Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V27	31638	2024-09-23	2021-08-07	4.18	4.43	—	4.2	0.002	0.54	0.0	0.04	11.75	0.00	2.229	9.54	0.00	9.2	90.8	0.0	-4.40	0.85	0.80	—	4.2	0.004	0.74	0.0	0.05	12.10	0.00	2.443	14.71	0.00	11.8	88.2	0.0	-2.36	0.77	0.86	0.82	—	3252	421	4	0	1	0	0	logfile
✔	7DSV	30847	2024-09-25	2021-01-03	3.4	3.02	—	3.2	0.008	1.06	2.0	0.06	13.92	0.01	2.180	14.28	1.75	8.4	91.6	0.0	-1.28	0.61	0.77	2.46	3.2	0.004	0.61	0.0	0.04	14.90	0.00	2.536	7.71	1.87	6.2	93.8	0.0	1.29	1.11	0.61	0.76	1.91	9340	1296	6	0	16	0	0	logfile
✔	6TAS	10426	2024-09-24	2019-10-30	2.75	2.69	—	3.8	0.006	0.87	4.0	0.06	14.84	0.01	2.094	12.58	0.11	7.7	92.3	0.0	-1.28	0.53	0.75	2.28	3.8	0.002	0.55	0.0	0.03	17.50	0.00	2.436	4.71	2.18	2.8	97.2	0.0	1.08	0.54	0.58	0.80	2.21	8552	1044	10	0	2	0	0	logfile
✔	7NJQ	12407	2024-09-29	2021-02-17	2.67	2.56	—	2.2	0.004	0.52	0.0	0.04	14.82	0.00	1.901	5.62	0.00	2.1	97.8	0.1	1.78	0.85	0.87	4.10	2.2	0.005	0.55	0.0	0.04	16.03	0.00	1.745	4.32	0.70	2.7	97.2	0.1	1.22	0.34	0.86	0.89	4.23	74669	4936	31	0	11	16	37357	logfile
✔	6Z6G	11093	2024-09-28	2020-05-28	3.06	2.92	—	3.0	0.010	0.98	0.0	0.06	12.17	0.01	1.608	7.69	1.47	6.6	93.3	0.1	-3.39	0.82	0.85	4.17	3.0	0.003	0.74	0.0	0.04	14.78	0.00	2.167	7.52	1.12	3.7	96.2	0.1	0.42	1.03	0.83	0.88	3.10	18068	2142	5	28	2	0	0	logfile
✔	7NJN	12392	2024-09-29	2021-02-17	2.64	2.61	—	2.0	0.004	0.52	0.0	0.04	14.88	0.00	1.931	6.46	0.00	2.3	97.6	0.1	1.48	0.85	0.87	3.94	2.0	0.003	0.53	0.0	0.04	16.07	0.00	1.801	4.91	0.49	2.6	97.3	0.1	1.33	0.90	0.86	0.89	3.91	74548	4927	31	0	11	16	37299	logfile
✔	7TYS	26193	2024-09-29	2022-02-14	3.41	3.59	—	3.6	0.004	0.55	0.0	0.04	19.67	0.00	2.235	8.30	2.39	3.7	96.3	0.0	-0.22	0.58	0.81	2.74	3.6	0.004	0.75	1.0	0.05	17.56	0.00	2.215	9.74	4.58	3.5	96.5	0.0	0.34	1.10	0.57	0.80	2.21	21286	2788	11	0	27	0	0	logfile
✔	7SWL	25474	2024-09-30	2021-11-20	2.88	3.12	—	3.1	0.003	0.51	0.0	0.04	11.23	0.00	1.953	5.64	0.95	3.0	96.9	0.1	0.12	0.71	0.82	3.74	3.1	0.004	0.62	0.0	0.04	15.70	0.00	1.924	7.06	1.26	3.3	96.7	0.1	1.29	0.67	0.71	0.84	2.68	23907	3070	12	0	19	0	0	logfile
✔	7Si7	25139	2024-09-25	2021-10-12	3.49	3.47	—	3.4	0.003	1.32	0.0	0.04	13.13	0.00	1.963	5.23	0.00	2.6	97.4	0.0	2.38	0.49	0.78	0.67	3.4	0.002	0.91	0.0	0.04	15.05	0.00	2.094	3.63	0.66	2.6	97.4	0.0	2.78	1.00	0.51	0.82	0.51	11287	728	2	0	2	0	5777	logfile
✔	7VZ4	32220	2024-09-25	2021-11-15	1.89	1.72	—	1.9	0.010	1.17	0.0	0.08	28.81	0.00	2.167	2.63	0.97	1.6	98.4	0.0	0.11	0.75	0.82	7.08	1.9	0.004	0.65	0.0	0.04	27.95	0.00	2.537	4.37	0.97	0.8	99.2	0.0	2.98	0.78	0.77	0.86	7.50	11843	746	10	290	0	0	0	logfile
