Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RZT	24777	2024-09-23	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.1	0.003	0.32	0.0	0.03	15.49	0.00	2.612	5.44	0.00	0.0	100.0	0.0	6.18	0.22	0.80	0.83	2.98	2451	324	6	0	0	0	0	logfile
✔	8SDU	40352	2024-09-23	2023-04-07	2.05	2.16	2.08	2.1	0.002	0.49	0.0	0.04	14.85	0.00	2.231	4.34	0.71	1.0	99.0	0.0	2.05	0.74	0.85	5.13	2.1	0.003	0.56	0.0	0.04	15.05	0.00	2.585	2.68	0.95	0.8	99.2	0.0	2.66	0.22	0.73	0.86	4.95	3942	500	2	0	0	70	0	logfile
✔	8T4G	41030	2024-09-24	2023-06-09	3.5	3.76	3.37	3.7	0.003	0.53	0.0	0.04	15.82	0.00	2.254	5.37	0.14	2.2	97.8	0.0	2.80	0.68	0.82	1.39	3.7	0.003	0.53	0.0	0.04	16.52	0.00	2.520	4.16	3.25	1.9	98.1	0.0	3.07	0.22	0.67	0.82	1.57	7721	1089	3	0	0	0	0	logfile
✔	8DNR	27577	2024-09-25	2022-07-11	2.8	3.02	2.87	3.0	0.003	0.52	0.0	0.05	15.27	0.00	1.992	5.07	1.47	2.4	97.5	0.1	0.42	0.66	0.84	3.88	3.0	0.003	0.50	0.0	0.05	15.50	0.00	2.532	3.36	1.65	2.7	97.3	0.0	0.79	0.22	0.68	0.85	3.77	10191	1314	6	0	12	0	0	logfile
✔	8GGQ	40017	2024-09-23	2023-03-08	3.4	3.52	3.32	3.5	0.004	0.55	0.0	0.04	12.05	0.00	2.313	2.87	0.00	0.7	99.3	0.0	2.40	0.54	0.85	2.97	3.5	0.003	0.47	0.0	0.04	13.61	0.00	2.571	2.16	2.40	0.4	99.6	0.0	2.87	0.22	0.53	0.85	2.69	2130	281	2	0	1	0	0	logfile
✔	8UUX	42600	2024-09-26	2023-11-02	2.74	2.87	2.62	2.9	0.002	0.63	0.0	0.05	15.62	0.01	2.133	3.59	0.95	5.7	94.2	0.1	-1.63	0.41	0.85	3.94	2.9	0.004	0.92	1.0	0.05	16.31	0.01	2.106	2.82	3.47	5.8	94.1	0.1	-1.15	0.22	0.42	0.85	3.54	12084	1532	9	0	3	310	0	logfile
✔	7Y15	33557	2024-09-24	2022-06-06	2.9	3.05	2.85	3.1	0.003	0.56	0.0	0.04	16.24	0.00	2.248	7.87	2.70	2.2	97.8	0.0	1.26	0.67	0.84	3.40	3.1	0.004	0.61	0.0	0.04	16.37	0.00	2.415	7.33	2.36	3.1	96.9	0.0	1.37	0.22	0.66	0.85	3.48	8495	1109	6	0	3	0	0	logfile
✔	8V7Z	43011	2024-09-24	2023-12-04	3.4	2.66	3.42	3.5	0.002	0.58	0.0	0.04	19.31	0.00	2.004	11.77	0.41	4.8	95.2	0.0	-0.10	0.50	0.72	1.84	3.5	0.005	0.66	0.0	0.04	19.28	0.00	1.920	10.18	6.18	5.8	94.1	0.1	-0.23	0.22	0.57	0.76	1.67	8977	1104	2	0	10	0	0	logfile
✔	8KB5	37070	2024-09-26	2023-08-03	2.26133	2.35	2.23	2.3	0.007	0.98	0.0	0.05	28.08	0.01	2.377	0.00	0.00	0.7	99.3	0.0	2.15	0.79	0.85	3.73	2.3	0.005	0.61	0.0	0.04	28.30	0.00	2.530	3.62	2.07	0.8	99.2	0.0	2.76	0.23	0.78	0.85	3.64	11953	758	10	290	0	0	0	logfile
✔	8QT6	18644	2024-09-23	2023-10-12	2.29	2.56	2.40	2.6	0.004	0.60	0.0	0.04	18.31	0.00	2.174	4.72	0.86	1.8	98.2	0.0	0.77	0.66	0.84	3.87	2.6	0.003	0.64	0.0	0.04	18.41	0.00	2.556	3.24	1.44	2.0	98.0	0.0	1.50	0.23	0.59	0.80	3.79	3466	399	2	0	3	63	0	logfile
