Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8E2D	27832	2024-09-27	2022-08-15	2.07	2.27	2.16	2.3	0.003	0.56	0.0	0.04	15.75	0.00	1.968	6.49	0.85	2.0	98.0	0.0	1.44	0.63	0.82	4.02	2.3	0.003	0.56	0.0	0.04	15.82	0.00	2.334	5.54	0.65	2.9	97.1	0.0	1.55	0.34	0.64	0.83	3.93	62460	3936	2	0	0	0	31562	logfile
✔	7QKL	14046	2024-09-23	2021-12-17	2.07	2.04	1.98	2.0	0.011	2.37	0.0	0.25	12.79	0.01	2.537	0.14	0.00	3.6	96.4	0.0	-1.75	0.40	0.83	7.75	2.0	0.003	0.61	0.0	0.05	16.88	0.00	2.619	3.82	0.25	2.7	97.3	0.0	-1.28	1.99	0.44	0.91	8.18	3468	456	6	0	0	0	0	logfile
✔	8iJX	35502	2024-09-25	2023-02-28	2.08	2.24	2.11	2.3	0.007	0.93	0.0	0.05	15.62	0.01	2.024	5.04	1.50	1.7	98.3	0.0	1.40	0.64	0.84	6.06	2.3	0.003	0.54	0.0	0.04	16.75	0.00	1.989	4.11	1.69	1.6	98.4	0.0	1.65	1.09	0.69	0.87	5.53	10545	1251	6	0	12	373	0	logfile
✔	7ZYL	15026	2024-09-23	2022-05-25	2.08	2.56	2.12	2.4	0.022	0.98	0.0	0.05	24.65	0.00	2.104	14.15	0.00	0.8	99.2	0.0	0.55	0.77	0.89	6.49	2.4	0.003	0.59	0.0	0.04	20.03	0.00	2.595	4.50	1.67	0.8	99.2	0.0	0.47	0.34	0.79	0.90	6.49	3992	484	12	0	12	0	0	logfile
✔	7KJR	22898	2024-09-23	2020-10-26	2.08	2.52	2.15	2.4	0.006	0.84	0.0	0.05	19.50	0.00	2.254	7.60	0.25	1.8	98.2	0.0	1.13	0.68	0.87	5.29	2.4	0.002	0.50	0.0	0.04	17.46	0.00	2.512	7.33	0.99	1.8	98.2	0.0	2.24	0.25	0.66	0.87	4.69	3840	448	8	0	2	122	0	logfile
✔	7RZQ	24774	2024-09-23	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.002	0.29	0.0	0.03	14.97	0.00	2.630	4.28	1.07	0.0	100.0	0.0	6.40	0.29	0.81	0.82	1.34	2421	322	6	0	0	0	0	logfile
✔	8Q8R	18258	2024-09-23	2023-08-18	2.1	1.89	2.15	1.9	0.011	1.82	6.0	0.10	11.11	0.01	2.505	0.00	0.00	11.0	89.0	0.0	-1.41	0.39	0.83	5.91	1.9	0.004	0.75	0.0	0.05	16.88	0.00	2.597	4.39	3.28	7.7	92.3	0.0	-1.65	1.06	0.44	0.88	5.86	3468	456	6	0	0	0	0	logfile
✔	7QET	13940	2024-09-28	2021-12-03	2.1	2.53	2.11	2.3	0.006	0.88	0.0	0.04	13.42	0.00	2.140	1.99	2.38	2.2	97.8	0.0	1.49	0.82	0.90	3.95	2.3	0.003	0.56	0.0	0.04	14.44	0.00	2.547	3.15	2.23	1.8	98.2	0.0	3.71	0.40	0.82	0.92	3.86	19205	2256	36	0	60	305	0	logfile
✔	7SC8	25029	2024-09-25	2021-09-27	2.1	2.19	2.13	1.9	0.008	1.12	10.0	0.07	14.65	0.01	2.102	5.20	0.38	1.0	99.0	0.0	2.13	0.82	0.79	4.35	1.9	0.004	0.67	2.0	0.04	16.07	0.00	1.926	7.46	1.31	1.0	98.9	0.1	3.06	0.38	0.86	0.86	3.86	56784	6836	116	0	54	2672	0	logfile
✔	7QEW	13943	2024-09-25	2021-12-03	2.1	2.62	—	2.2	0.005	0.86	0.0	0.03	11.15	0.00	2.191	3.73	2.18	3.3	96.7	0.0	1.32	0.78	0.89	4.62	2.3	0.003	0.69	0.0	0.04	14.49	0.00	2.556	5.30	1.59	3.1	96.9	0.0	3.03	1.06	0.79	0.92	3.36	9702	1128	18	0	30	234	0	logfile
