08	3.5	3.80	3.51	3.8	0.003	0.61	0.0	0.04	13.63	0.01	1.936	13.52	0.00	5.3	94.7	0.0	-0.87	0.63	0.63	1.49	3.8	0.003	0.70	0.0	0.05	16.56	0.00	2.433	11.24	2.18	4.1	95.9	0.0	-0.46	1.13	0.66	0.68	1.85	9423	1164	4	0	0	0	0	logfile
✔	8EiS	28163	2024-09-30	2022-09-15	2.62	2.94	2.68	2.9	0.007	0.70	0.0	0.05	14.60	0.01	2.085	10.61	0.00	3.9	96.1	0.0	0.79	0.70	0.83	4.03	2.9	0.003	0.59	0.0	0.04	14.10	0.00	2.403	9.41	0.44	2.8	97.2	0.0	1.41	0.42	0.66	0.81	4.13	24370	1460	10	0	25	0	12025	logfile
✔	8CWW	27030	2024-09-26	2022-05-19	2.74	3.44	2.94	3.3	0.003	0.48	0.0	0.03	24.38	0.00	2.368	2.74	0.25	2.6	97.4	0.0	0.45	0.86	0.87	3.79	3.3	0.004	0.55	0.0	0.03	25.71	0.00	2.366	3.02	1.47	3.2	96.8	0.0	2.13	0.45	0.90	0.91	2.85	13625	962	12	292	2	0	0	logfile
✔	6Z2X	11051	2024-09-23	2020-05-18	3.2	3.69	—	3.6	0.007	1.10	0.0	0.06	11.80	0.01	2.101	5.58	0.46	8.2	91.8	0.0	-4.50	0.65	0.79	2.29	3.6	0.003	0.78	0.0	0.04	16.15	0.00	1.968	13.11	3.00	7.0	93.0	0.0	-1.02	1.31	0.66	0.82	1.79	46604	5766	6	0	8	0	0	logfile
✔	8A2U	15107	2024-09-27	2022-06-06	2.21	2.31	2.16	2.3	0.004	0.63	0.0	0.04	13.27	0.00	2.173	2.75	0.65	2.5	97.5	0.0	-1.41	0.72	0.86	6.31	2.3	0.002	0.62	0.0	0.04	16.46	0.00	2.097	3.34	0.45	1.0	99.0	0.0	1.54	1.07	0.73	0.88	5.76	15022	1830	15	0	15	512	0	logfile
✔	7SXU	25506	2024-09-30	2021-11-24	3.0	3.77	—	3.3	0.005	0.76	0.0	0.05	12.88	0.01	2.284	2.37	0.00	2.8	97.2	0.0	-0.63	0.82	0.80	2.83	3.3	0.003	0.61	0.0	0.04	13.81	0.00	2.456	5.58	0.59	2.0	98.0	0.0	0.59	1.22	0.82	0.81	2.38	25248	3120	24	0	60	0	0	logfile
✔	8CX1	27033	2024-09-27	2022-05-19	3.3	4.00	3.27	2.9	0.004	0.65	0.0	0.04	14.85	0.00	2.244	4.34	0.06	2.7	97.3	0.0	0.14	0.79	0.65	2.34	3.0	0.007	0.78	0.0	0.04	16.37	0.00	2.311	12.44	1.56	3.8	96.2	0.0	0.46	3.57	0.87	0.81	2.16	15184	1781	16	16	6	0	0	logfile
✔	7X7M	33041	2024-09-28	2022-03-09	2.33	2.38	2.34	2.3	0.007	0.72	13.0	0.05	17.99	0.01	2.256	4.82	2.56	2.6	97.4	0.0	2.72	0.78	0.86	3.51	2.3	0.005	0.67	42.0	0.05	18.61	0.01	2.543	4.03	4.10	2.6	97.4	0.0	2.32	1.18	0.80	0.88	3.61	70620	9240	60	0	0	0	0	logfile
✔	7SXV	25507	2024-09-30	2021-11-24	2.79	3.66	—	3.1	0.005	0.78	0.0	0.05	12.94	0.01	2.290	2.53	0.00	2.7	97.3	0.0	-0.65	0.82	0.78	2.66	3.2	0.003	0.61	0.0	0.04	13.78	0.00	2.422	5.97	0.66	2.3	97.7	0.0	0.40	1.18	0.83	0.82	2.62	25245	3120	24	0	60	0	0	logfile
✔	8DM1	27523	2024-09-29	2022-07-08	3.04	3.80	3.09	3.5	0.005	0.84	0.0	0.06	13.21	0.01	2.305	3.36	0.54	1.7	98.3	0.0	0.41	0.78	0.75	1.04	3.5	0.003	0.60	0.0	0.04	14.53	0.00	2.489	7.34	1.78	1.8	98.2	0.0	0.96	1.11	0.83	0.85	2.23	22276	2751	24	0	55	0	0	logfile
