Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HBH	34632	2024-09-24	2022-10-28	3.1	3.30	—	3.3	0.008	0.84	0.0	0.05	15.29	0.01	2.007	10.23	0.90	3.2	96.8	0.0	-0.10	0.68	0.78	2.79	3.3	0.003	0.60	0.0	0.04	15.66	0.00	1.115	7.45	2.81	2.1	97.9	0.0	0.94	0.30	0.72	0.81	2.53	8502	1099	4	0	5	0	0	logfile
✔	7DL2	30708	2024-09-29	2020-11-25	4.4	4.72	—	4.3	0.006	0.88	1.0	0.06	13.74	0.00	2.198	35.65	1.11	10.1	89.8	0.1	-3.66	0.81	0.80	—	4.3	0.003	0.69	0.0	0.04	13.56	0.00	2.388	14.53	0.00	7.2	92.8	0.0	-0.09	0.59	0.82	0.82	—	23285	2886	6	0	203	0	0	logfile
✔	7WSA	32752	2024-09-24	2022-01-28	3.0	3.42	—	3.4	0.004	0.78	0.0	0.05	13.94	0.01	2.185	11.53	0.00	2.9	97.1	0.0	-1.59	0.76	0.71	2.04	3.4	0.004	0.76	0.0	0.05	15.65	0.00	2.497	11.76	1.71	3.3	96.7	0.0	0.57	0.70	0.78	0.77	1.78	6567	796	4	0	7	0	0	logfile
✔	7WWK	32868	2024-09-24	2022-02-13	3.4	3.74	—	3.6	0.005	0.71	0.0	0.05	12.68	0.00	2.206	7.38	0.00	4.1	95.7	0.2	-0.93	0.74	0.87	3.33	3.6	0.003	0.60	0.0	0.04	14.92	0.00	2.516	5.38	2.63	4.7	95.3	0.0	-0.79	0.39	0.75	0.90	2.88	6620	845	6	0	0	0	0	logfile
✔	7MKG	23890	2024-09-25	2021-04-23	3.07	3.13	—	4.0	0.023	1.98	0.0	0.10	10.38	0.01	2.409	0.44	0.00	5.6	94.4	0.0	-1.46	0.47	0.65	2.63	4.1	0.004	0.67	0.0	0.05	13.79	0.00	2.407	13.91	2.19	6.6	93.4	0.0	-2.53	2.01	0.47	0.71	2.61	11370	730	10	0	0	0	5800	logfile
✔	7WS7	32749	2024-09-23	2022-01-28	3.4	3.83	—	3.7	0.005	0.71	0.0	0.05	14.98	0.00	1.820	9.34	0.00	5.1	94.9	0.0	-1.78	0.71	0.84	3.63	3.7	0.003	0.65	0.0	0.04	15.65	0.00	2.464	7.37	3.01	4.4	95.6	0.0	-1.09	0.96	0.70	0.87	2.81	5209	671	6	0	2	0	0	logfile
✔	6WC9	21603	2024-09-26	2020-03-30	2.64	2.43	—	2.6	0.006	0.54	0.0	0.04	15.75	0.00	1.949	3.96	2.10	3.9	96.1	0.0	-0.42	0.53	0.77	3.24	2.6	0.003	0.54	0.0	0.04	17.30	0.00	2.459	2.76	3.07	1.7	98.3	0.0	2.63	0.74	0.64	0.82	3.51	11713	734	6	0	7	106	5904	logfile
✔	7WS6	32748	2024-09-23	2022-01-28	3.8	4.15	—	4.0	0.004	0.68	0.0	0.05	13.45	0.00	2.282	11.98	0.00	4.7	95.3	0.0	-1.37	0.67	0.73	2.81	4.0	0.004	0.77	0.0	0.05	16.57	0.00	2.517	11.69	3.36	6.1	93.9	0.0	-1.36	0.66	0.67	0.74	2.06	3531	451	3	0	0	0	0	logfile
✔	6X6K	22076	2024-09-26	2020-05-28	3.1	3.22	—	3.2	0.011	1.23	2.0	0.07	13.77	0.01	2.210	8.21	0.00	5.5	94.5	0.0	-1.94	0.69	0.84	2.88	3.2	0.006	0.79	1.0	0.05	16.46	0.00	1.737	15.64	2.64	5.7	94.3	0.0	-0.41	0.59	0.70	0.86	2.51	60970	7602	42	0	0	0	0	logfile
✔	6W6V	21564	2024-09-30	2020-03-17	3.0	3.67	—	3.6	0.004	0.63	0.0	0.04	18.07	0.00	2.092	6.70	0.05	10.9	89.1	0.0	-2.45	0.70	0.81	2.34	3.6	0.004	0.67	0.0	0.04	19.02	0.00	2.350	5.74	2.00	8.5	91.5	0.0	-1.29	0.71	0.68	0.81	1.97	24850	2306	11	294	0	0	0	logfile