✘	8BC3	15961	2024-09-27	2022-10-14	2.1	2.00	2.14	2.2	0.014	1.93	0.0	0.10	18.17	0.02	2.310	1.34	11.95	3.3	96.7	0.0	-4.28	0.71	0.84	5.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16880	2170	30	0	10	500	0	logfile
✔	7PBW	13307	2024-09-25	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.005	0.83	0.0	0.04	14.43	0.01	2.204	6.90	0.15	0.0	100.0	0.0	4.47	0.28	0.77	0.90	7.33	9500	873	54	0	81	230	0	logfile
✔	8FUZ	29482	2024-09-30	2023-01-18	2.1	2.08	2.21	2.1	0.007	0.86	0.0	0.05	18.07	0.01	2.232	4.59	1.17	2.1	97.9	0.0	0.92	0.78	0.91	5.73	2.1	0.002	0.54	0.0	0.04	17.97	0.00	2.508	3.04	1.61	1.9	98.1	0.0	1.26	0.32	0.76	0.90	5.48	24008	3120	16	0	16	0	0	logfile
✔	8TUE	41622	2024-09-27	2023-08-16	2.1	2.26	2.18	2.3	0.003	0.50	0.0	0.03	18.50	0.00	1.765	6.27	0.69	2.7	97.3	0.0	4.33	0.62	0.83	6.49	2.3	0.006	0.63	0.0	0.04	18.56	0.00	1.506	6.78	0.55	3.0	97.0	0.0	3.66	0.28	0.66	0.86	6.66	66246	4128	48	0	30	0	32400	logfile
✔	6LXV	30007	2024-09-25	2020-02-12	2.1	2.18	—	2.2	0.025	1.66	0.0	0.12	16.13	0.01	2.196	2.01	2.81	3.9	95.9	0.1	-1.79	0.78	0.91	6.69	2.2	0.002	0.57	0.0	0.04	16.39	0.00	2.161	4.23	0.51	2.7	97.3	0.0	1.21	0.94	0.79	0.90	6.06	54924	6448	24	0	16	2967	0	logfile
✔	8iJV	35500	2024-09-25	2023-02-28	2.1	2.26	2.14	2.3	0.008	1.10	0.0	0.07	20.11	0.01	1.973	7.26	2.73	2.1	97.9	0.0	1.17	0.62	0.83	5.35	2.3	0.003	0.70	0.0	0.06	19.45	0.00	1.901	4.17	2.26	1.8	98.2	0.0	1.47	0.78	0.64	0.85	5.22	10532	1251	6	0	12	369	0	logfile
✔	7QUN	14149	2024-09-29	2022-01-18	2.1	2.22	—	2.2	0.005	0.72	0.0	0.05	15.64	0.00	2.230	4.57	0.88	2.1	97.9	0.0	0.29	0.63	0.77	5.98	2.2	0.003	0.67	0.0	0.05	15.45	0.00	2.462	1.67	0.83	2.2	97.8	0.0	0.30	0.22	0.74	0.86	6.15	21094	2773	8	0	4	0	0	logfile
✔	7SCA	25031	2024-09-25	2021-09-27	2.1	2.23	2.15	2.2	0.011	1.14	7.0	0.07	14.95	0.01	2.057	5.44	0.78	1.0	99.0	0.0	2.17	0.79	0.85	5.74	2.2	0.003	0.62	0.0	0.04	16.40	0.00	2.427	7.14	1.19	1.1	98.9	0.0	2.74	1.09	0.79	0.85	5.36	55437	6836	116	0	54	1325	0	logfile
✔	8U8Y	42029	2024-09-29	2023-09-18	2.1	2.25	2.12	2.3	0.007	0.75	0.0	0.05	17.23	0.01	2.328	2.24	1.76	2.6	97.4	0.0	0.39	0.74	0.86	5.43	2.3	0.002	0.47	0.0	0.04	17.06	0.00	2.512	3.37	0.56	2.7	97.3	0.0	1.39	1.21	0.71	0.85	5.20	22616	2936	16	0	16	0	0	logfile
✘	8DBK	27287	2024-09-27	2022-06-14	2.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14612	1868	18	0	30	12	0	logfile

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