✔	7TFH	25872	2024-09-29	2022-01-06	3.09	2.46	—	3.2	0.003	0.56	0.0	0.04	16.18	0.00	2.066	7.61	0.04	2.9	97.1	0.0	0.09	0.82	0.79	2.41	3.2	0.003	0.58	0.0	0.04	17.56	0.00	1.994	8.45	1.04	3.1	96.9	0.0	0.66	1.70	0.84	0.84	2.21	22831	2717	17	63	9	0	0	logfile
✔	7MJi	23874	2024-09-23	2021-04-20	2.81	3.32	—	3.2	0.006	0.81	0.0	0.05	12.49	0.01	2.367	2.85	0.00	2.8	97.2	0.0	-0.83	0.56	0.84	4.52	3.2	0.003	0.58	0.0	0.04	15.08	0.00	2.546	5.90	2.21	2.2	97.8	0.0	-0.02	1.43	0.56	0.85	4.66	2522	320	3	0	1	0	0	logfile
✔	7T9J	25759	2024-09-29	2021-12-19	2.79	3.38	—	3.2	0.006	0.86	0.0	0.06	13.01	0.01	2.225	4.49	0.17	1.7	98.2	0.0	0.20	0.77	0.71	1.43	3.1	0.004	0.66	0.0	0.05	14.50	0.00	2.397	8.10	1.64	2.6	97.4	0.0	0.31	1.12	0.81	0.83	2.54	21960	2703	24	0	58	0	0	logfile
✔	8A2T	15106	2024-09-27	2022-06-06	2.24	2.35	2.17	2.3	0.004	0.56	0.0	0.04	13.20	0.00	1.880	2.50	0.32	1.9	98.1	0.0	-1.62	0.71	0.87	5.89	2.3	0.006	0.72	0.0	0.05	16.47	0.00	1.845	3.41	1.35	1.3	98.7	0.0	1.27	0.82	0.74	0.90	5.47	15046	1830	15	0	10	556	0	logfile
✔	7E9P	31035	2024-09-23	2021-03-04	3.69	4.11	—	4.0	0.005	0.78	0.0	0.05	16.13	0.00	2.218	11.34	0.00	7.5	92.5	0.0	-2.51	0.74	0.81	2.88	4.0	0.004	0.69	0.0	0.04	15.04	0.00	2.443	8.74	1.66	5.7	94.3	0.0	-1.75	1.19	0.74	0.81	2.36	4898	639	4	0	1	0	0	logfile
✔	8FDG	29011	2024-09-26	2022-12-03	3.2	3.62	—	3.5	0.003	0.68	0.0	0.05	14.00	0.01	2.166	10.24	0.00	11.9	88.1	0.0	-2.81	0.72	0.77	2.13	3.5	0.003	0.68	0.0	0.05	16.19	0.00	2.494	7.23	2.60	11.2	88.8	0.1	-2.71	0.45	0.72	0.78	1.81	12163	1505	1	0	0	0	0	logfile
✔	8E4C	27888	2024-09-24	2022-08-18	4.0	3.22	3.15	3.1	0.005	0.84	2.0	0.07	16.28	0.01	2.251	7.49	1.84	6.1	93.9	0.0	-0.24	0.48	0.49	—	3.1	0.004	0.81	0.0	0.05	17.26	0.01	2.148	13.71	6.21	5.5	94.5	0.0	-0.53	1.25	0.48	0.48	—	6398	805	6	0	5	0	0	logfile
✔	8DLo	27508	2024-09-30	2022-07-08	2.25	2.89	2.48	2.7	0.005	0.78	0.0	0.06	13.69	0.01	2.276	3.05	0.00	2.6	97.4	0.0	-0.19	0.77	0.82	3.35	2.7	0.002	0.55	0.0	0.04	14.31	0.00	2.504	5.62	0.73	2.4	97.6	0.0	0.34	0.39	0.76	0.83	2.83	25257	3120	24	0	60	0	0	logfile
✔	6LMT	0919	2024-09-28	2019-12-26	2.66	2.77	2.50	2.7	0.012	1.14	0.0	0.06	11.69	0.01	2.010	4.14	0.00	2.4	97.6	0.0	-4.48	0.52	0.75	5.03	2.7	0.004	0.70	0.0	0.04	14.77	0.00	2.508	11.55	1.95	1.7	98.3	0.0	2.17	1.29	0.69	0.88	3.08	17552	2032	16	0	32	0	0	logfile

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