✔	7T9i	25758	2024-09-29	2021-12-19	2.9	2.43	—	1.9	0.005	0.91	1.0	0.05	12.78	0.01	2.016	3.30	0.62	3.6	96.4	0.0	-0.16	0.69	0.63	2.32	1.8	0.004	0.70	0.0	0.04	14.97	0.00	2.310	7.36	2.58	6.4	93.6	0.0	-0.62	1.11	0.74	0.72	2.59	23529	1532	11	0	8	0	11557	logfile
✔	6oEG	20020	2024-09-28	2019-03-27	3.8	3.93	—	3.9	0.008	1.12	0.0	0.06	13.46	0.01	2.370	5.57	5.56	8.1	91.9	0.0	-4.92	0.42	0.79	3.01	3.9	0.004	0.83	0.0	0.05	15.66	0.00	2.393	8.48	3.42	8.1	91.9	0.0	-1.72	0.81	0.43	0.79	2.38	18564	2268	14	0	0	0	0	logfile
✔	6XBW	22121	2024-09-26	2020-06-07	3.37	3.48	—	3.4	0.010	1.30	80.0	0.09	15.50	0.01	1.049	8.64	0.61	3.3	96.5	0.3	-5.55	0.74	0.85	2.39	3.4	0.004	0.73	0.0	0.04	16.72	0.00	2.072	9.28	2.90	5.1	94.9	0.1	-0.23	0.70	0.75	0.89	2.14	63090	8186	38	0	18	0	0	logfile
✔	7KoD	22972	2024-09-27	2020-11-08	1.655	2.30	—	1.9	0.001	0.33	0.0	0.03	8.49	0.00	2.288	0.80	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	1.9	0.004	0.50	0.0	0.03	13.79	0.00	2.412	1.44	0.36	0.6	99.4	0.0	5.22	0.82	0.87	0.93	7.98	68186	4128	48	0	0	1727	32643	logfile
✔	6oDi	20020	2024-09-29	2019-03-26	3.8	3.96	—	3.9	0.008	0.98	0.0	0.07	14.95	0.01	2.406	7.54	4.19	9.8	90.2	0.0	-4.06	0.47	0.83	1.38	3.9	0.003	0.76	0.0	0.05	15.91	0.00	2.525	10.79	4.66	10.5	89.5	0.0	-2.71	1.77	0.47	0.83	1.42	20902	2772	14	0	0	0	0	logfile
✔	6oEF	20020	2024-09-24	2019-03-27	3.8	3.98	—	3.8	0.007	1.67	0.0	0.07	11.76	0.01	2.376	3.96	0.00	0.0	0.0	0.0	—	0.47	0.78	—	3.8	0.006	1.19	0.0	0.05	5.93	0.00	2.354	3.26	0.00	0.0	0.0	0.0	—	0.58	0.49	0.80	—	51240	0	14	0	10248	0	0	logfile
✔	7LFH	23302	2024-09-30	2021-01-17	4.2	3.38	—	4.1	0.004	0.95	12.0	0.05	13.99	0.01	2.078	29.03	0.00	13.1	86.8	0.1	-2.88	0.61	0.49	—	4.1	0.003	0.88	0.0	0.05	14.12	0.00	2.370	19.89	0.05	11.0	89.0	0.0	-2.51	1.03	0.65	0.66	—	76884	9672	12	0	0	0	0	logfile
✔	6X64	22069	2024-09-27	2020-05-27	3.7	4.01	—	3.7	0.008	1.34	0.0	0.05	9.32	0.01	2.584	0.78	0.00	0.0	0.0	0.0	—	0.68	0.84	—	3.7	0.009	1.20	0.0	0.05	5.38	0.00	2.405	1.28	0.00	0.0	0.0	0.0	—	1.70	0.69	0.86	—	15840	0	36	0	3168	0	0	logfile
✘	7WV4	32845	2024-09-30	2022-02-09	3.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24490	2636	6	80	80	0	0	logfile
✔	7TZ6	26203	2024-09-27	2022-02-15	2.88	3.27	—	3.2	0.005	0.77	0.0	0.04	12.16	0.01	2.038	1.51	0.26	2.6	97.3	0.0	0.43	0.65	0.83	3.78	3.2	0.003	0.59	0.0	0.04	15.60	0.00	2.195	2.77	1.27	2.9	97.1	0.0	1.82	0.70	0.66	0.86	3.01	64906	4126	28	0	10	0	32164	logfile

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