Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Kio	9996	2024-09-27	2019-07-19	3.94	4.22	—	3.9	0.035	3.43	48.0	0.22	17.77	0.04	2.231	11.01	8.39	18.6	74.1	7.3	-6.45	0.56	0.66	1.26	3.8	0.003	0.75	0.0	0.04	17.41	0.00	2.377	8.16	2.64	8.2	91.4	0.4	-1.49	1.65	0.65	0.77	1.40	15091	968	3	0	0	0	7442	logfile
✔	7E1A	30938	2024-09-25	2021-02-01	3.66	4.00	—	3.9	0.012	1.39	0.0	0.07	13.32	0.01	2.233	7.56	0.81	11.6	88.3	0.1	-6.43	0.63	0.78	1.89	3.9	0.003	0.77	0.0	0.04	15.97	0.00	2.553	8.80	2.63	7.3	92.7	0.0	-3.29	1.33	0.64	0.79	1.15	9284	1189	2	0	1	0	0	logfile
✔	8WoM	37692	2024-09-25	2023-10-07	3.5	3.76	3.53	3.7	0.005	1.04	5.0	0.07	11.19	0.01	1.004	3.36	0.00	9.1	90.9	0.0	-6.42	0.66	0.82	2.93	3.7	0.002	0.64	0.0	0.04	14.07	0.00	2.400	4.43	1.33	5.9	94.1	0.0	-2.74	0.72	0.66	0.82	1.78	9348	1217	2	0	1	0	0	logfile
✔	6VXH	21437	2024-09-25	2020-02-21	4.0	4.27	—	4.2	0.006	1.07	0.0	0.06	16.22	0.01	2.245	5.74	0.31	9.9	89.9	0.2	-6.42	0.65	0.82	—	4.2	0.004	0.79	0.0	0.05	16.82	0.00	2.400	9.03	3.53	9.6	90.4	0.0	-2.14	1.72	0.65	0.82	—	8879	1130	4	0	3	0	0	logfile
✔	8Woi	37690	2024-09-25	2023-10-07	3.4	3.58	3.35	3.6	0.005	1.20	6.0	0.06	10.49	0.01	1.818	2.83	0.10	9.1	90.8	0.1	-6.42	0.68	0.83	3.78	3.6	0.003	0.67	0.0	0.04	13.85	0.00	2.444	3.96	1.42	7.5	92.5	0.0	-2.63	0.64	0.68	0.85	2.63	9324	1217	1	0	0	0	0	logfile
✔	6A70	6991	2024-09-27	2018-06-29	3.6	4.21	—	3.7	0.009	1.20	0.0	0.06	12.37	0.01	2.200	4.77	1.28	9.2	90.7	0.1	-6.41	0.52	0.57	0.70	3.8	0.004	0.84	0.0	0.04	14.75	0.00	2.475	10.47	3.09	6.1	93.9	0.0	-1.40	1.22	0.58	0.72	1.00	15142	2086	4	0	0	0	0	logfile
✔	7F92	31495	2024-09-29	2021-07-03	3.1	3.23	3.05	3.2	0.008	1.29	0.0	0.05	16.75	0.01	2.271	0.63	2.29	3.0	97.0	0.0	-6.40	0.75	0.90	3.09	3.2	0.002	0.57	0.0	0.04	15.58	0.00	2.636	1.62	1.90	1.6	98.4	0.0	1.04	0.33	0.73	0.90	2.61	21240	2352	36	0	132	264	0	logfile
✔	6RBG	4798	2024-09-28	2019-04-10	3.0	3.55	—	3.4	0.004	0.89	0.0	0.05	14.50	0.00	2.407	3.44	0.38	2.0	98.0	0.0	-6.39	0.67	0.80	3.37	3.4	0.002	0.64	0.0	0.04	17.22	0.00	2.595	3.11	1.71	1.4	98.6	0.0	0.64	0.55	0.72	0.84	2.48	19336	2464	8	0	0	0	0	logfile
✔	6LTN	0975	2024-09-26	2020-01-23	3.1	3.48	3.04	3.5	0.006	0.95	0.0	0.05	16.29	0.01	2.033	2.43	1.38	4.7	95.3	0.0	-6.39	0.65	0.79	2.98	3.4	0.004	0.74	0.0	0.04	17.40	0.01	2.489	7.64	4.06	3.2	96.8	0.0	0.08	1.20	0.65	0.81	3.00	13615	1708	7	0	0	0	0	logfile
✔	8J2G	35949	2024-09-23	2023-04-14	3.4	3.72	3.48	3.7	0.010	1.14	0.0	0.06	10.18	0.01	2.033	3.24	0.00	10.7	89.3	0.0	-6.39	0.59	0.79	3.09	3.7	0.003	0.75	0.0	0.04	14.38	0.00	2.584	2.65	2.17	7.5	92.5	0.0	-2.63	1.69	0.55	0.78	2.37	5058	650	2	0	0	0	0	logfile
