Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y66	33635	2024-09-25	2022-06-18	2.9	2.32	2.83	2.1	0.002	0.58	0.0	0.04	12.30	0.00	2.144	6.52	0.00	2.3	97.7	0.0	0.09	0.77	0.77	2.22	2.1	0.003	0.60	0.0	0.04	15.79	0.00	2.492	4.50	2.38	3.0	97.0	0.0	0.82	0.44	0.79	0.81	2.40	8917	1139	7	0	2	0	0	logfile
✔	7JG9	22315	2024-09-28	2020-07-18	3.4	2.37	3.49	3.4	0.009	1.56	0.0	0.20	9.66	0.01	2.424	0.51	0.00	2.9	96.8	0.3	-1.25	0.61	0.54	—	2.3	0.006	1.10	0.0	0.10	8.50	0.01	2.480	1.02	0.00	15.6	84.3	0.1	-1.84	1.32	0.72	0.71	—	19569	4826	26	0	7	0	0	logfile
✔	7V69	31739	2024-09-25	2021-08-20	3.4	2.24	—	2.0	0.003	0.65	0.0	0.04	12.64	0.00	2.096	13.28	0.00	2.9	97.1	0.0	-2.02	0.68	0.64	2.22	2.0	0.004	0.66	0.0	0.04	15.16	0.00	2.469	11.80	2.91	4.3	95.7	0.0	-1.07	0.44	0.70	0.69	2.00	8539	1122	5	0	0	0	0	logfile
✔	8ET3	28585	2024-09-25	2022-10-16	3.7	4.31	3.57	3.7	0.003	0.61	0.0	0.04	12.77	0.00	2.082	2.30	0.00	0.3	99.7	0.0	-0.04	0.86	0.78	2.35	3.7	0.003	0.53	0.0	0.04	14.26	0.00	2.185	3.46	0.49	3.2	96.8	0.0	1.52	1.07	0.86	0.80	2.32	56854	3639	22	0	6	0	28542	logfile
✔	3JCA	6441	2024-09-25	2015-11-24	4.8	4.59	—	4.5	0.012	1.49	0.0	0.07	18.84	0.01	2.370	2.63	0.00	7.2	92.8	0.0	-1.87	0.75	0.75	—	4.5	0.003	0.65	0.0	0.04	19.41	0.01	2.404	12.84	0.10	4.9	95.1	0.0	-0.01	2.46	0.76	0.77	—	11466	1226	16	80	4	0	0	logfile
✔	7oDF	12827	2024-09-24	2021-04-29	2.66	3.20	—	3.1	0.003	0.49	0.0	0.04	19.38	0.00	1.952	6.12	0.00	1.4	98.6	0.0	1.47	0.75	0.83	3.58	3.1	0.003	0.53	0.0	0.04	20.24	0.00	1.995	7.39	2.35	2.1	97.9	0.0	1.74	0.88	0.70	0.81	3.51	6847	703	7	78	2	5	0	logfile
✔	6XN4	22267	2024-09-28	2020-07-02	3.35	3.89	—	3.3	0.009	1.24	0.0	0.07	17.20	0.01	2.166	10.06	0.00	10.0	89.8	0.1	-3.52	0.87	0.78	1.71	3.3	0.005	0.75	0.0	0.04	17.95	0.00	2.486	14.28	1.91	9.7	90.2	0.1	-1.90	0.39	0.88	0.80	1.23	19273	2234	10	65	0	0	0	logfile
✔	6WYL	21968	2024-09-24	2020-05-13	3.9	3.99	—	4.0	0.012	0.91	0.0	0.05	11.33	0.01	2.237	3.66	0.00	2.7	97.3	0.0	-1.66	0.65	0.82	1.94	4.0	0.003	0.75	0.0	0.04	15.65	0.00	2.389	8.91	2.88	2.6	97.4	0.0	2.08	1.28	0.66	0.82	1.40	8847	1194	6	0	0	0	0	logfile
✔	7Fii	31598	2024-09-25	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.66	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	4.1	0.003	0.60	0.0	0.04	9.55	0.00	2.607	4.77	0.00	3.2	96.8	0.0	0.73	0.72	0.66	0.75	—	8765	1522	6	0	0	0	0	logfile
✔	6M66	30114	2024-09-27	2020-03-13	4.1	4.40	—	4.2	0.005	1.08	0.0	0.06	16.35	0.01	2.024	9.42	0.00	8.8	91.2	0.0	-5.00	0.64	0.75	—	4.2	0.003	0.82	0.0	0.05	14.92	0.01	2.593	13.27	0.00	8.1	91.9	0.0	-1.16	1.68	0.64	0.74	—	14938	1855	7	0	0	0	0	logfile