✔	7MiN	23857	2024-09-29	2021-04-17	3.09	3.25	—	3.2	0.011	1.46	0.0	0.05	20.42	0.01	2.303	4.34	0.18	4.6	95.3	0.2	-6.07	0.75	0.89	4.45	3.2	0.003	0.59	0.0	0.04	17.29	0.00	2.006	4.40	1.14	3.4	96.6	0.0	0.84	0.64	0.72	0.88	3.21	22728	2560	8	0	40	0	0	logfile
✔	7Wo4	32638	2024-09-28	2022-01-20	4.47	3.18	—	3.4	0.003	0.48	0.0	0.04	9.88	0.00	2.234	5.78	3.89	6.1	93.9	0.0	-3.76	0.83	0.71	—	3.4	0.004	0.67	0.0	0.05	11.19	0.00	2.357	7.56	0.00	9.2	90.8	0.0	-2.12	0.84	0.82	0.72	—	71208	9096	24	0	90	0	0	logfile
✔	7PD4	13330	2024-09-24	2021-08-04	4.9	4.13	—	7.8	0.005	0.87	0.0	0.05	14.59	0.00	2.035	38.59	0.00	11.7	88.3	0.0	-4.80	0.73	0.72	—	7.9	0.003	0.82	0.0	0.04	13.41	0.00	2.381	13.24	0.00	4.1	95.9	0.0	-0.25	0.98	0.73	0.72	—	6676	842	1	0	0	0	0	logfile
✔	7KY5	23068	2024-09-26	2020-12-07	3.98	4.52	—	4.3	0.004	1.09	0.0	0.05	13.51	0.01	2.200	16.72	0.07	6.6	93.4	0.0	-1.06	0.72	0.75	0.32	4.3	0.004	0.74	0.0	0.05	15.28	0.00	2.368	17.57	3.04	7.7	92.3	0.0	-1.12	1.04	0.73	0.78	0.19	12483	1534	6	0	15	0	0	logfile
✔	6QPW	4616	2024-09-24	2019-02-15	3.3	3.57	—	3.6	0.005	0.99	0.0	0.06	16.13	0.01	2.122	5.83	0.14	5.0	95.0	0.0	-3.55	0.70	0.75	3.06	3.6	0.004	1.04	1.0	0.07	17.80	0.00	1.966	12.61	3.42	5.3	94.7	0.0	-0.74	1.35	0.72	0.78	1.98	6784	839	6	0	4	0	0	logfile
✔	7CK6	30382	2024-09-24	2020-07-15	3.4	4.40	—	4.1	0.008	1.14	2.0	0.06	13.47	0.00	1.652	36.32	4.12	6.1	93.1	0.8	0.38	0.57	0.73	0.93	4.1	0.004	1.04	0.0	0.05	16.64	0.00	2.469	14.33	2.88	6.4	93.4	0.1	1.25	3.65	0.58	0.80	1.12	7460	936	11	0	1	0	0	logfile
✔	7SiM	25144	2024-09-26	2021-10-14	2.7	2.00	—	1.6	0.005	0.71	0.0	0.05	13.38	0.00	2.302	7.90	0.07	1.7	98.3	0.0	0.36	0.74	0.72	3.19	1.6	0.003	0.57	0.0	0.04	15.28	0.00	2.372	7.24	0.74	2.0	98.0	0.0	0.50	0.94	0.75	0.76	3.18	12826	1564	10	0	28	0	0	logfile
✔	5XYi	6788	2024-09-27	2017-07-08	3.35	3.41	—	3.4	0.007	1.11	5.0	0.09	22.95	0.00	1.113	14.15	5.14	8.3	89.0	2.7	-3.65	0.63	0.70	1.75	3.4	0.003	0.74	2.0	0.04	22.53	0.01	1.520	9.06	4.69	7.1	91.9	1.0	-1.50	1.51	0.78	0.84	1.30	65924	4368	34	1490	0	0	0	logfile
✔	5G05	3388	2024-09-26	2016-03-16	3.4	3.84	—	3.5	0.016	1.81	55.0	0.10	18.98	0.01	0.612	56.69	17.76	4.5	93.6	1.8	-0.14	0.85	0.76	1.42	3.5	0.005	0.92	3.0	0.04	17.72	0.01	2.107	15.74	3.92	4.6	94.9	0.5	0.72	1.69	0.89	0.85	1.27	63181	8027	21	0	3	0	0	logfile
✔	7JZ2	22528	2024-09-29	2020-09-01	2.5	2.95	—	3.0	0.033	1.28	0.0	0.53	14.26	0.00	2.070	35.46	1.38	3.6	96.4	0.0	-2.16	0.61	0.72	2.30	3.0	0.004	1.17	0.0	0.06	17.11	0.00	1.796	10.31	1.76	3.9	96.1	0.0	0.39	1.18	0.52	0.71	2.62	22866	2871	24	0	24	0	0	logfile

• ← previous
• Page 2 of 538
• next →