✔	8TSH	41592	2024-09-30	2023-08-11	3.1	3.43	—	3.3	0.003	0.57	0.0	0.04	18.66	0.00	2.003	6.81	0.19	2.4	97.6	0.0	1.77	0.72	0.86	2.52	3.3	0.004	0.57	0.0	0.04	18.77	0.00	1.935	7.61	4.15	2.3	97.7	0.0	2.12	0.23	0.73	0.87	2.34	24254	3000	14	0	4	0	0	logfile
✔	9EWQ	50022	2024-09-26	2024-04-04	3.0	3.34	3.05	3.3	0.004	0.57	0.0	0.05	13.59	0.00	2.141	4.88	0.08	5.2	94.8	0.0	-1.34	0.82	0.88	4.02	3.3	0.004	0.57	0.0	0.05	15.08	0.00	2.303	3.67	2.11	4.7	95.3	0.0	-1.15	0.23	0.77	0.89	3.55	11904	1540	4	0	0	0	0	logfile
✔	8GG6	29996	2024-09-24	2023-03-08	3.3	3.48	3.26	3.5	0.004	0.55	0.0	0.04	15.25	0.00	2.213	3.55	0.31	1.3	98.7	0.0	0.67	0.70	0.88	3.24	3.5	0.004	0.59	0.0	0.04	15.75	0.00	2.488	2.62	3.27	3.4	96.6	0.0	0.78	0.23	0.69	0.88	3.21	6725	904	6	0	2	4	0	logfile
✔	8R54	18891	2024-09-27	2023-11-15	3.5	3.54	3.52	3.5	0.006	0.65	1.0	0.05	18.75	0.00	2.176	9.13	0.35	8.8	91.2	0.1	-1.09	0.83	0.85	2.67	3.5	0.005	0.82	1.0	0.05	17.17	0.00	2.454	7.40	2.89	7.0	93.0	0.0	-0.77	0.23	0.82	0.85	2.50	15900	1982	11	0	24	0	0	logfile
✔	7MGM	23829	2024-09-30	2021-04-12	3.1	3.35	3.11	3.0	0.004	0.55	0.0	0.04	14.45	0.00	1.874	5.80	0.04	2.4	97.6	0.0	0.78	0.87	0.89	2.62	3.0	0.002	0.46	0.0	0.04	15.11	0.00	1.982	4.07	0.44	2.1	97.9	0.0	1.59	0.23	0.87	0.90	2.10	24079	2964	4	0	6	0	0	logfile
✔	8EL9	28225	2024-09-28	2022-09-23	2.27	2.39	2.29	2.4	0.003	0.65	0.0	0.05	17.09	0.01	2.197	3.40	1.23	2.5	97.5	0.0	0.05	0.75	0.85	4.95	2.4	0.005	0.77	0.0	0.05	17.22	0.01	2.413	5.18	1.28	2.7	97.3	0.0	0.04	0.23	0.75	0.86	5.18	17429	1990	12	0	8	1015	0	logfile
✔	8EZ8	28730	2024-09-23	2022-10-31	2.78	3.04	2.78	3.0	0.004	0.62	0.0	0.05	17.32	0.00	1.943	10.37	1.89	4.1	95.8	0.2	-0.51	0.53	0.83	3.28	3.0	0.003	0.57	0.0	0.05	16.21	0.00	2.564	6.56	2.65	3.4	96.4	0.2	-0.39	0.23	0.52	0.83	3.12	4847	621	5	0	9	0	0	logfile
✔	8XCJ	38245	2024-09-28	2023-12-09	2.98	3.11	2.98	3.1	0.004	0.69	6.0	0.05	18.49	0.00	2.138	9.20	6.95	3.3	96.1	0.6	-0.54	0.72	0.87	3.86	3.1	0.008	0.80	0.0	0.05	18.43	0.01	2.464	7.94	5.26	4.6	95.0	0.4	-0.80	0.23	0.76	0.89	4.08	19809	2526	6	0	0	0	0	logfile
✔	8HH7	34754	2024-09-30	2022-11-16	2.5	3.02	2.62	2.8	0.004	0.59	0.0	0.05	13.52	0.00	1.560	3.12	0.04	1.9	98.1	0.0	1.55	0.85	0.92	4.56	2.8	0.002	0.50	0.0	0.04	14.46	0.00	2.010	3.02	0.70	2.3	97.7	0.0	1.73	0.23	0.84	0.93	3.84	24250	3129	13	0	12	0	0	logfile
✔	8JAN	36130	2024-09-29	2023-05-06	3.3	3.48	3.09	3.4	0.003	0.53	0.0	0.04	12.83	0.00	2.199	4.25	0.00	4.2	95.8	0.0	-0.26	0.72	0.89	3.06	3.4	0.003	0.53	2.0	0.04	14.37	0.00	2.326	3.42	0.64	4.0	96.0	0.0	-0.44	0.23	0.73	0.91	2.77	75114	9834	30	0	0	0	0	logfile

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