✔	7N88	24233	2024-09-25	2021-06-14	3.7	3.90	—	3.9	0.008	1.04	0.0	0.05	15.40	0.01	1.680	28.91	0.81	21.4	78.3	0.2	-6.39	0.74	0.73	1.71	3.9	0.005	0.91	1.0	0.05	16.88	0.01	1.934	15.13	3.66	12.9	87.0	0.1	-3.52	0.53	0.72	0.70	1.36	9402	1220	3	0	4	0	0	logfile
✔	6A91	6996	2024-09-26	2018-07-11	3.2	3.32	—	3.3	0.009	1.14	0.0	0.06	13.00	0.01	2.238	6.00	1.22	7.8	91.6	0.6	-6.38	0.60	0.82	4.21	3.3	0.003	0.68	0.0	0.04	15.61	0.00	2.423	4.46	3.14	7.5	92.3	0.1	-0.63	0.71	0.65	0.86	2.84	11182	1380	6	0	10	3	0	logfile
✔	5TJ5	8409	2024-09-27	2016-10-03	3.9	4.19	—	4.1	0.010	1.29	0.0	0.05	9.13	0.01	1.040	27.77	0.12	14.4	85.2	0.4	-6.37	0.62	0.69	1.87	4.2	0.003	0.89	0.0	0.05	12.89	0.00	2.483	13.22	3.06	5.7	94.1	0.2	0.47	1.77	0.62	0.74	0.69	14976	2102	16	0	365	0	0	logfile
✔	6MUP	9251	2024-09-27	2018-10-23	3.5	3.90	—	3.8	0.013	1.19	1.0	0.06	25.82	0.01	1.379	7.59	1.08	10.3	89.2	0.5	-6.36	0.61	0.61	2.67	3.8	0.003	0.66	0.0	0.04	26.42	0.00	2.457	9.55	2.15	8.3	91.7	0.0	-1.74	0.73	0.75	0.79	1.22	15803	1224	14	294	0	0	0	logfile
✔	5LiJ	4054	2024-09-23	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.64	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.005	1.11	0.0	0.04	9.68	0.00	2.554	11.83	0.00	32.7	67.3	0.0	-5.72	0.60	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	6M23	30061	2024-09-27	2020-02-26	3.2	3.49	—	3.3	0.010	1.12	0.0	0.07	14.89	0.01	2.216	8.07	2.32	10.7	87.8	1.5	-6.36	0.68	0.79	2.75	3.3	0.003	0.77	0.0	0.05	15.62	0.00	2.499	6.55	2.77	9.9	89.7	0.4	-1.45	0.77	0.67	0.83	2.00	14744	1872	12	0	18	2	0	logfile
✘	6QCM	4508	2024-09-24	2018-12-28	4.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-6.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52697	6998	60	0	0	0	0	logfile
✔	6LR0	31583	2024-09-25	2020-01-15	3.5	3.87	—	3.8	0.011	1.38	0.0	0.07	13.07	0.01	2.291	5.77	0.88	11.0	88.9	0.1	-6.35	0.66	0.78	1.71	3.8	0.003	0.76	0.0	0.04	15.74	0.00	2.514	7.80	1.95	6.5	93.5	0.0	-3.66	0.83	0.64	0.75	1.10	9576	1230	1	0	0	0	0	logfile
✔	6WUN	21917	2024-09-25	2020-05-04	3.9	4.00	—	3.9	0.005	0.80	0.0	0.05	13.70	0.00	2.166	14.26	1.14	18.4	81.6	0.0	-6.35	0.68	0.80	1.75	3.9	0.003	0.72	0.0	0.04	14.78	0.00	2.541	7.21	0.85	9.9	90.1	0.0	-3.47	0.55	0.67	0.78	1.54	10082	1326	4	0	0	0	0	logfile
✔	6YKR	10830	2024-09-25	2020-04-06	3.0	3.10	2.86	3.1	0.004	0.84	0.0	0.05	9.41	0.01	2.314	2.33	0.00	2.6	97.4	0.0	-6.35	0.66	0.85	5.11	3.1	0.003	0.67	0.0	0.04	15.87	0.00	2.593	6.36	1.30	2.3	97.7	0.0	1.02	1.14	0.67	0.88	3.40	10189	1326	9	0	0	6	0	logfile

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