Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8WPK	37717	2024-09-27	2023-10-10	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16854	1909	11	70	1	0	0	logfile
✘	8HKX	34862	2024-09-26	2022-11-28	3.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-2.91	—	—	1.03	—	—	—	—	—	—	—	—	—	—	—	—	—	-3.07	—	—	—	0.69	59656	3419	28	1491	57	0	0	logfile
✘	8WPE	37714	2024-09-27	2023-10-10	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16745	1898	11	69	1	0	0	logfile
✔	8GN5	34155	2024-09-26	2022-08-23	4.02	4.40	—	4.4	0.012	1.81	0.0	0.10	13.40	0.01	2.215	1.08	0.00	4.4	95.6	0.0	-1.29	0.33	0.81	—	4.4	0.003	0.70	0.0	0.04	13.88	0.00	2.526	5.28	0.08	3.6	96.4	0.0	-0.48	0.73	0.34	0.81	—	12096	1584	4	0	0	0	0	logfile
✔	8TYQ	41728	2024-09-24	2023-08-25	2.99	2.37	—	3.2	0.007	0.98	3.0	0.05	14.46	0.01	2.195	13.81	0.53	3.7	96.1	0.2	-0.16	0.71	0.64	1.66	3.2	0.003	0.74	0.0	0.04	16.69	0.01	2.427	10.20	0.74	3.8	96.2	0.0	-0.16	1.22	0.77	0.76	2.26	8529	1069	3	0	1	0	0	logfile
✔	8TJ3	41299	2024-09-26	2023-07-20	3.2	3.62	—	3.4	0.004	0.72	0.0	0.04	13.85	0.02	2.416	10.13	1.16	7.4	92.4	0.1	0.15	0.73	0.58	0.54	3.4	0.004	0.65	0.0	0.04	15.58	0.00	2.307	13.64	1.30	7.6	92.3	0.1	0.18	1.86	0.80	0.77	1.70	13127	833	2	0	0	0	6652	logfile
✔	8T8M	41099	2024-09-26	2023-06-22	3.0	3.51	—	3.4	0.003	0.56	0.0	0.04	14.01	0.00	2.230	6.14	0.00	4.3	95.7	0.0	0.12	0.80	0.81	3.02	3.4	0.006	0.68	0.0	0.05	15.75	0.00	2.441	5.47	1.82	5.0	95.0	0.0	0.41	0.28	0.82	0.86	2.78	13146	1770	6	0	2	0	0	logfile
✘	8JZ7	36736	2024-09-25	2023-07-04	2.6	2.26	—	1.9	0.006	0.85	0.0	0.05	13.85	0.01	2.197	15.42	0.61	7.0	93.0	0.0	-2.16	0.75	0.73	2.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9042	1144	6	0	1	0	0	logfile
✘	8AN3	15531	2024-09-25	2022-08-04	3.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-1.24	—	—	1.97	—	—	—	—	—	—	—	—	—	—	—	—	—	-1.16	—	—	—	1.63	8721	1040	20	0	68	0	0	logfile
✘	8P7B	17528	2024-09-26	2023-05-30	2.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12363	1143	10	161	6	2	0	logfile
✔	8Jii	36312	2024-09-25	2023-05-26	3.17	2.37	—	3.4	0.006	0.84	0.0	0.05	14.12	0.00	1.963	7.59	0.10	4.6	95.4	0.0	-1.97	0.74	0.78	3.14	3.4	0.002	0.58	0.0	0.04	15.63	0.00	2.534	4.26	1.62	3.9	96.1	0.0	-0.75	0.31	0.75	0.81	2.58	9083	1144	6	0	3	1	0	logfile
✔	9GD0	51238	2024-09-28	2024-08-04	2.8	3.26	—	3.0	0.006	0.84	0.0	0.05	27.26	0.01	2.229	4.41	0.00	0.5	99.5	0.0	-0.62	0.86	0.82	3.22	3.0	0.004	0.65	0.0	0.03	28.08	0.00	2.268	7.19	2.19	1.7	98.3	0.0	2.43	1.33	0.88	0.86	2.27	20207	1253	16	500	0	0	0	logfile
✘	8WPF	37715	2024-09-27	2023-10-10	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16896	1908	11	73	1	0	0	logfile
✔	8UX1	42685	2024-09-27	2023-11-08	2.5	2.29	—	2.8	0.006	0.64	0.0	0.04	25.88	0.00	2.132	5.20	1.27	2.2	97.6	0.2	1.25	0.86	0.86	4.03	2.8	0.004	0.59	0.0	0.04	26.25	0.00	2.588	4.97	1.63	2.3	97.6	0.1	1.49	1.07	0.86	0.86	3.61	16395	1332	12	291	0	0	0	logfile
✘	8UW3	42637	2024-09-26	2023-11-06	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12005	1265	4	73	1	0	0	logfile
✔	8UHF	42279	2024-09-26	2023-10-09	3.8	3.77	—	1.7	0.002	0.49	0.0	0.04	12.21	0.00	2.126	10.07	0.00	3.0	97.0	0.0	-1.49	0.62	0.79	0.57	1.7	0.005	0.91	0.0	0.04	16.07	0.00	2.321	20.10	2.30	4.7	95.3	0.0	-0.33	1.24	0.63	0.81	0.65	12411	1739	9	0	0	0	0	logfile
✔	8XCV	38256	2024-09-23	2023-12-10	2.83	3.05	—	3.0	0.007	0.80	0.0	0.05	16.46	0.01	2.441	4.86	2.95	1.5	98.5	0.0	1.22	0.48	0.89	4.82	3.0	0.002	0.49	0.0	0.04	15.89	0.00	2.544	5.62	0.59	2.2	97.8	0.0	1.78	0.85	0.48	0.91	4.40	3310	415	2	0	1	7	0	logfile
✔	8SZH	40916	2024-09-28	2023-05-29	3.1	2.21	—	1.8	0.006	0.78	2.0	0.11	14.62	0.01	2.196	4.04	0.00	3.8	96.2	0.0	-0.33	0.82	0.82	2.95	1.8	0.003	0.53	0.0	0.04	15.75	0.00	2.452	2.75	1.66	3.7	96.3	0.0	0.03	0.35	0.83	0.84	2.47	18062	2267	10	0	24	1	0	logfile
✘	7XFJ	33174	2024-09-26	2022-04-01	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12805	943	11	262	0	0	0	logfile
✔	8EZJ	28743	2024-09-29	2022-11-01	3.3	2.34	—	1.5	0.004	0.55	0.0	0.04	11.20	0.00	2.195	10.74	0.23	8.6	91.4	0.0	0.57	0.75	0.77	1.96	1.9	0.004	0.67	0.0	0.04	14.98	0.00	2.428	10.70	3.01	8.2	91.8	0.0	0.46	0.39	0.75	0.76	1.53	23215	2891	6	0	2	0	0	logfile

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