✔	7RXB	24727	2024-09-24	2021-08-22	3.07	3.22	—	3.2	0.009	1.15	0.0	0.05	16.23	0.01	2.437	0.72	0.00	6.0	94.0	0.0	-4.88	0.67	0.89	3.48	3.2	0.004	0.59	0.0	0.04	15.08	0.00	2.595	1.32	1.26	4.6	95.4	0.0	-0.16	0.26	0.64	0.89	3.21	8506	1096	4	0	8	0	0	logfile
✔	7X10	32932	2024-09-24	2022-02-22	2.93	2.29	—	2.1	0.005	0.80	0.0	0.05	12.69	0.00	2.192	2.72	0.00	7.5	92.5	0.0	-1.18	0.75	0.73	2.91	2.0	0.004	0.68	0.0	0.04	15.48	0.00	2.474	4.80	2.53	5.8	94.2	0.0	-0.33	1.15	0.76	0.76	2.22	8674	1098	5	0	0	0	0	logfile
✔	8DL0	27494	2024-09-28	2022-07-06	4.1	4.31	4.17	4.1	0.003	0.67	0.0	0.05	13.22	0.00	2.168	13.34	0.00	4.1	95.9	0.0	0.25	0.73	0.75	—	4.1	0.003	0.64	0.0	0.04	13.58	0.00	2.331	10.95	0.00	4.0	96.0	0.0	0.14	1.19	0.73	0.76	—	10377	1268	4	0	0	0	0	logfile
✔	7T37	25650	2024-09-28	2021-12-07	3.7	4.02	—	4.0	0.007	0.85	0.0	0.05	13.20	0.01	2.247	4.17	0.00	3.8	96.2	0.0	-1.43	0.69	0.82	2.15	3.9	0.005	0.64	0.0	0.04	14.39	0.00	2.578	6.62	1.67	3.7	96.3	0.0	1.27	0.29	0.69	0.83	1.87	20176	2476	8	0	8	0	0	logfile
✔	6XWP	10634	2024-09-25	2020-01-24	3.38	3.76	—	3.7	0.007	0.72	0.0	0.04	12.99	0.01	2.107	10.70	0.00	6.1	93.9	0.0	-3.13	0.70	0.84	1.88	3.7	0.003	0.67	0.0	0.04	14.95	0.01	2.366	9.38	2.49	3.6	96.4	0.0	1.35	0.46	0.71	0.84	1.09	9552	1280	5	0	0	0	0	logfile
✔	6oLM	20117	2024-09-28	2019-04-16	4.4	5.29	—	4.3	0.012	1.28	0.0	0.06	10.91	0.01	2.397	0.92	0.00	2.0	98.0	0.0	-0.33	0.89	0.79	—	4.3	0.003	0.67	0.0	0.04	9.41	0.00	2.594	2.95	0.00	6.8	93.2	0.0	-0.29	1.57	0.91	0.83	—	10602	2112	12	0	6	0	0	logfile
✔	6oo5	20146	2024-09-28	2019-04-22	4.2	4.30	4.10	4.2	0.012	1.05	0.0	0.06	10.64	0.01	2.246	3.18	0.00	4.5	95.5	0.0	-2.74	0.65	0.68	—	4.2	0.002	0.63	0.0	0.04	11.61	0.00	2.535	5.67	0.00	3.4	96.6	0.0	1.95	0.66	0.72	0.78	—	17548	2440	8	0	4	0	0	logfile
✔	3JCZ	6630	2024-09-29	2016-03-27	3.26	3.11	—	3.3	0.008	0.69	0.0	0.05	7.32	0.01	2.244	8.75	0.00	7.0	93.0	0.0	-4.42	0.77	0.85	4.34	3.3	0.005	0.68	0.0	0.05	14.10	0.00	2.484	9.62	2.16	5.6	94.4	0.0	-0.29	2.05	0.78	0.88	2.36	23286	2976	6	0	0	0	0	logfile
✔	7K65	22689	2024-09-24	2020-09-18	3.4	3.95	3.54	3.9	0.006	0.80	0.0	0.06	13.57	0.00	2.213	8.32	0.00	2.9	97.1	0.0	-1.91	0.54	0.76	2.44	3.9	0.004	0.68	0.0	0.04	15.07	0.00	2.481	9.95	3.46	5.7	94.3	0.0	0.87	0.53	0.53	0.76	1.69	8796	1120	4	0	11	0	0	logfile
✔	7WVV	32859	2024-09-24	2022-02-11	2.9	3.01	—	3.1	0.002	0.45	0.0	0.04	12.21	0.00	2.286	7.42	0.00	2.2	97.8	0.0	0.74	0.59	0.74	2.55	3.0	0.003	0.56	0.0	0.04	15.57	0.00	2.541	8.20	1.89	3.1	96.9	0.0	0.51	0.45	0.61	0.79	2.88	7020	911	5	0	0	0	0	logfile

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